RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R235 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050102

Ensembl transcript IDs: ENSMUST00000060603.5, ENSMUST00000235270.2, ENSMUST00000236183.2, ENSMUST00000236212.2, ENSMUST00000236821.2, ENSMUST00000237540.2, ENSMUST00000237810.2

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACATCCCATCATTTCCTaGTGGCTGAACCTGAGAATC +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAHPIIS*WLNLRI
Trigger: GATTCTCAGGTTCAGCCATCAGGAAATGATGGGATG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000060603.5
ENSMUST00000236212.2
ENSMUST00000236821.2
CDS-3UTR TCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACATCCCATCATTTCCTaGTGGCTGAACCCACATTCT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAHPIIS*WLNPHS
Trigger: AGAATGTGGGTTCAGCCATCAGGAAATGATGGGATG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235270.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCTGGGGCACTCCTTTaGACAGCAGAGTTAAGAAGT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEASGALL*TAELRS
Trigger: ACTTCTTAACTCTGCTGTGCAAAGGAGTGCCCCAGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCCAGTCTCTGCTTGTaGCTGTGCAAGATGAGAACA +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEASSLCL*LCKMRT
Trigger: TGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR CCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTAGGGCCATATTCCTaGCTGTCATCCCATCATTTC +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEALGPYS*LSSHHF
Trigger: GAAATGATGGGATGACAGCCAGGAATATGGCCCTAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236212.2
ENSMUST00000236821.2
CDS-3UTR CCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCAACATCCAGTCTGTaGAGTTCAGCTTGTACCTCG +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEASTSSL*SSACTS
Trigger: CGAGGTACAAGCTGAACTCCACAGACTGGATGTTGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR TCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCATTTCCTGATGGCTaGACCCACATTCTTGACACA +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEASFPDG*THILDT
Trigger: TGTGTCAAGAATGTGGGTTCAGCCATCAGGAAATGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235270.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATCATCAAACTGCTGCTaGAAATACATGTACCCCTGC +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEASSNCC*KYMYPC
Trigger: GCAGGGGTACATGTATTTGCAGCAGCAGTTTGATGA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACACTCATCAAACTGCTaGTGCAAATACATGTACCCC +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAHSSNC*CKYMYP
Trigger: GGGGTACATGTATTTGCAGCAGCAGTTTGATGAGTG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTCTGCTTGTGCCTGTaGAAGATGAGAACAGTAGAT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEALCLCL*KMRTVD
Trigger: ATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR TCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAACAGAAAGAAGCCACTaGACTTGGATGATTTGGCTT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEATERSH*TWMIWL
Trigger: AAGCCAAATCATCCAAGTTCAGTGGCTTCTTTCTGT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAACACAGTGGCTAGATaGTATGGAGTAGTGGTTCAT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEANTVAR*YGVVVH
Trigger: ATGAACCACTACTCCATAGCATCTAGCCACTGTGTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR TCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGCCACTGAACTTGGATaGTTTGGCTTTAAACTCTTT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAATELG*FGFKLF
