Pregenerated sensors for VMN1R240 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096152

Ensembl transcript IDs: ENSMUST00000079099.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCGTCCTGATTGGGAGTaGGGATGTGCTGCATTCGCTGGCGATGTCTATGGAGGAGAAGTA	+
Preference number: 5 (lower is better) Translates to: RLLWSQLGLWRPDWE*GCAAFAGDVYGGEV Trigger: TACTTCTCCTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGACCAGAGCAACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079099.2
CDS TCA 90 bp	AAGATAGTACAGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCGTCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATGG	+
Preference number: 5 (lower is better) Translates to: KIVQVALVSAWPLAS*LGVRMCCIRWRCLW Trigger: CCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGACCAGAGCAACCTGTACTATCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079099.2
CDS TCA 90 bp	CCCAGGACACAGGTGGAACACAAGTTTGTGCTTCTTGCCACCAGGTaGCTGAAGGATTCTAATTTACATTTGAGTTCAGTTGGAGGAGTT	+
Preference number: 5 (lower is better) Translates to: PRTQVEHKFVLLATR*LKDSNLHLSSVGGV Trigger: AACTCCTCCAACTGAACTCAAATGTAAATTAGAATCCTTCAGTCACCTGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079099.2
CDS CCA 90 bp	AACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACATTaGCCACAGTCCCAACCCCAAACTGGCAAAACAAGAGGAGCTGAA	+
Preference number: 5 (lower is better) Translates to: NQSRLERNYGQTERH*PQSQPQTGKTRGAE Trigger: TTCAGCTCCTCTTGTTTTGCCAGTTTGGGGTTGGGACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079099.2
CDS TCA 72 bp	CAGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCGTCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGA	+
Preference number: 6 (lower is better) Translates to: QVALVSAWPLAS*LGVRMCCIRWR Trigger: TCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGACCAGAGCAACCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079099.2
CDS CAA 72 bp	AAGACTGGAGAGAAATTATGGACAAACAGAAAGACATaGGCCACAGTCCCAACCCCAAACTGGCAAAACAAG	+
Preference number: 6 (lower is better) Translates to: KTGEKLWTNRKT*ATVPTPNWQNK Trigger: CTTGTTTTGCCAGTTTGGGGTTGGGACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079099.2
CDS CAA 72 bp	GTGGAACAGAACAACTTTCTGTTTGAGTCAGTGTTATaGTCTGTTATCTGTGGACCACTGACCTTAATTGGA	+
Preference number: 6 (lower is better) Translates to: VEQNNFLFESVL*SVICGPLTLIG Trigger: TCCAATTAAGGTCAGTGGTCCACAGATAACAGACAATAACACTGACTCAAACAGAAAGTTGTTCTGTTCCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079099.2
CDS TCA 72 bp	TCTGTTATCTGTGGACCACTGACCTTAATTGGAATGTaGATGTTACTTAAGACACTGAAAAACCAACAACTG	+
Preference number: 6 (lower is better) Translates to: SVICGPLTLIGM*MLLKTLKNQQL Trigger: CAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATTCACATTCCAATTAAGGTCAGTGGTCCACAGATAACAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079099.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu