Pregenerated sensors for VMN1R231 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050933

Ensembl transcript IDs: ENSMUST00000061278.2, ENSMUST00000235948.2, ENSMUST00000238096.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	GTGCAGCACACTTATTTTATACATTGCTCTAAAAACTaGCATTGTGTCTGTTTCCTAGAGTTCTATATCACA	+
Preference number: 3 (lower is better) Translates to: VQHTYFIHCSKN*HCVCFLEFYIT Trigger: TGTGATATAGAACTCTAGGAAACAGACACAATGTCAGTTTTTAGAGCAATGTATAAAATAAGTGTGCTGCAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000235948.2 ENSMUST00000238096.2
CDS TCA 90 bp	GTGTCTTGGGTCACAATAAAGGGTCCCAAAGTAGGAAAACACAGATaGATGATGACTGTGATGTTAATCATCCACCAGCCAGCACCGCAA	+
Preference number: 5 (lower is better) Translates to: VSWVTIKGPKVGKHR*MMTVMLIIHQPAPQ Trigger: TTGCGGTGCTGGCTGGTGGATGATTAACATCACAGTCATCATTCATCTGTGTTTTCCTACTTTGGGACCCTTTATTGTGACCCAAGACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061278.2 ENSMUST00000235948.2 ENSMUST00000238096.2
CDS CCA 72 bp	ATCCAGGATAAGCTGAATCTGGGCAAAGCAGTGTCTTaGGTCACAATAAAGGGTCCCAAAGTAGGAAAACAC	+
Preference number: 6 (lower is better) Translates to: IQDKLNLGKAVS*VTIKGPKVGKH Trigger: GTGTTTTCCTACTTTGGGACCCTTTATTGTGACCCAAGACACTGCTTTGCCCAGATTCAGCTTATCCTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061278.2 ENSMUST00000235948.2 ENSMUST00000238096.2
CDS TCA 72 bp	GTCACAATAAAGGGTCCCAAAGTAGGAAAACACAGATaGATGATGACTGTGATGTTAATCATCCACCAGCCA	+
Preference number: 6 (lower is better) Translates to: VTIKGPKVGKHR*MMTVMLIIHQP Trigger: TGGCTGGTGGATGATTAACATCACAGTCATCATTCATCTGTGTTTTCCTACTTTGGGACCCTTTATTGTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061278.2 ENSMUST00000235948.2 ENSMUST00000238096.2
CDS CAA 90 bp	CTGCCAACTCTTTCAGTATACATAGGGAATTTGCAAACAAATACATaGAAGAACAGTTCCATCCCAAAAGTTTGCATTGTCTGTAGCACA	+
Preference number: 6 (lower is better) Translates to: LPTLSVYIGNLQTNT*KNSSIPKVCIVCST Trigger: TGTGCTACAGACAATGCAAACTTTTGGGATGGAACTGTTCTTCAATGTATTTGTTTGCAAATTCCCTATGTATACTGAAAGAGTTGGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061278.2 ENSMUST00000235948.2 ENSMUST00000238096.2
CDS CAA 72 bp	ACACTTCTGCCAACTCTTTCAGTATACATAGGGAATTaGCAAACAAATACATTGAAGAACAGTTCCATCCCA	+
Preference number: 6 (lower is better) Translates to: TLLPTLSVYIGN*QTNTLKNSSIP Trigger: TGGGATGGAACTGTTCTTCAATGTATTTGTTTGCAAATTCCCTATGTATACTGAAAGAGTTGGCAGAAGTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000061278.2 ENSMUST00000235948.2 ENSMUST00000238096.2
CDS GCA 72 bp	ACAAATACATTGAAGAACAGTTCCATCCCAAAAGTTTaGATTGTCTGTAGCACAATTCTAGAGAAAATGATG	+
Preference number: 6 (lower is better) Translates to: TNTLKNSSIPKV*IVCSTILEKMM Trigger: CATCATTTTCTCTAGAATTGTGCTACAGACAATGCAAACTTTTGGGATGGAACTGTTCTTCAATGTATTTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061278.2 ENSMUST00000235948.2
CDS CAA 72 bp	CTTTCAGTATACATAGGGAATTTGCAAACAAATACATaGAAGAACAGTTCCATCCCAAAAGTTTGCATTGTC	+
Preference number: 6 (lower is better) Translates to: LSVYIGNLQTNT*KNSSIPKVCIV Trigger: GACAATGCAAACTTTTGGGATGGAACTGTTCTTCAATGTATTTGTTTGCAAATTCCCTATGTATACTGAAAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061278.2 ENSMUST00000235948.2 ENSMUST00000238096.2

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