Pregenerated sensors for VMN1R235 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050102Ensembl transcript IDs: ENSMUST00000060603.5, ENSMUST00000235270.2, ENSMUST00000236183.2, ENSMUST00000236212.2, ENSMUST00000236821.2, ENSMUST00000237540.2, ENSMUST00000237810.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACATCCCATCATTTCCTaGTGGCTGAACCTGAGAATC | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAHPIIS*WLNLRI Trigger: GATTCTCAGGTTCAGCCATCAGGAAATGATGGGATG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000060603.5 ENSMUST00000236212.2 ENSMUST00000236821.2 |
||
| CDS-3UTR TCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACATCCCATCATTTCCTaGTGGCTGAACCCACATTCT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAHPIIS*WLNPHS Trigger: AGAATGTGGGTTCAGCCATCAGGAAATGATGGGATG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235270.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCTGGGGCACTCCTTTaGACAGCAGAGTTAAGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEASGALL*TAELRS Trigger: ACTTCTTAACTCTGCTGTGCAAAGGAGTGCCCCAGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCCAGTCTCTGCTTGTaGCTGTGCAAGATGAGAACA | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEASSLCL*LCKMRT Trigger: TGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR CCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTAGGGCCATATTCCTaGCTGTCATCCCATCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEALGPYS*LSSHHF Trigger: GAAATGATGGGATGACAGCCAGGAATATGGCCCTAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236212.2 ENSMUST00000236821.2 |
||
| CDS-3UTR CCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCAACATCCAGTCTGTaGAGTTCAGCTTGTACCTCG | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEASTSSL*SSACTS Trigger: CGAGGTACAAGCTGAACTCCACAGACTGGATGTTGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR TCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCATTTCCTGATGGCTaGACCCACATTCTTGACACA | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEASFPDG*THILDT Trigger: TGTGTCAAGAATGTGGGTTCAGCCATCAGGAAATGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235270.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCATCAAACTGCTGCTaGAAATACATGTACCCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEASSNCC*KYMYPC Trigger: GCAGGGGTACATGTATTTGCAGCAGCAGTTTGATGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACACTCATCAAACTGCTaGTGCAAATACATGTACCCC | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAHSSNC*CKYMYP Trigger: GGGGTACATGTATTTGCAGCAGCAGTTTGATGAGTG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTCTGCTTGTGCCTGTaGAAGATGAGAACAGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEALCLCL*KMRTVD Trigger: ATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR TCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAACAGAAAGAAGCCACTaGACTTGGATGATTTGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEATERSH*TWMIWL Trigger: AAGCCAAATCATCCAAGTTCAGTGGCTTCTTTCTGT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAACACAGTGGCTAGATaGTATGGAGTAGTGGTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEANTVAR*YGVVVH Trigger: ATGAACCACTACTCCATAGCATCTAGCCACTGTGTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR TCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGCCACTGAACTTGGATaGTTTGGCTTTAAACTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAATELG*FGFKLF Trigger: AAAGAGTTTAAAGCCAAATCATCCAAGTTCAGTGGC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAACCAGCTTGGGTTATaGAAGAAAGACAGAAACAGT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEANQLGL*KKDRNS Trigger: ACTGTTTCTGTCTTTCTTGCATAACCCAAGCTGGTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR CCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAAGAATGTTTGTTTCTaGGAATGTGCTCCAGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAKNVCF*ECAPVS Trigger: AGAGACTGGAGCACATTCCCAGAAACAAACATTCTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR TCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACAATGGATATGTTTATaGGTAACCAGCTTGGGTTAT | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAQWICL*VTSLGY Trigger: ATAACCCAAGCTGGTTACTCATAAACATATCCATTG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATGTAAAAGAGGAGATTaGACCCAAAATCACTTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEACKRGD*TQNHLG Trigger: TCCTAAGTGATTTTGGGTGCAATCTCCTCTTTTACA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGGAAGGAATATAGTATaGAGGATTTGTCCAGTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAGRNIV*RICPVL Trigger: CAAAACTGGACAAATCCTGCATACTATATTCCTTCC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR GCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTTACAAACTCTGCTTaGAGACTGCAATGTAAAACA | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEALTNSA*RLQCKT Trigger: TGTTTTACATTGCAGTCTGCAAGCAGAGTTTGTAAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235270.2 |
