Pregenerated sensors for VMN1R228 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060245Ensembl transcript IDs: ENSMUST00000072410.5, ENSMUST00000232812.2, ENSMUST00000233164.2, ENSMUST00000233186.2, ENSMUST00000233605.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTAGGCCATCCTCTGCTACATATACAACTAGATACACAAGCTCTGTaGGTACTGGTTAGTTCATATTGGTGTTCCTCCTATAGGGTTGCA | + |
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Preference number: 1 (lower is better) Translates to: LGHPLLHIQLDTQAL*VLVSSYWCSSYRVA Trigger: TGCAACCCTATAGGAGGAACACCAATATGAACTAACCAGTACCCACAGAGCTTGTGTATCTAGTTGTATATGTAGCAGAGGATGGCCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR CCA 90 bp | TCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTaGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGGCTTCTTC | + |
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Preference number: 1 (lower is better) Translates to: SCQQNLAGICNSAWV*WLFMGSHALFKGFF Trigger: GAAGAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACAGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR CCA 90 bp | TCAGAATCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTaGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGGC | + |
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Preference number: 1 (lower is better) Translates to: SESCQQNLAGICNSA*VWWLFMGSHALFKG Trigger: GCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACAGGATTCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR CCA 90 bp | TGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTaGTTGTTTATGGGATCACATGCACTTTTTAAAGGCTTCTTCCAT | + |
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Preference number: 1 (lower is better) Translates to: CQQNLAGICNSAWVW*LFMGSHALFKGFFH Trigger: ATGGAAGAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTCCTCCCAATGATGGCTaGCTAGGCCATCCTCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: FPVPQPTHHFLALGFPVPPPNDG*LGHPLL Trigger: TAGCAGAGGATGGCCTAGTCAGCCATCATTGGGAGG...AGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | CTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCTCCCACATGACTGCTTaGGTAAAAACATTCTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: LFPNPPTTSWPWDSLYLGSHMTA*VKTFSH Trigger: GTGAGAGAATGTTTTTACTCAAGCAGTCATGTGGGA...GCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | CTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCCAATCAAGTGTTGCTTaGCAATATGTCCATATAAGC | + |
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Preference number: 2 (lower is better) Translates to: LFPNPPTTSWPWDSLYLGQSSVA*QYVHIS Trigger: GCTTATATGGACATATTGTCAAGCAACACTTGATTG...GCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTAATAGTGCCTGGGTTTaGTGGTTGTTTATGGGATCA | + |
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Preference number: 2 (lower is better) Translates to: FPVPQPTHHFLALGFPVPNSAWV*WLFMGS Trigger: TGATCCCATAAACAACCACCAAACCCAGGCACTATT...AGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCATACATAGCACAGTTTATTaGGCTAAAAACCTGTGGTTA | + |
|
Preference number: 2 (lower is better) Translates to: FPNPPTTSWPWDSLYLGIHSTVY*AKNLWL Trigger: TAACCACAGGTTTTTAGCTCAATAAACTGTGCTATG...TATGCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTAAAATACTAGCCTCATaGAGCAAGAAGAATCAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: FPVPQPTHHFLALGFPVPKILAS*SKKNQA Trigger: TGCTTGATTCTTCTTGCTTCATGAGGCTAGTATTTT...AGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CCA 90 bp | TCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGCTGTCATACAATAACTaGGCAAACATATATAGGACT | + |
