Pregenerated sensors for VMN1R225 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043537Ensembl transcript IDs: ENSMUST00000061660.2, ENSMUST00000233346.2, ENSMUST00000233982.2
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTaGTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCT | + |
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Preference number: 1 (lower is better) Translates to: LKDDVLTNNHTTSPL*FLGPQVSQGFATSS Trigger: AGAAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR TCA 90 bp | GAGATACTATCTTCGGTGATACCCTGCTTAGTTTCTGTAATGCTTTaGCCCAGTATTTTCTTACCATGTTCCTATTTAATACTGGGGACA | + |
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Preference number: 1 (lower is better) Translates to: EILSSVIPCLVSVML*PSIFLPCSYLILGT Trigger: TGTCCCCAGTATTAAATAGGAACATGGTAAGAAAATACTGGGTCAAAGCATTACAGAAACTAAGCAGGGTATCACCGAAGATAGTATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR GCA 90 bp | GTACTCTTAGTTCTAGTGAGTGACACTGAATGCATTCAGCCTAATTaGTACTCATATAGTTATAGCAAAGTGAATCTCTTGTTTTCCCAG | + |
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Preference number: 1 (lower is better) Translates to: VLLVLVSDTECIQPN*YSYSYSKVNLLFSQ Trigger: CTGGGAAAACAAGAGATTCACTTTGCTATAACTATATGAGTAGCAATTAGGCTGAATGCATTCAGTGTCACTCACTAGAACTAAGAGTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTTGGTGGCTCAGTGTTTaGGAGTTCTCCGGGGTCCAG | + |
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Preference number: 2 (lower is better) Translates to: PVLSASWGLKSPKGLLHLWWLSV*EFSGVQ Trigger: CTGGACCCCGGAGAACTCTCAAACACTGAGCCACCA...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTTTGCTGGTCTTTCCATaGGGTCACCATCCTCCTCAC | + |
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Preference number: 2 (lower is better) Translates to: PVLSASWGLKSPKGLLHLLLVFP*GHHPPH Trigger: GTGAGGAGGATGGTGACCCCATGGAAAGACCAGCAA...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTTGGTGGCTCAGTGTTTaGGAGTTCTCCGGGGTCCAG | + |
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Preference number: 2 (lower is better) Translates to: PVSKMMSSLTTTPPVLSAWWLSV*EFSGVQ Trigger: CTGGACCCCGGAGAACTCTCAAACACTGAGCCACCA...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCTAATATCTGTTGGCTaGCTGGTGGCTCAGTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: PVLSASWGLKSPKGLLHLLISVG*LVAQCL Trigger: CAAACACTGAGCCACCAGCCAGCCAACAGATATTAG...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | CTCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCAGCTATCTAAGCCTCTaGACCAAAACTCCCAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: LTNNHTTSPLCFLGPQVSSYLSL*TKTPKE Trigger: TTCTTTGGGAGTTTTGGTTCAGAGGCTTAGATAGCT...GGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | CTCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCACATGGAGAGAAAGTaGTTCACTGGATCTTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: LTNNHTTSPLCFLGPQVSHMERK*FTGSFH Trigger: ATGGAAAGATCCAGTGAATCACTTTCTCTCCATGTG...GGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCCCTCCTCACCACAGTaGTGGAATATTATCTGTCTT | + |
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Preference number: 2 (lower is better) Translates to: PVLSASWGLKSPKGLLHLPSSPQ*WNIICL Trigger: AAGACAGATAATATTCCAGCACTGTGGTGAGGAGGG...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGAGTTCTCCGGGGTCCAGGTTGTATTTATCTCTGCTCTaGTCCTGTTGGCAACAACTG | + |
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Preference number: 2 (lower is better) Translates to: ICWLAGGSVFESSPGSRLYLSLL*SCWQQL Trigger: CAGTTGTTGCCAACAGGAGCAGAGCAGAGATAAATA...CAACCTGGACCCCGGAGAACTCTCAAACACTGAGCCACCAGCCAGCCAACAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGAGTTCTCCGGGGTCCAGGTTGCACAATATTTATCTCTaGTCTGCTCCTGTTGGCAAC | + |
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Preference number: 2 (lower is better) Translates to: ICWLAGGSVFESSPGSRLHNIYL*SAPVGN Trigger: GTTGCCAACAGGAGCAGAGCAGAGATAAATATTGTG...CAACCTGGACCCCGGAGAACTCTCAAACACTGAGCCACCAGCCAGCCAACAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCTGTCTCTCTGATTCTTTCAGGTaGTTGTTAGGCCTCACAGGG | + |