||
| CDS-3UTR CCA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAATTGTCATATTTCTGTaGCCCAATTTTCCAGTCATG | + |
|
Preference number: 4 (lower is better) Translates to: HVHILLWHKELVNNHPEAIVIFL*PNFPVM Trigger: CATGACTGGAAAATTGGGCCACAGAAATATGACAAT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS TCA 90 bp | CCTAGGGCCATATTCCTGGCTGTCATCCCATCATTTCCTGATGGCTaGACCCACATTCTTGACACAGAATTGCCCTTACAAACTCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: PRAIFLAVIPSFPDG*THILDTELPLQTLL Trigger: AAGCAGAGTTTGTAAGGGCAATTCTGTGTCAAGAATGTGGGTTCAGCCATCAGGAAATGATGGGATGACAGCCAGGAATATGGCCCTAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235270.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATGCTCCAGTCTCTGCTaGTGCCTGTGCAAGATGAGA | + |
|
Preference number: 5 (lower is better) Translates to: HVHILLWHKELVNNHPEACSSLC*CLCKMR Trigger: TCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS GCA 90 bp | AAGAGTCCCAGATACACAACATCAGGGAGAGGAAGGAATATAGTATaGAGGATTTGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: KSPRYTTSGRGRNIV*RICPVLSRQTEQKP Trigger: TGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTTGTGTATCTGGGACTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGCTGAACCCACATTCTaGACACAGAATTGCCCTTAC | + |
|
Preference number: 5 (lower is better) Translates to: HVHILLWHKELVNNHPEAAEPTF*TQNCPY Trigger: GTAAGGGCAATTCTGTGTCAAGAATGTGGGTTCAGC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235270.2 |
||
| CDS TCA 90 bp | GTTCAGAGTGCAACAAAGACACAGAAAGAAGCCACTGAACTTGGATaGTTTGGCTTTAAACTCTTTCCACATAAAGTTCCTGTTGCTGAT | + |
|
Preference number: 5 (lower is better) Translates to: VQSATKTQKEATELG*FGFKLFPHKVPVAD Trigger: ATCAGCAACAGGAACTTTATGTGGAAAGAGTTTAAAGCCAAATCATCCAAGTTCAGTGGCTTCTTTCTGTGTCTTTGTTGCACTCTGAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS GCA 90 bp | CACATTCTTGACACAGAATTGCCCTTACAAACTCTGCTTGCAGACTaGAATGTAAAACACACAGCACTAGATCTTTTAAGTGGTACTGAT | + |
|
Preference number: 5 (lower is better) Translates to: HILDTELPLQTLLAD*NVKHTALDLLSGTD Trigger: ATCAGTACCACTTAAAAGATCTAGTGCTGTGTGTTTTACATTGCAGTCTGCAAGCAGAGTTTGTAAGGGCAATTCTGTGTCAAGAATGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235270.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGATTGTGAAGAATGTTaGTTTCTGGGAATGTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: HVHILLWHKELVNNHPEADCEEC*FLGMCS Trigger: GGAGCACATTCCCAGAAACAAACATTCTTCACAATC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTGAACTTGGATGATTaGGCTTTAAACTCTTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: HVHILLWHKELVNNHPEALNLDD*ALNSFH Trigger: GTGGAAAGAGTTTAAAGCCAAATCATCCAAGTTCAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAAGAAGCCACTGAACTaGGATGATTTGGCTTTAAAC | + |
|
Preference number: 5 (lower is better) Translates to: HVHILLWHKELVNNHPEAKKPLN*DDLALN Trigger: GTTTAAAGCCAAATCATCCAAGTTCAGTGGCTTCTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAATTCTTGACACAGAATaGCCCTTACAAACTCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: HVHILLWHKELVNNHPEAILDTE*PLQTLL Trigger: AAGCAGAGTTTGTAAGGGCAATTCTGTGTCAAGAAT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235270.2 |
||
| CDS-3UTR CAA 90 bp | CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATATAGTATGCAGGATTaGTCCAGTTTTGTCAAGACA | + |
|
Preference number: 5 (lower is better) Translates to: HVHILLWHKELVNNHPEAYSMQD*SSFVKT Trigger: TGTCTTGACAAAACTGGACAAATCCTGCATACTATA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS GCA 72 bp | TTTCTGGGAATGTGCTCCAGTCTCTGCTTGTGCCTGTaGAAGATGAGAACAGTAGATATGCTGGTCCAGACC | + |
|
Preference number: 6 (lower is better) Translates to: FLGMCSSLCLCL*KMRTVDMLVQT Trigger: GGTCTGGACCAGCATATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 90 bp | GATTGTGAAGAATGTTTGTTTCTGGGAATGTGCTCCAGTCTCTGCTaGTGCCTGTGCAAGATGAGAACAGTAGATATGCTGGTCCAGACC | + |
|