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Preference number: 2 (lower is better) Translates to: SLFPNPPTTSWPWDSLYLLSYNN*ANIYRT Trigger: AGTCCTATATATGTTTGCCCAGTTATTGTATGACAG...CAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | GCCAGGCACTGGCATAGTCTCACAAGAGACAGTTATATCAGAATCCTGTCAGCATGCTGGGATATTGTCTaGTTACAGCATGCATGGGTC | + |
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Preference number: 2 (lower is better) Translates to: ARHWHSLTRDSYIRILSACWDIV*LQHAWV Trigger: GACCCATGCATGCTGTAATCAGACAATATCCCAGCA...TGCTGACAGGATTCTGATATAACTGTCTCTTGTGAGACTATGCCAGTGCCTGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCATCTACTTCTGTATTTGCCAGGCACTGGCATAGTCTCACAAGAGACAGTTTGCTGGGATATTGTCTaGTTACAGCATGCATGGGTC | + |
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Preference number: 2 (lower is better) Translates to: EHLLLYLPGTGIVSQETVCWDIV*LQHAWV Trigger: GACCCATGCATGCTGTAATCAGACAATATCCCAGCA...AACTGTCTCTTGTGAGACTATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGGCTTCTTGCTGGGATATTGTCTaGTTACAGCATGCATGGGTC | + |
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Preference number: 2 (lower is better) Translates to: VPGFGGCLWDHMHFLKASCWDIV*LQHAWV Trigger: GACCCATGCATGCTGTAATCAGACAATATCCCAGCA...AGAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCATCTACTTCTGTATTTGCCAGGCACTGGCATAGTCTCACAAGAGACAGTTTCCCACATGACTGCTTaGGTAAAAACATTCTCTCAC | + |
|
Preference number: 2 (lower is better) Translates to: EHLLLYLPGTGIVSQETVSHMTA*VKTFSH Trigger: GTGAGAGAATGTTTTTACTCAAGCAGTCATGTGGGA...AACTGTCTCTTGTGAGACTATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CCA 90 bp | GAGCATCTACTTCTGTATTTGCCAGGCACTGGCATAGTCTCACAAGAGACAGTTAATAGTGCCTGGGTTTaGTGGTTGTTTATGGGATCA | + |
|
Preference number: 2 (lower is better) Translates to: EHLLLYLPGTGIVSQETVNSAWV*WLFMGS Trigger: TGATCCCATAAACAACCACCAAACCCAGGCACTATT...AACTGTCTCTTGTGAGACTATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR CAA 90 bp | CCTGTGCTCCATACAATAGATGACTGTGAGCATCTACTTCTGTATTaGCCAGGCACTGGCATAGTCTCACAAGAGACAGTTATATCAGAA | + |
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Preference number: 2 (lower is better) Translates to: PVLHTIDDCEHLLLY*PGTGIVSQETVISE Trigger: TTCTGATATAACTGTCTCTTGTGAGACTATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTCATCTATTGTATGGAGCACAGG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGTGCTGGGATATTGTCTaGTTACAGCATGCATGGGTC | + |
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Preference number: 2 (lower is better) Translates to: QQNLAGICNSAWVWWLFMCWDIV*LQHAWV Trigger: GACCCATGCATGCTGTAATCAGACAATATCCCAGCA...CATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CCA 90 bp | CATACAATAGATGACTGTGAGCATCTACTTCTGTATTTGCCAGGCACTGGCATAAGTGCCTGGGTTTGGTaGTTGTTTATGGGATCACAT | + |
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Preference number: 2 (lower is better) Translates to: HTIDDCEHLLLYLPGTGISAWVW*LFMGSH Trigger: ATGTGATCCCATAAACAACCACCAAACCCAGGCACT...TATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTCATCTATTGTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | TGGCATAGTCTCACAAGAGACAGTTATATCAGAATCCTGTCAGCAAAATCTTGCTCCCACATGACTGCTTaGGTAAAAACATTCTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: WHSLTRDSYIRILSAKSCSHMTA*VKTFSH Trigger: GTGAGAGAATGTTTTTACTCAAGCAGTCATGTGGGA...GCAAGATTTTGCTGACAGGATTCTGATATAACTGTCTCTTGTGAGACTATGCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | TATCAGAATCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTTCCCACATGACTGCTTaGGTAAAAACATTCTCTCAC | + |
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Preference number: 2 (lower is better) Translates to: YQNPVSKILLVYVIVPGFSHMTA*VKTFSH Trigger: GTGAGAGAATGTTTTTACTCAAGCAGTCATGTGGGA...AAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACAGGATTCTGATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CCA 90 bp | GTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGGCTTCTCTGTCATACAATAACTaGGCAAACATATATAGGACT | + |