Trigger: AAAGAGTTTAAAGCCAAATCATCCAAGTTCAGTGGC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAACCAGCTTGGGTTATaGAAGAAAGACAGAAACAGT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEANQLGL*KKDRNS
Trigger: ACTGTTTCTGTCTTTCTTGCATAACCCAAGCTGGTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR CCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAAGAATGTTTGTTTCTaGGAATGTGCTCCAGTCTCT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAKNVCF*ECAPVS
Trigger: AGAGACTGGAGCACATTCCCAGAAACAAACATTCTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR TCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACAATGGATATGTTTATaGGTAACCAGCTTGGGTTAT +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAQWICL*VTSLGY
Trigger: ATAACCCAAGCTGGTTACTCATAAACATATCCATTG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATGTAAAAGAGGAGATTaGACCCAAAATCACTTAGGA +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEACKRGD*TQNHLG
Trigger: TCCTAAGTGATTTTGGGTGCAATCTCCTCTTTTACA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGGAAGGAATATAGTATaGAGGATTTGTCCAGTTTTG +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAGRNIV*RICPVL
Trigger: CAAAACTGGACAAATCCTGCATACTATATTCCTTCC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR GCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTTACAAACTCTGCTTaGAGACTGCAATGTAAAACA +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEALTNSA*RLQCKT
Trigger: TGTTTTACATTGCAGTCTGCAAGCAGAGTTTGTAAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235270.2
CDS-3UTR CCA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAATTGTCATATTTCTGTaGCCCAATTTTCCAGTCATG +
Preference number: 4 (lower is better)
Translates to: HVHILLWHKELVNNHPEAIVIFL*PNFPVM
Trigger: CATGACTGGAAAATTGGGCCACAGAAATATGACAAT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS TCA 90 bp CCTAGGGCCATATTCCTGGCTGTCATCCCATCATTTCCTGATGGCTaGACCCACATTCTTGACACAGAATTGCCCTTACAAACTCTGCTT +
Preference number: 5 (lower is better)
Translates to: PRAIFLAVIPSFPDG*THILDTELPLQTLL
Trigger: AAGCAGAGTTTGTAAGGGCAATTCTGTGTCAAGAATGTGGGTTCAGCCATCAGGAAATGATGGGATGACAGCCAGGAATATGGCCCTAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235270.2
CDS-3UTR CAA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATGCTCCAGTCTCTGCTaGTGCCTGTGCAAGATGAGA +
Preference number: 5 (lower is better)
Translates to: HVHILLWHKELVNNHPEACSSLC*CLCKMR
Trigger: TCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS GCA 90 bp AAGAGTCCCAGATACACAACATCAGGGAGAGGAAGGAATATAGTATaGAGGATTTGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: KSPRYTTSGRGRNIV*RICPVLSRQTEQKP
Trigger: TGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTTGTGTATCTGGGACTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR CAA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGCTGAACCCACATTCTaGACACAGAATTGCCCTTAC +
Preference number: 5 (lower is better)
Translates to: HVHILLWHKELVNNHPEAAEPTF*TQNCPY
Trigger: GTAAGGGCAATTCTGTGTCAAGAATGTGGGTTCAGC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235270.2
CDS TCA 90 bp GTTCAGAGTGCAACAAAGACACAGAAAGAAGCCACTGAACTTGGATaGTTTGGCTTTAAACTCTTTCCACATAAAGTTCCTGTTGCTGAT +
Preference number: 5 (lower is better)
Translates to: VQSATKTQKEATELG*FGFKLFPHKVPVAD
Trigger: ATCAGCAACAGGAACTTTATGTGGAAAGAGTTTAAAGCCAAATCATCCAAGTTCAGTGGCTTCTTTCTGTGTCTTTGTTGCACTCTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS GCA 90 bp CACATTCTTGACACAGAATTGCCCTTACAAACTCTGCTTGCAGACTaGAATGTAAAACACACAGCACTAGATCTTTTAAGTGGTACTGAT +