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Preference number: 2 (lower is better) Translates to: SLLPGASSLPRVCYIFCLSDSFR*LLGLTG Trigger: CCCTGTGAGGCCTAACAAGCACCTGAAAGAATCAGA...GAGACAGAAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCATAGGTCCACGGAATaGAATGGAGTCTATACTTAT | + |
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Preference number: 2 (lower is better) Translates to: PVLSASWGLKSPKGLLHLHRSTE*NGVYTY Trigger: ATAAGTATAGACTCCATTTCATTCCGTGGACCTATG...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | CTCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCTCTTGTTTTCCCAGCTaGTATCAAATACAAGTAGGA | + |
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Preference number: 2 (lower is better) Translates to: LTNNHTTSPLCFLGPQVSSCFPS*YQIQVG Trigger: TCCTACTTGTATTTGATAGCAGCTGGGAAAACAAGA...GGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCTGTCTCTATTTATCTCTGCTCTaGTCCTGTTGGCAACAACTG | + |
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Preference number: 2 (lower is better) Translates to: SLLPGASSLPRVCYIFCLYLSLL*SCWQQL Trigger: CAGTTGTTGCCAACAGGAGCAGAGCAGAGATAAATA...GAGACAGAAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | TATAGGTGTCAACAGCCTAATATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGTCTGATTCTTTCAGGTaGTTGTTAGGCCTCACAGGG | + |
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Preference number: 2 (lower is better) Translates to: YRCQQPNICWLAGGSVFESDSFR*LLGLTG Trigger: CCCTGTGAGGCCTAACAAGCACCTGAAAGAATCAGA...CTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCTGTTGACACCTATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCTGTCTCGAAACAAGATTGCAGTaGAGAAATGGGAAATGTAAG | + |
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Preference number: 2 (lower is better) Translates to: SLLPGASSLPRVCYIFCLETRLQ*RNGKCK Trigger: CTTACATTTCCCATTTCTTCACTGCAATCTTGTTTC...GAGACAGAAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTGTTGGGTTGTTTGCATaGACAATACATTCTATAGGC | + |
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Preference number: 2 (lower is better) Translates to: PVSKMMSSLTTTPPVLSAVGLFA*TIHSIG Trigger: GCCTATAGAATGTATTGTTCATGCAAACAACCCAAC...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTTCACAGCTACAAAACTaGCTTGTGTCTCAGAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: PVSKMMSSLTTTPPVLSASQLQN*LVSQKK Trigger: TTTCTTCTGAGACACAAGGCAGTTTTGTAGCTGTGA...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | TATAGGTGTCAACAGCCTAATATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGGTTGGGTTGTTTGCATaGACAATACATTCTATAGGC | + |
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Preference number: 2 (lower is better) Translates to: YRCQQPNICWLAGGSVFEVGLFA*TIHSIG Trigger: GCCTATAGAATGTATTGTTCATGCAAACAACCCAAC...CTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCTGTTGACACCTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTATAAGTATCTGCATCTaGTTCTTTCAGGTGCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: PVSKMMSSLTTTPPVLSAISICI*FFQVLV Trigger: AACAAGCACCTGAAAGAATCAGATGCAGATACTTAT...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | TATAGGTGTCAACAGCCTAATATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGTCACAGCTACAAAACTaGCTTGTGTCTCAGAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: YRCQQPNICWLAGGSVFESQLQN*LVSQKK Trigger: TTTCTTCTGAGACACAAGGCAGTTTTGTAGCTGTGA...CTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCTGTTGACACCTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CCA 90 bp | TATAGGTGTCAACAGCCTAATATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGTTGAATGTTATCACATaGAGAGAAAGTGATTCACTG | + |