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Preference number: 2 (lower is better) Translates to: VPGFGGCLWDHMHFLKASLSYNN*ANIYRT Trigger: AGTCCTATATATGTTTGCCCAGTTATTGTATGACAG...AGAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR CAA 90 bp | CAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTGGTaGTTTATGGGATCACATGCACTTTTTAAAGGCTTCTTCCATAAA | + |
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Preference number: 2 (lower is better) Translates to: QQNLAGICNSAWVWW*FMGSHALFKGFFHK Trigger: TTTATGGAAGAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | GTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGCATAGCACAGTTTATTaGGCTAAAAACCTGTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: VIVPGFGGCLWDHMHFLKHSTVY*AKNLWL Trigger: TAACCACAGGTTTTTAGCTCAATAAACTGTGCTATG...CTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | TATCAGAATCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTCATAGCACAGTTTATTaGGCTAAAAACCTGTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: YQNPVSKILLVYVIVPGFHSTVY*AKNLWL Trigger: TAACCACAGGTTTTTAGCTCAATAAACTGTGCTATG...AAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACAGGATTCTGATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | TATCAGAATCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTAAAATACTAGCCTCATaGAGCAAGAAGAATCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: YQNPVSKILLVYVIVPGFKILAS*SKKNQA Trigger: TGCTTGATTCTTCTTGCTTCATGAGGCTAGTATTTT...AAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACAGGATTCTGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR GCA 90 bp | AAACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTTGTCTGATTACAGCATaGATGGGTCTTCTGTTTGCT | + |
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Preference number: 2 (lower is better) Translates to: KHSLTVFRKQQQQQSTQSCLITA*MGLLFA Trigger: AGCAAACAGAAGACCCATGCATGCTGTAATCAGACA...ACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCATAGTCTCACAAGAGACAGTTATATCAGAATCCTGTCAGCAAAATCTTGCCTGTCATACAATAACTaGGCAAACATATATAGGACT | + |
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Preference number: 2 (lower is better) Translates to: WHSLTRDSYIRILSAKSCLSYNN*ANIYRT Trigger: AGTCCTATATATGTTTGCCCAGTTATTGTATGACAG...GCAAGATTTTGCTGACAGGATTCTGATATAACTGTCTCTTGTGAGACTATGCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR CAA 90 bp | CTATTTACCAGAAGCTATCCAATGCTACTAATATTTCAAAGAATGTaGGAAATAATGCCTATCTTCCTCTTCCCTCAGTGCTGGGATATT | + |
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Preference number: 2 (lower is better) Translates to: LFTRSYPMLLIFQRM*EIMPIFLFPQCWDI Trigger: AATATCCCAGCACTGAGGGAAGAGGAAGATAGGCATTATTTCCAACATTCTTTGAAATATTAGTAGCATTGGATAGCTTCTGGTAAATAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | AACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTCAAAATACTAGCCTCATaGAGCAAGAAGAATCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: NILSQFSENNNNNKAHRVKILAS*SKKNQA Trigger: TGCTTGATTCTTCTTGCTTCATGAGGCTAGTATTTT...GACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR TCA 90 bp | AAACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTCATAGCACAGTTTATTaGGCTAAAAACCTGTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: KHSLTVFRKQQQQQSTQSHSTVY*AKNLWL Trigger: TAACCACAGGTTTTTAGCTCAATAAACTGTGCTATG...ACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CCA 90 bp | AAACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTCTGTCATACAATAACTaGGCAAACATATATAGGACT | + |
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Preference number: 2 (lower is better) Translates to: KHSLTVFRKQQQQQSTQSLSYNN*ANIYRT Trigger: AGTCCTATATATGTTTGCCCAGTTATTGTATGACAG...ACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCCTCAGTGCTGGGATATaGTCTGATTACAGCATGCAT | + |