Preference number: 6 (lower is better) Translates to: DCEECLFLGMCSSLC*CLCKMRTVDMLVQT Trigger: GGTCTGGACCAGCATATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTCTTCACAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 90 bp | ATGGTTTTTATAACCCTGGACTCCGTGGATGATTGTGAAGAATGTTaGTTTCTGGGAATGTGCTCCAGTCTCTGCTTGTGCCTGTGCAAG | + |
|
Preference number: 6 (lower is better) Translates to: MVFITLDSVDDCEEC*FLGMCSSLCLCLCK Trigger: CTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTCTTCACAATCATCCACGGAGTCCAGGGTTATAAAAACCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS GCA 72 bp | GTGGATGATTGTGAAGAATGTTTGTTTCTGGGAATGTaGTCCAGTCTCTGCTTGTGCCTGTGCAAGATGAGA | + |
|
Preference number: 6 (lower is better) Translates to: VDDCEECLFLGM*SSLCLCLCKMR Trigger: TCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTCTTCACAATCATCCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 72 bp | GAATGTTTGTTTCTGGGAATGTGCTCCAGTCTCTGCTaGTGCCTGTGCAAGATGAGAACAGTAGATATGCTG | + |
|
Preference number: 6 (lower is better) Translates to: ECLFLGMCSSLC*CLCKMRTVDML Trigger: CAGCATATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 72 bp | TCTGGGGCACTCCTTTGCACAGCAGAGTTAAGAAGTTaGCTACAACCAAATAATTCAACATCCAGTCTGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SGALLCTAELRS*LQPNNSTSSLW Trigger: CCACAGACTGGATGTTGAATTATTTGGTTGTAGCAAACTTCTTAACTCTGCTGTGCAAAGGAGTGCCCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CCA 72 bp | GGAGTAGTGGTTCATGAGCAGAAAGGGACTCATAGCTaGGAAACACCCAGAAATGACAATGGATATGTTTAT | + |
|
Preference number: 6 (lower is better) Translates to: GVVVHEQKGTHS*ETPRNDNGYVY Trigger: ATAAACATATCCATTGTCATTTCTGGGTGTTTCCCAGCTATGAGTCCCTTTCTGCTCATGAACCACTACTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 72 bp | AACATCAGGGAGAGGAAGGAATATAGTATGCAGGATTaGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCC | + |
|
Preference number: 6 (lower is better) Translates to: NIRERKEYSMQD*SSFVKTNRAEA Trigger: GGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 90 bp | CAGATACACAACATCAGGGAGAGGAAGGAATATAGTATGCAGGATTaGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCCAAAGTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: QIHNIRERKEYSMQD*SSFVKTNRAEAKVL Trigger: CAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTTGTGTATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 90 bp | AGGATGTTCAGAGTGCAACAAAGACACAGAAAGAAGCCACTGAACTaGGATGATTTGGCTTTAAACTCTTTCCACATAAAGTTCCTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: RMFRVQQRHRKKPLN*DDLALNSFHIKFLL Trigger: CAACAGGAACTTTATGTGGAAAGAGTTTAAAGCCAAATCATCCAAGTTCAGTGGCTTCTTTCTGTGTCTTTGTTGCACTCTGAACATCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 90 bp | ACATCAGGGAGAGGAAGGAATATAGTATGCAGGATTTGTCCAGTTTaGTCAAGACAAACAGAGCAGAAGCCAAAGTCTTGTATAATTGTC | + |
|
Preference number: 6 (lower is better) Translates to: TSGRGRNIVCRICPV*SRQTEQKPKSCIIV Trigger: GACAATTATACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS GCA 72 bp | AGATACACAACATCAGGGAGAGGAAGGAATATAGTATaGAGGATTTGTCCAGTTTTGTCAAGACAAACAGAG | + |
|
Preference number: 6 (lower is better) Translates to: RYTTSGRGRNIV*RICPVLSRQTE Trigger: CTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTTGTGTATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 72 bp | AGAGGAAGGAATATAGTATGCAGGATTTGTCCAGTTTaGTCAAGACAAACAGAGCAGAAGCCAAAGTCTTGT | + |
|
Preference number: 6 (lower is better) Translates to: RGRNIVCRICPV*SRQTEQKPKSC Trigger: ACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 90 bp | GATTTGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCCAAAGTCTaGTATAATTGTCATATTTCTGTGGCCCAATTTTCCAGTCATGTA | + |
|
Preference number: 6 (lower is better) Translates to: DLSSFVKTNRAEAKV*YNCHISVAQFSSHV Trigger: TACATGACTGGAAAATTGGGCCACAGAAATATGACAATTATACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS CAA 72 bp | AGTTTTGTCAAGACAAACAGAGCAGAAGCCAAAGTCTaGTATAATTGTCATATTTCTGTGGCCCAATTTTCC | + |
|
Preference number: 6 (lower is better) Translates to: SFVKTNRAEAKV*YNCHISVAQFS Trigger: GGAAAATTGGGCCACAGAAATATGACAATTATACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||
| CDS TCA 72 bp | ATTTTCCAGTCATGTAAAAGAGATTATAAGTACTCATaGGGATGTTCAGAGTGCAACAAAGACACAGAAAGA | + |
|
Preference number: 6 (lower is better) Translates to: IFQSCKRDYKYS*GCSECNKDTER Trigger: TCTTTCTGTGTCTTTGTTGCACTCTGAACATCCTCATGAGTACTTATAATCTCTTTTACATGACTGGAAAAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000060603.5 ENSMUST00000235270.2 ENSMUST00000236183.2 ENSMUST00000236212.2 ENSMUST00000236821.2 ENSMUST00000237540.2 ENSMUST00000237810.2 |
||