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Preference number: 2 (lower is better) Translates to: YRCQQPNICWLAGGSVFELNVIT*RESDSL Trigger: CAGTGAATCACTTTCTCTCCATGTGATAACATTCAA...CTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCTGTTGACACCTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CAA 90 bp | GGAGATACTATCTTCGGTGATACCCTGCTTAGTTTCTGTAATGCTTaGACCCAGTATTTTCTTACCATGTTCCTATTTAATACTGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: GDTIFGDTLLSFCNA*TQYFLTMFLFNTGD Trigger: GTCCCCAGTATTAAATAGGAACATGGTAAGAAAATACTGGGTCAAAGCATTACAGAAACTAAGCAGGGTATCACCGAAGATAGTATCTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTTCTGTACCCTCCTCACCACAGTaGTGGAATATTATCTGTCTT | + |
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Preference number: 2 (lower is better) Translates to: QRITMEILSSVIPCLVSVPSSPQ*WNIICL Trigger: AAGACAGATAATATTCCAGCACTGTGGTGAGGAGGG...TACAGAAACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CCA 90 bp | GACTTGCAAGGCTCATGTGTAGTCCTTTGCAGTCATTGTTCTGGACAAAAATCTGTCCACGGAATGAAATaGAGTCTATACTTATCACAT | + |
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Preference number: 2 (lower is better) Translates to: DLQGSCVVLCSHCSGQKSVHGMK*SLYLSH Trigger: ATGTGATAAGTATAGACTCCATTTCATTCCGTGGAC...AGATTTTTGTCCAGAACAATGACTGCAAAGGACTACACATGAGCCTTGCAAGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CCA 90 bp | AACTCCCAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTGTCCACGGAATGAAATaGAGTCTATACTTATCACAT | + |
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Preference number: 2 (lower is better) Translates to: NSQRITMEILSSVIPCLVVHGMK*SLYLSH Trigger: ATGTGATAAGTATAGACTCCATTTCATTCCGTGGAC...AACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTGGGAGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | CTCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCGATTCTTTCAGGTGCTaGTTAGGCCTCACAGGGGGC | + |
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Preference number: 3 (lower is better) Translates to: LTNNHTTSPLCFLGPQVSDSFRC*LGLTGG Trigger: GCCCCCTGTGAGGCCTAACAAGCACCTGAAAGAATC...GGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CCA 72 bp | CGGGGTCCAGGTTGGTTGAGATTGCTGGTCTTTCCATaGGGTCACCATCCTCCTCACCTTCTCCCAGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: RGPGWLRLLVFP*GHHPPHLLPAF Trigger: GAAAGCTGGGAGAAGGTGAGGAGGATGGTGACCCCATGGAAAGACCAGCAATCTCAACCAACCTGGACCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTTCTCCGGGGTCCAGGTaGGTTGAGATTGCTGGTCTT | + |
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Preference number: 3 (lower is better) Translates to: PVLSASWGLKSPKGLLHLSPGSR*VEIAGL Trigger: AAGACCAGCAATCTCAACCAACCTGGACCCCGGAGA...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR GCA 72 bp | GATGTCCTCACTAACAACCACACCACCAGTCCTCTCTaGTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCT | + |
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Preference number: 3 (lower is better) Translates to: DVLTNNHTTSPL*FLGPQVSQGFA Trigger: AGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CCA 72 bp | GTGGCTCAGTGTTTGAGAGTTCTCCGGGGTCCAGGTTaGTTGAGATTGCTGGTCTTTCCATGGGGTCACCAT | + |
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Preference number: 3 (lower is better) Translates to: VAQCLRVLRGPG*LRLLVFPWGHH Trigger: ATGGTGACCCCATGGAAAGACCAGCAATCTCAACCAACCTGGACCCCGGAGAACTCTCAAACACTGAGCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | TCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCTGTCTCCCAGGTTGGTTGAGATaGCTGGTCTTTCCATGGGGT | + |
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Preference number: 3 (lower is better) Translates to: SLLPGASSLPRVCYIFCLPGWLR*LVFPWG Trigger: ACCCCATGGAAAGACCAGCAATCTCAACCAACCTGG...GAGACAGAAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CCA 72 bp | TCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTaGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTT | + |