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Preference number: 3 (lower is better) Translates to: LFPNPPTTSWPWDSLYLGLSAGI*SDYSMH Trigger: ATGCATGCTGTAATCAGACAATATCCCAGCACTGAG...GCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | TCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGCATCTACTTCTGTATTaGCCAGGCACTGGCATAGTC | + |
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Preference number: 3 (lower is better) Translates to: SLFPNPPTTSWPWDSLYLHLLLY*PGTGIV Trigger: GACTATGCCAGTGCCTGGCAAATACAGAAGTAGATG...CAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | TCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGCTCAGTGCTGGGATATaGTCTGATTACAGCATGCAT | + |
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Preference number: 3 (lower is better) Translates to: SLFPNPPTTSWPWDSLYLLSAGI*SDYSMH Trigger: ATGCATGCTGTAATCAGACAATATCCCAGCACTGAG...CAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | TTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCATAGCATGGGTCTTCTGTTaGCTGTCATACAATAACTGG | + |
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Preference number: 3 (lower is better) Translates to: FPNPPTTSWPWDSLYLGIAWVFC*LSYNNW Trigger: CCAGTTATTGTATGACAGCAAACAGAAGACCCATGC...TATGCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCATCCCACATGACTGCTaGAGTAAAAACATTCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: LFPNPPTTSWPWDSLYLGIPHDC*SKNILS Trigger: TGAGAGAATGTTTTTACTCAAGCAGTCATGTGGGAT...GCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | CTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCCCTGTCAGCAAAATCTaGCTGGTATATGTAATAGTG | + |
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Preference number: 3 (lower is better) Translates to: LFPNPPTTSWPWDSLYLGPVSKI*LVYVIV Trigger: CACTATTACATATACCAGCAAGATTTTGCTGACAGG...GCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | TTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTGGGCATACCTGTCAGCAAAATCTaGCTGGTATATGTAATAGTG | + |
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Preference number: 3 (lower is better) Translates to: FPNPPTTSWPWDSLYLGIPVSKI*LVYVIV Trigger: CACTATTACATATACCAGCAAGATTTTGCTGACAGG...TATGCCCAGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
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| 3UTR-3UTR CAA 90 bp | GCCAGGCACTGGCATAGTCTCACAAGAGACAGTTATATCAGAATCCTGTCAGCAGCCTGGGTTTGGTGGTaGTTTATGGGATCACATGCA | + |
|
Preference number: 3 (lower is better) Translates to: ARHWHSLTRDSYIRILSAAWVWW*FMGSHA Trigger: TGCATGTGATCCCATAAACAACCACCAAACCCAGGC...TGCTGACAGGATTCTGATATAACTGTCTCTTGTGAGACTATGCCAGTGCCTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR-3UTR CAA 90 bp | GGTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTGCATGGGTCTTCTGTTaGCTGTCATACAATAACTGG | + |
|
Preference number: 3 (lower is better) Translates to: GICNSAWVWWLFMGSHALAWVFC*LSYNNW Trigger: CCAGTTATTGTATGACAGCAAACAGAAGACCCATGC...AAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR-3UTR CAA 90 bp | GTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTGCATGGGTCTTCTGTTaGCTGTCATACAATAACTGG | + |
|
Preference number: 3 (lower is better) Translates to: VYVIVPGFGGCLWDHMHFAWVFC*LSYNNW Trigger: CCAGTTATTGTATGACAGCAAACAGAAGACCCATGC...AAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR-3UTR CAA 90 bp | GTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGGCTTCTATCCCACATGACTGCTaGAGTAAAAACATTCTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: VPGFGGCLWDHMHFLKASIPHDC*SKNILS Trigger: TGAGAGAATGTTTTTACTCAAGCAGTCATGTGGGAT...AGAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR TCA 72 bp | TTAAAGGCTTCTTCCATAAAATCAGCACATGTCTGTTaGCCTCGAAACATCATCCCACATGACTGCTTGAGT | + |