Preference number: 5 (lower is better)
Translates to: HILDTELPLQTLLAD*NVKHTALDLLSGTD
Trigger: ATCAGTACCACTTAAAAGATCTAGTGCTGTGTGTTTTACATTGCAGTCTGCAAGCAGAGTTTGTAAGGGCAATTCTGTGTCAAGAATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235270.2
CDS-3UTR CAA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAGATTGTGAAGAATGTTaGTTTCTGGGAATGTGCTCC +
Preference number: 5 (lower is better)
Translates to: HVHILLWHKELVNNHPEADCEEC*FLGMCS
Trigger: GGAGCACATTCCCAGAAACAAACATTCTTCACAATC...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR CAA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCACTGAACTTGGATGATTaGGCTTTAAACTCTTTCCAC +
Preference number: 5 (lower is better)
Translates to: HVHILLWHKELVNNHPEALNLDD*ALNSFH
Trigger: GTGGAAAGAGTTTAAAGCCAAATCATCCAAGTTCAG...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR CAA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAAAGAAGCCACTGAACTaGGATGATTTGGCTTTAAAC +
Preference number: 5 (lower is better)
Translates to: HVHILLWHKELVNNHPEAKKPLN*DDLALN
Trigger: GTTTAAAGCCAAATCATCCAAGTTCAGTGGCTTCTT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS-3UTR CAA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCAATTCTTGACACAGAATaGCCCTTACAAACTCTGCTT +
Preference number: 5 (lower is better)
Translates to: HVHILLWHKELVNNHPEAILDTE*PLQTLL
Trigger: AAGCAGAGTTTGTAAGGGCAATTCTGTGTCAAGAAT...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235270.2
CDS-3UTR CAA 90 bp CATGTGCATATACTTCTGTGGCATAAGGAATTAGTCAATAACCATCCAGAAGCATATAGTATGCAGGATTaGTCCAGTTTTGTCAAGACA +
Preference number: 5 (lower is better)
Translates to: HVHILLWHKELVNNHPEAYSMQD*SSFVKT
Trigger: TGTCTTGACAAAACTGGACAAATCCTGCATACTATA...TGCTTCTGGATGGTTATTGACTAATTCCTTATGCCACAGAAGTATATGCACATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS GCA 72 bp TTTCTGGGAATGTGCTCCAGTCTCTGCTTGTGCCTGTaGAAGATGAGAACAGTAGATATGCTGGTCCAGACC +
Preference number: 6 (lower is better)
Translates to: FLGMCSSLCLCL*KMRTVDMLVQT
Trigger: GGTCTGGACCAGCATATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 90 bp GATTGTGAAGAATGTTTGTTTCTGGGAATGTGCTCCAGTCTCTGCTaGTGCCTGTGCAAGATGAGAACAGTAGATATGCTGGTCCAGACC +
Preference number: 6 (lower is better)
Translates to: DCEECLFLGMCSSLC*CLCKMRTVDMLVQT
Trigger: GGTCTGGACCAGCATATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTCTTCACAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 90 bp ATGGTTTTTATAACCCTGGACTCCGTGGATGATTGTGAAGAATGTTaGTTTCTGGGAATGTGCTCCAGTCTCTGCTTGTGCCTGTGCAAG +
Preference number: 6 (lower is better)
Translates to: MVFITLDSVDDCEEC*FLGMCSSLCLCLCK
Trigger: CTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTCTTCACAATCATCCACGGAGTCCAGGGTTATAAAAACCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS GCA 72 bp GTGGATGATTGTGAAGAATGTTTGTTTCTGGGAATGTaGTCCAGTCTCTGCTTGTGCCTGTGCAAGATGAGA +
Preference number: 6 (lower is better)
Translates to: VDDCEECLFLGM*SSLCLCLCKMR
Trigger: TCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTCTTCACAATCATCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 72 bp GAATGTTTGTTTCTGGGAATGTGCTCCAGTCTCTGCTaGTGCCTGTGCAAGATGAGAACAGTAGATATGCTG +
Preference number: 6 (lower is better)
Translates to: ECLFLGMCSSLC*CLCKMRTVDML
Trigger: CAGCATATCTACTGTTCTCATCTTGCACAGGCACAAGCAGAGACTGGAGCACATTCCCAGAAACAAACATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 72 bp TCTGGGGCACTCCTTTGCACAGCAGAGTTAAGAAGTTaGCTACAACCAAATAATTCAACATCCAGTCTGTGG +