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Preference number: 3 (lower is better) Translates to: SLTTTPPVLSAS*GLKSPKGLLHL Trigger: AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CCA 72 bp | TGCTATATAGGTGTCAACAGCCTAATATCTGTTGGCTaGCTGGTGGCTCAGTGTTTGAGAGTTCTCCGGGGT | + |
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Preference number: 3 (lower is better) Translates to: CYIGVNSLISVG*LVAQCLRVLRG Trigger: ACCCCGGAGAACTCTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCTGTTGACACCTATATAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CCA 72 bp | CCTCTGCTATATAGGTGTCAACAGCCTAATATCTGTTaGCTGGCTGGTGGCTCAGTGTTTGAGAGTTCTCCG | + |
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Preference number: 3 (lower is better) Translates to: PLLYRCQQPNIC*LAGGSVFESSP Trigger: CGGAGAACTCTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCTGTTGACACCTATATAGCAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | ATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGAGTTCTCCGGGGTCCAGGTTGGAAATAGAAAAGGAGTaGGGTTGTTTGCATGAACAA | + |
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Preference number: 3 (lower is better) Translates to: ICWLAGGSVFESSPGSRLEIEKE*GCLHEQ Trigger: TTGTTCATGCAAACAACCCAACTCCTTTTCTATTTC...CAACCTGGACCCCGGAGAACTCTCAAACACTGAGCCACCAGCCAGCCAACAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTAAGTCTCCCAAGGGTTaGCTACATCTTCTGTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: PVSKMMSSLTTTPPVLSAKSPKG*LHLLSL Trigger: CAGAGACAGAAGATGTAGCAAACCCTTGGGAGACTT...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTAGTCCTTTGCAGTCATaGTTCTGGACAAAAATCTTC | + |
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Preference number: 3 (lower is better) Translates to: PVSKMMSSLTTTPPVLSASPLQS*FWTKIF Trigger: GAAGATTTTTGTCCAGAACAATGACTGCAAAGGACT...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | TATAGGTGTCAACAGCCTAATATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGAGCAAAGTGAATCTCTaGTTTTCCCAGCTGCTATCA | + |
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Preference number: 3 (lower is better) Translates to: YRCQQPNICWLAGGSVFESKVNL*FSQLLS Trigger: TGATAGCAGCTGGGAAAACAAGAGATTCACTTTGCT...CTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCTGTTGACACCTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTAGCTACAAAACTGCCTaGTGTCTCAGAAGAAACATT | + |
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Preference number: 3 (lower is better) Translates to: PVSKMMSSLTTTPPVLSASYKTA*CLRRNI Trigger: AATGTTTCTTCTGAGACACAAGGCAGTTTTGTAGCT...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | AGCAAAGTGAATCTCTTGTTTTCCCAGCTGCTATCAAATACAAGTAGGATTTCCCTCATGTGTAGTCCTTaGCAGTCATTGTTCTGGACA | + |
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Preference number: 3 (lower is better) Translates to: SKVNLLFSQLLSNTSRISLMCSP*QSLFWT Trigger: TGTCCAGAACAATGACTGCAAAGGACTACACATGAG...GGAAATCCTACTTGTATTTGATAGCAGCTGGGAAAACAAGAGATTCACTTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | AACTCCCAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTCTCATGTGTAGTCCTTaGCAGTCATTGTTCTGGACA | + |
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Preference number: 3 (lower is better) Translates to: NSQRITMEILSSVIPCLVLMCSP*QSLFWT Trigger: TGTCCAGAACAATGACTGCAAAGGACTACACATGAG...AACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTGGGAGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | CAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTTCTGTAAGCAAAGTGAATCTCTaGTTTTCCCAGCTGCTATCA | + |
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Preference number: 3 (lower is better) Translates to: QRITMEILSSVIPCLVSVSKVNL*FSQLLS Trigger: TGATAGCAGCTGGGAAAACAAGAGATTCACTTTGCT...TACAGAAACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR-3UTR CAA 90 bp | AACTCCCAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTAGCTACAAAACTGCCTaGTGTCTCAGAAGAAACATT | + |