|
Preference number: 3 (lower is better) Translates to: LKASSIKSAHVC*PRNIIPHDCLS Trigger: ACTCAAGCAGTCATGTGGGATGATGTTTCGAGGTCAACAGACATGTGCTGATTTTATGGAAGAAGCCTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR CCA 72 bp | TGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTaGGTTTGGTGGTTGTTTATGGGATCACATGCACTT | + |
|
Preference number: 3 (lower is better) Translates to: CQQNLAGICNSA*VWWLFMGSHAL Trigger: AAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR CCA 72 bp | AATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTaGTTGTTTATGGGATCACATGCACTTTTTAAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: NLAGICNSAWVW*LFMGSHALFKG Trigger: GCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR CCA 72 bp | CAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTaGTGGTTGTTTATGGGATCACATGCACTTTTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: QNLAGICNSAWV*WLFMGSHALFK Trigger: TTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR GCA 90 bp | TTCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTCAGAATGGTCTGTGTTaGTCTGTTTTCAGCAGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: FPVPQPTHHFLALGFPVPQNGLC*SVFSRD Trigger: ATCTCTGCTGAAAACAGAGCAACACAGACCATTCTG...AGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | AATGTTGGAAATAATGCCTATCTTCCTCTTCCCTCAGTGCTGGGATATTGTCTGTCACGGCCTCCAGAGTaGCAGAATTCAGAATCACTC | + |
|
Preference number: 4 (lower is better) Translates to: NVGNNAYLPLPSVLGYCLSRPPE*QNSESL Trigger: GAGTGATTCTGAATTCTGTCACTCTGGAGGCCGTGA...CAGACAATATCCCAGCACTGAGGGAAGAGGAAGATAGGCATTATTTCCAACATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | GTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGTCACGGCCTCCAGAGTaGCAGAATTCAGAATCACTC | + |
|
Preference number: 4 (lower is better) Translates to: VIVPGFGGCLWDHMHFLKSRPPE*QNSESL Trigger: GAGTGATTCTGAATTCTGTCACTCTGGAGGCCGTGA...CTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | TGGCATAGTCTCACAAGAGACAGTTATATCAGAATCCTGTCAGCAAAATCTTGCTCACGGCCTCCAGAGTaGCAGAATTCAGAATCACTC | + |
|
Preference number: 4 (lower is better) Translates to: WHSLTRDSYIRILSAKSCSRPPE*QNSESL Trigger: GAGTGATTCTGAATTCTGTCACTCTGGAGGCCGTGA...GCAAGATTTTGCTGACAGGATTCTGATATAACTGTCTCTTGTGAGACTATGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR CAA 72 bp | CATACAATAGATGACTGTGAGCATCTACTTCTGTATTaGCCAGGCACTGGCATAGTCTCACAAGAGACAGTT | + |
|
Preference number: 4 (lower is better) Translates to: HTIDDCEHLLLY*PGTGIVSQETV Trigger: AACTGTCTCTTGTGAGACTATGCCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTCATCTATTGTATG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | AACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTCTCACGGCCTCCAGAGTaGCAGAATTCAGAATCACTC | + |
|
Preference number: 4 (lower is better) Translates to: NILSQFSENNNNNKAHRVSRPPE*QNSESL Trigger: GAGTGATTCTGAATTCTGTCACTCTGGAGGCCGTGA...GACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | GGTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTGAAGCAGTAAAATCATaGCTCATCACAAATGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: GICNSAWVWWLFMGSHALEAVKS*LITNGP Trigger: AGGCCCATTTGTGATGAGTCATGATTTTACTGCTTC...AAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| 3UTR CAA 72 bp | CTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTGGTaGTTTATGGGATCACATGCACTTTTTAAAGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LAGICNSAWVWW*FMGSHALFKGF Trigger: GAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | GTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTGAAGCAGTAAAATCATaGCTCATCACAAATGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: VYVIVPGFGGCLWDHMHFEAVKS*LITNGP Trigger: