Pregenerated sensors for VMN1R232 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062165

Ensembl transcript IDs: ENSMUST00000077001.3, ENSMUST00000237554.2, ENSMUST00000237560.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCAACATCATTGAATAACTGGTTCCACCCAAAAGCTCCCATTATCTaGGGGAAACCTTTGGAGATAATGATCAAGGAGTTAGATGTGAGC	+
Preference number: 5 (lower is better) Translates to: PTSLNNWFHPKAPII*GKPLEIMIKELDVS Trigger: GCTCACATCTAACTCCTTGATCATTATCTCCAAAGGTTTCCCCCAGATAATGGGAGCTTTTGGGTGGAACCAGTTATTCAATGATGTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2
CDS TCA 90 bp	AAACAAGATCCAGAAGAGAGAAATGGGCAAGCCCATAAACTTTGTTaGTTTGACTTTAAATTTCTTCCAATGGGAATTCCTGGGGCTGAT	+
Preference number: 5 (lower is better) Translates to: KQDPEERNGQAHKLC*FDFKFLPMGIPGAD Trigger: ATCAGCCCCAGGAATTCCCATTGGAAGAAATTTAAAGTCAAATCAACAAAGTTTATGGGCTTGCCCATTTCTCTCTTCTGGATCTTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2
CDS CAA 72 bp	TACCAAGTATACTCTGAAGTGAGAGTCCTACTCCTATaGCCATGTTCCTGGACTCCATTAGGTCATTCAACG	+
Preference number: 6 (lower is better) Translates to: YQVYSEVRVLLL*PCSWTPLGHST Trigger: CGTTGAATGACCTAATGGAGTCCAGGAACATGGCAATAGGAGTAGGACTCTCACTTCAGAGTATACTTGGTA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2
CDS CAA 90 bp	AATAACTGGTTCCACCCAAAAGCTCCCATTATCTGGGGGAAACCTTaGGAGATAATGATCAAGGAGTTAGATGTGAGCACATGTACTAGA	+
Preference number: 6 (lower is better) Translates to: NNWFHPKAPIIWGKP*EIMIKELDVSTCTR Trigger: TCTAGTACATGTGCTCACATCTAACTCCTTGATCATTATCTCCAAAGGTTTCCCCCAGATAATGGGAGCTTTTGGGTGGAACCAGTTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2
CDS GCA 72 bp	GATGTGTTGAACCCTCTTTTTGTGTACATGAAGTATTaGAATCATGAAGGTGCTAGAACATACAATGAGCAG	+
Preference number: 6 (lower is better) Translates to: DVLNPLFVYMKY*NHEGARTYNEQ Trigger: CTGCTCATTGTATGTTCTAGCACCTTCATGATTGCAATACTTCATGTACACAAAAAGAGGGTTCAACACATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2
CDS CAA 90 bp	ACTTCAGGAAACACACAAAGTGCCGTATATAGTATATCAACTATTTaGTCACGGCCTAGAGAATGGCAGAATTCAGAATCTCTCTTTTGT	+
Preference number: 6 (lower is better) Translates to: TSGNTQSAVYSISTI*SRPREWQNSESLFC Trigger: ACAAAAGAGAGATTCTGAATTCTGCCATTCTCTAGGCCGTGACAAAATAGTTGATATACTATATACGGCACTTTGTGTGTTTCCTGAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2
CDS CAA 72 bp	AACACACAAAGTGCCGTATATAGTATATCAACTATTTaGTCACGGCCTAGAGAATGGCAGAATTCAGAATCT	+
Preference number: 6 (lower is better) Translates to: NTQSAVYSISTI*SRPREWQNSES Trigger: AGATTCTGAATTCTGCCATTCTCTAGGCCGTGACAAAATAGTTGATATACTATATACGGCACTTTGTGTGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2
CDS CCA 72 bp	TATAGTATATCAACTATTTTGTCACGGCCTAGAGAATaGCAGAATTCAGAATCTCTCTTTTGTGTCTTGTTT	+
Preference number: 6 (lower is better) Translates to: YSISTILSRPRE*QNSESLFCVLF Trigger: AAACAAGACACAAAAGAGAGATTCTGAATTCTGCCATTCTCTAGGCCGTGACAAAATAGTTGATATACTATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077001.3 ENSMUST00000237554.2 ENSMUST00000237560.2

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