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Preference number: 3 (lower is better) Translates to: NSQRITMEILSSVIPCLVSYKTA*CLRRNI Trigger: AATGTTTCTTCTGAGACACAAGGCAGTTTTGTAGCT...AACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTGGGAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR GCA 72 bp | AAACATACTGACTTGCAAGGCTCATGTGTAGTCCTTTaGAGTCATTGTTCTGGACAAAAATCTTCAAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: KHTDLQGSCVVL*SHCSGQKSSRE Trigger: TTCTCTTGAAGATTTTTGTCCAGAACAATGACTGCAAAGGACTACACATGAGCCTTGCAAGTCAGTATGTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR GCA 72 bp | GTTCTAGTGAGTGACACTGAATGCATTCAGCCTAATTaGTACTCATATAGTTATAGCAAAGTGAATCTCTTG | + |
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Preference number: 3 (lower is better) Translates to: VLVSDTECIQPN*YSYSYSKVNLL Trigger: CAAGAGATTCACTTTGCTATAACTATATGAGTAGCAATTAGGCTGAATGCATTCAGTGTCACTCACTAGAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR TCA 72 bp | TCTTCGGTGATACCCTGCTTAGTTTCTGTAATGCTTTaGCCCAGTATTTTCTTACCATGTTCCTATTTAATA | + |
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Preference number: 3 (lower is better) Translates to: SSVIPCLVSVML*PSIFLPCSYLI Trigger: TATTAAATAGGAACATGGTAAGAAAATACTGGGTCAAAGCATTACAGAAACTAAGCAGGGTATCACCGAAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR TCA 72 bp | TTCAGCCTAATTGCTACTCATATAGTTATAGCAAAGTaGATCTCTTGTTTTCCCAGCTGCTATCAAATACAA | + |
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Preference number: 3 (lower is better) Translates to: FSLIATHIVIAK*ISCFPSCYQIQ Trigger: TTGTATTTGATAGCAGCTGGGAAAACAAGAGATTCACTTTGCTATAACTATATGAGTAGCAATTAGGCTGAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR TCA 72 bp | AAACAAGATTGCAGTGAAGAAATGGGAAATGTAAGGTaGCAGATTGTTGAGATACTGAGAAATAAGAATCAC | + |
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Preference number: 3 (lower is better) Translates to: KQDCSEEMGNVR*QIVEILRNKNH Trigger: GTGATTCTTATTTCTCAGTATCTCAACAATCTGTCACCTTACATTTCCCATTTCTTCACTGCAATCTTGTTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTAGAGACAGGTGGTGCTaGTGGACATGCTCCTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: PVLSASWGLKSPKGLLHLRDRWC*WTCSCQ Trigger: TTGGCAGGAGCATGTCCATCAGCACCACCTGTCTCT...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CAA 72 bp | GGTGGCTCAGTGTTTGAGAGTTCTCCGGGGTCCAGGTaGGTTGAGATTGCTGGTCTTTCCATGGGGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: GGSVFESSPGSR*VEIAGLSMGSP Trigger: TGGTGACCCCATGGAAAGACCAGCAATCTCAACCAACCTGGACCCCGGAGAACTCTCAAACACTGAGCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTAGGTGCAAACCAGGGTaGGGATTTTCTGTGTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: PVLSASWGLKSPKGLLHLRCKPG*GFSVWL Trigger: GAGCCACACAGAAAATCCTCACCCTGGTTTGCACCT...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CAA 72 bp | GCTCAGTGTTTGAGAGTTCTCCGGGGTCCAGGTTGGTaGAGATTGCTGGTCTTTCCATGGGGTCACCATCCT | + |
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Preference number: 4 (lower is better) Translates to: AQCLRVLRGPGW*RLLVFPWGHHP Trigger: AGGATGGTGACCCCATGGAAAGACCAGCAATCTCAACCAACCTGGACCCCGGAGAACTCTCAAACACTGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CAA 72 bp | AGCCTAATATCTGTTGGCTGGCTGGTGGCTCAGTGTTaGAGAGTTCTCCGGGGTCCAGGTTGGTTGAGATTG | + |
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Preference number: 4 (lower is better) Translates to: SLISVGWLVAQC*RVLRGPGWLRL Trigger: CAATCTCAACCAACCTGGACCCCGGAGAACTCTCAAACACTGAGCCACCAGCCAGCCAACAGATATTAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CCA 90 bp | ATCTGTTGGCTGGCTGGTGGCTCAGTGTTTGAGAGTTCTCCGGGGTCCAGGTTGACATCATTGAAGAACTaGTTCCAACCAAAAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: ICWLAGGSVFESSPGSRLTSLKN*FQPKAA Trigger: GGCAGCTTTTGGTTGGAACCAGTTCTTCAATGATGT...CAACCTGGACCCCGGAGAACTCTCAAACACTGAGCCACCAGCCAGCCAACAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTTGCATCCAACATCATTaGAGAACTGGTTCCAACCAA | + |