AGGCCCATTTGTGATGAGTCATGATTTTACTGCTTC...AAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | CAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGAAGCAGTAAAATCATaGCTCATCACAAATGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: QQNLAGICNSAWVWWLFMEAVKS*LITNGP Trigger: AGGCCCATTTGTGATGAGTCATGATTTTACTGCTTC...CATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | TATCAGAATCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGAAGCAGTAAAATCATaGCTCATCACAAATGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: YQNPVSKILLVYVIVPGFEAVKS*LITNGP Trigger: AGGCCCATTTGTGATGAGTCATGATTTTACTGCTTC...AAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACAGGATTCTGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR GCA 90 bp | GGTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTACATTATTGAATAACTaGTTTGACCCAAAAGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GICNSAWVWWLFMGSHALTLLNN*FDPKAP Trigger: GGGAGCTTTTGGGTCAAAGCAGTTATTCAATAATGT...AAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR GCA 90 bp | CAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGACATTATTGAATAACTaGTTTGACCCAAAAGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: QQNLAGICNSAWVWWLFMTLLNN*FDPKAP Trigger: GGGAGCTTTTGGGTCAAAGCAGTTATTCAATAATGT...CATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR TCA 90 bp | AAACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTTTATGGAGGATGTGTTaGACCCTTTTCTTGTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KHSLTVFRKQQQQQSTQSLWRMC*TLFLCL Trigger: CAGACACAAGAAAAGGGTTCAACACATCCTCCATAA...ACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR GCA 90 bp | TATCAGAATCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTACATTATTGAATAACTaGTTTGACCCAAAAGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: YQNPVSKILLVYVIVPGFTLLNN*FDPKAP Trigger: GGGAGCTTTTGGGTCAAAGCAGTTATTCAATAATGT...AAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTGACAGGATTCTGATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR GCA 90 bp | AACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTCACATTATTGAATAACTaGTTTGACCCAAAAGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: NILSQFSENNNNNKAHRVTLLNN*FDPKAP Trigger: GGGAGCTTTTGGGTCAAAGCAGTTATTCAATAATGT...GACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR CAA 90 bp | TTCCCTGTTCCCCAACCCACCCACCACTTCCTGGCCCTGGGATTCCCTGTACCTTTGCACCCAACATTATaGAATAACTGCTTTGACCCA | + |
|
Preference number: 5 (lower is better) Translates to: FPVPQPTHHFLALGFPVPLHPTL*NNCFDP Trigger: TGGGTCAAAGCAGTTATTCAATAATGTTGGGTGCAA...AGGTACAGGGAATCCCAGGGCCAGGAAGTGGTGGGTGGGTTGGGGAACAGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR CAA 90 bp | AATGTTGGAAATAATGCCTATCTTCCTCTTCCCTCAGTGCTGGGATATTGTCTGACCTCAGGGGGTCCTTaGGAGAGAAGGATCAAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: NVGNNAYLPLPSVLGYCLTSGGP*ERRIKA Trigger: CGCCTTGATCCTTCTCTCCAAAGGACCCCCTGAGGT...CAGACAATATCCCAGCACTGAGGGAAGAGGAAGATAGGCATTATTTCCAACATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR CAA 90 bp | CAGCAAAATCTTGCTGGTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGACCTCAGGGGGTCCTTaGGAGAGAAGGATCAAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: QQNLAGICNSAWVWWLFMTSGGP*ERRIKA Trigger: CGCCTTGATCCTTCTCTCCAAAGGACCCCCTGAGGT...CATAAACAACCACCAAACCCAGGCACTATTACATATACCAGCAAGATTTTGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR CAA 90 bp | GTATATGTAATAGTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTGAGCCACAACATGGTTaGAACTTTTCTAGGTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: VYVIVPGFGGCLWDHMHFEPQHG*NFSRLS Trigger: GCTCAACCTAGAAAAGTTCAAACCATGTTGTGGCTC...AAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCACTATTACATATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR CAA 90 bp | GTGCCTGGGTTTGGTGGTTGTTTATGGGATCACATGCACTTTTTAAAGGCTTCTTTGCACCCAACATTATaGAATAACTGCTTTGACCCA | + |