Preference number: 6 (lower is better)
Translates to: SGALLCTAELRS*LQPNNSTSSLW
Trigger: CCACAGACTGGATGTTGAATTATTTGGTTGTAGCAAACTTCTTAACTCTGCTGTGCAAAGGAGTGCCCCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CCA 72 bp GGAGTAGTGGTTCATGAGCAGAAAGGGACTCATAGCTaGGAAACACCCAGAAATGACAATGGATATGTTTAT +
Preference number: 6 (lower is better)
Translates to: GVVVHEQKGTHS*ETPRNDNGYVY
Trigger: ATAAACATATCCATTGTCATTTCTGGGTGTTTCCCAGCTATGAGTCCCTTTCTGCTCATGAACCACTACTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 72 bp AACATCAGGGAGAGGAAGGAATATAGTATGCAGGATTaGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCC +
Preference number: 6 (lower is better)
Translates to: NIRERKEYSMQD*SSFVKTNRAEA
Trigger: GGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 90 bp CAGATACACAACATCAGGGAGAGGAAGGAATATAGTATGCAGGATTaGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCCAAAGTCTTG +
Preference number: 6 (lower is better)
Translates to: QIHNIRERKEYSMQD*SSFVKTNRAEAKVL
Trigger: CAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTTGTGTATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 90 bp AGGATGTTCAGAGTGCAACAAAGACACAGAAAGAAGCCACTGAACTaGGATGATTTGGCTTTAAACTCTTTCCACATAAAGTTCCTGTTG +
Preference number: 6 (lower is better)
Translates to: RMFRVQQRHRKKPLN*DDLALNSFHIKFLL
Trigger: CAACAGGAACTTTATGTGGAAAGAGTTTAAAGCCAAATCATCCAAGTTCAGTGGCTTCTTTCTGTGTCTTTGTTGCACTCTGAACATCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 90 bp ACATCAGGGAGAGGAAGGAATATAGTATGCAGGATTTGTCCAGTTTaGTCAAGACAAACAGAGCAGAAGCCAAAGTCTTGTATAATTGTC +
Preference number: 6 (lower is better)
Translates to: TSGRGRNIVCRICPV*SRQTEQKPKSCIIV
Trigger: GACAATTATACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS GCA 72 bp AGATACACAACATCAGGGAGAGGAAGGAATATAGTATaGAGGATTTGTCCAGTTTTGTCAAGACAAACAGAG +
Preference number: 6 (lower is better)
Translates to: RYTTSGRGRNIV*RICPVLSRQTE
Trigger: CTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCTCCCTGATGTTGTGTATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 72 bp AGAGGAAGGAATATAGTATGCAGGATTTGTCCAGTTTaGTCAAGACAAACAGAGCAGAAGCCAAAGTCTTGT +
Preference number: 6 (lower is better)
Translates to: RGRNIVCRICPV*SRQTEQKPKSC
Trigger: ACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATCCTGCATACTATATTCCTTCCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 90 bp GATTTGTCCAGTTTTGTCAAGACAAACAGAGCAGAAGCCAAAGTCTaGTATAATTGTCATATTTCTGTGGCCCAATTTTCCAGTCATGTA +
Preference number: 6 (lower is better)
Translates to: DLSSFVKTNRAEAKV*YNCHISVAQFSSHV
Trigger: TACATGACTGGAAAATTGGGCCACAGAAATATGACAATTATACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACTGGACAAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS CAA 72 bp AGTTTTGTCAAGACAAACAGAGCAGAAGCCAAAGTCTaGTATAATTGTCATATTTCTGTGGCCCAATTTTCC +
Preference number: 6 (lower is better)
Translates to: SFVKTNRAEAKV*YNCHISVAQFS
Trigger: GGAAAATTGGGCCACAGAAATATGACAATTATACAAGACTTTGGCTTCTGCTCTGTTTGTCTTGACAAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2
CDS TCA 72 bp ATTTTCCAGTCATGTAAAAGAGATTATAAGTACTCATaGGGATGTTCAGAGTGCAACAAAGACACAGAAAGA +
Preference number: 6 (lower is better)
Translates to: IFQSCKRDYKYS*GCSECNKDTER
Trigger: TCTTTCTGTGTCTTTGTTGCACTCTGAACATCCTCATGAGTACTTATAATCTCTTTTACATGACTGGAAAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000060603.5
ENSMUST00000235270.2
ENSMUST00000236183.2
ENSMUST00000236212.2
ENSMUST00000236821.2
ENSMUST00000237540.2
ENSMUST00000237810.2