|
Preference number: 5 (lower is better) Translates to: VPGFGGCLWDHMHFLKASLHPTL*NNCFDP Trigger: TGGGTCAAAGCAGTTATTCAATAATGTTGGGTGCAA...AGAAGCCTTTAAAAAGTGCATGTGATCCCATAAACAACCACCAAACCCAGGCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR CAA 90 bp | AACATTCTCTCACAGTTTTCAGAAAACAACAACAACAACAAAGCACACAGAGTCGAGCCACAACATGGTTaGAACTTTTCTAGGTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: NILSQFSENNNNNKAHRVEPQHG*NFSRLS Trigger: GCTCAACCTAGAAAAGTTCAAACCATGTTGTGGCTC...GACTCTGTGTGCTTTGTTGTTGTTGTTGTTTTCTGAAAACTGTGAGAGAATGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS-3UTR CAA 90 bp | GAGACAGTTATATCAGAATCCTGTCAGCAAAATCTTGCTGGTATATGTAATAGTGAGCCACAACATGGTTaGAACTTTTCTAGGTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: ETVISESCQQNLAGICNSEPQHG*NFSRLS Trigger: GCTCAACCTAGAAAAGTTCAAACCATGTTGTGGCTC...ACTATTACATATACCAGCAAGATTTTGCTGACAGGATTCTGATATAACTGTCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS TCA 90 bp | CTTAAGAAACAGGTGGTAGTGATGGACATACATCTGGCAATTCTTTaGACATATAAAATAAGCTTGCACCCAACATTATTGAATAACTGC | + |
|
Preference number: 5 (lower is better) Translates to: LKKQVVVMDIHLAIL*TYKISLHPTLLNNC Trigger: GCAGTTATTCAATAATGTTGGGTGCAAGCTTATTTTATATGTTCAAAGAATTGCCAGATGTATGTCCATCACTACCACCTGTTTCTTAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS CAA 72 bp | TTTGACCCAAAAGCTCCCATTACCTCAGGGGGTCCTTaGGAGAGAAGGATCAAGGCGTTGGATGTAAACACA | + |
|
Preference number: 6 (lower is better) Translates to: FDPKAPITSGGP*ERRIKALDVNT Trigger: TGTGTTTACATCCAACGCCTTGATCCTTCTCTCCAAAGGACCCCCTGAGGTAATGGGAGCTTTTGGGTCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS CAA 90 bp | TGCCATGTCCCTAAAGTCCATTCTGTCATTCAGCAGTTTCTTTCTTaGAATAATGGCAACAATCATGTCTCTGAGCCACAACATGGTTTG | + |
|
Preference number: 6 (lower is better) Translates to: CHVPKVHSVIQQFLS*NNGNNHVSEPQHGL Trigger: CAAACCATGTTGTGGCTCAGAGACATGATTGTTGCCATTATTCAAAGAAAGAAACTGCTGAATGACAGAATGGACTTTAGGGACATGGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS TCA 72 bp | ATCCAGGTAAAGCAACATCTAGAAGCAGTAAAATCATaGCTCATCACAAATGGGCCTAAAGTAGGAAAACAC | + |
|
Preference number: 6 (lower is better) Translates to: IQVKQHLEAVKS*LITNGPKVGKH Trigger: GTGTTTTCCTACTTTAGGCCCATTTGTGATGAGTCATGATTTTACTGCTTCTAGATGTTGCTTTACCTGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS CAA 90 bp | GTTTTCAGCAGAGATTCTAAGAGAAGCATGTTTATGGAGGATGTGTaGAACCCTTTTCTTGTGTCTGTAAAGTATGACAATCATGAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: VFSRDSKRSMFMEDV*NPFLVSVKYDNHEG Trigger: ACCTTCATGATTGTCATACTTTACAGACACAAGAAAAGGGTTCAACACATCCTCCATAAACATGCTTCTCTTAGAATCTCTGCTGAAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS CAA 90 bp | GGAAAACACAAAGCTATGATTGCTGTTATATTCATTACCCACCAATaGGGATCATGTGAAAGAGCAATATATCCATGTAAAATGGAAGAG | + |
|
Preference number: 6 (lower is better) Translates to: GKHKAMIAVIFITHQ*GSCERAIYPCKMEE Trigger: CTCTTCCATTTTACATGGATATATTGCTCTTTCACATGATCCCAATTGGTGGGTAATGAATATAACAGCAATCATAGCTTTGTGTTTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS TCA 72 bp | TACAATAAATCTACTATTTTGTCACGGCCTCCAGAGTaGCAGAATTCAGAATCACTCTTTTGTGTCCTATTT | + |
|
Preference number: 6 (lower is better) Translates to: YNKSTILSRPPE*QNSESLFCVLF Trigger: AAATAGGACACAAAAGAGTGATTCTGAATTCTGTCACTCTGGAGGCCGTGACAAAATAGTAGATTTATTGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||
| CDS CAA 72 bp | AGAGATTCTAAGAGAAGCATGTTTATGGAGGATGTGTaGAACCCTTTTCTTGTGTCTGTAAAGTATGACAAT | + |
|
Preference number: 6 (lower is better) Translates to: RDSKRSMFMEDV*NPFLVSVKYDN Trigger: ATTGTCATACTTTACAGACACAAGAAAAGGGTTCAACACATCCTCCATAAACATGCTTCTCTTAGAATCTCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000072410.5 ENSMUST00000232812.2 ENSMUST00000233164.2 ENSMUST00000233186.2 ENSMUST00000233605.2 |
||