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Preference number: 4 (lower is better) Translates to: PVLSASWGLKSPKGLLHLCIQHH*RTGSNQ Trigger: TTGGTTGGAACCAGTTCTTCAATGATGTTGGATGCA...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTTCTGAACTAAGAGTATaGTTCCTATTGCCATGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PVLSASWGLKSPKGLLHLSELRV*FLLPCS Trigger: GGAACATGGCAATAGGAATCATACTCTTAGTTCAGA...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | TCCAGGTTGGTTGAGATTGCTGGTCTTTCCATGGGGTCACCATCCTCCTCACCTACTTTGTCACGACCTTaGGAGAGGCAGAATTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: SRLVEIAGLSMGSPSSSPTLSRP*ERQNSK Trigger: TTTTGAATTCTGCCTCTCTCAAGGTCGTGACAAAGT...AGGTGAGGAGGATGGTGACCCCATGGAAAGACCAGCAATCTCAACCAACCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | TCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCTGTCTCCCAACTGGGGTTATGTaGAAGAGCAATATAACCTTG | + |
|
Preference number: 4 (lower is better) Translates to: SLLPGASSLPRVCYIFCLPTGVM*KSNITL Trigger: CAAGGTTATATTGCTCTTTCACATAACCCCAGTTGG...GAGACAGAAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CCA 90 bp | CTCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCTTTTGCTGTTCCTTTTaGTGGATGCATTCAAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LTNNHTTSPLCFLGPQVSFCCSF*WMHSKE Trigger: TTCCTTTGAATGCATCCACCAAAAGGAACAGCAAAA...GGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CCA 90 bp | CCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTTGCTGTTCCTTTTGGTaGATGCATTCAAAGGAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: PVLSASWGLKSPKGLLHLCCSFW*MHSKEK Trigger: TTTTTCCTTTGAATGCATCCACCAAAAGGAACAGCA...AAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | GACTTGCAAGGCTCATGTGTAGTCCTTTGCAGTCATTGTTCTGGACAAAAATCTAGGTGCAAACCAGGGTaGGGATTTTCTGTGTGGCTC | + |
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Preference number: 4 (lower is better) Translates to: DLQGSCVVLCSHCSGQKSRCKPG*GFSVWL Trigger: GAGCCACACAGAAAATCCTCACCCTGGTTTGCACCT...AGATTTTTGTCCAGAACAATGACTGCAAAGGACTACACATGAGCCTTGCAAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR GCA 90 bp | TCCAGGTTGGTTGAGATTGCTGGTCTTTCCATGGGGTCACCATCCTCCTCACCTAGGGAATACCCAAAATaGTATGTACACTGTATCTAC | + |
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Preference number: 4 (lower is better) Translates to: SRLVEIAGLSMGSPSSSPREYPK*YVHCIY Trigger: GTAGATACAGTGTACATAGCATTTTGGGTATTCCCT...AGGTGAGGAGGATGGTGACCCCATGGAAAGACCAGCAATCTCAACCAACCTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CCA 90 bp | GACTTGCAAGGCTCATGTGTAGTCCTTTGCAGTCATTGTTCTGGACAAAAATCTAAAGCTGCCATTATCTaGGCAGGACCTTTGGAGAGA | + |
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Preference number: 4 (lower is better) Translates to: DLQGSCVVLCSHCSGQKSKAAII*AGPLER Trigger: TCTCTCCAAAGGTCCTGCCCAGATAATGGCAGCTTT...AGATTTTTGTCCAGAACAATGACTGCAAAGGACTACACATGAGCCTTGCAAGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000233982.2 |
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| CDS-3UTR CCA 90 bp | CCTGTCTCAAAGATGATGTCCTCACTAACAACCACACCACCAGTCCTCTCTGCTTTTTGCTGTTCCTTTTaGTGGATGCATTCAAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: PVSKMMSSLTTTPPVLSAFCCSF*WMHSKE Trigger: TTCCTTTGAATGCATCCACCAAAAGGAACAGCAAAA...AGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAGGACATCATCTTTGAGACAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| 3UTR CAA 72 bp | CTCCCTCCTCACCACAGTGCTGGAATATTATCTGTCTaGAACTTGCATAGGTCTTGTGTACACCAAAACATA | + |
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Preference number: 4 (lower is better) Translates to: LPPHHSAGILSV*NLHRSCVHQNI Trigger: TATGTTTTGGTGTACACAAGACCTATGCAAGTTCAAGACAGATAATATTCCAGCACTGTGGTGAGGAGGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | AACTCCCAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTTGCATCCAACATCATTaGAGAACTGGTTCCAACCAA | + |
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Preference number: 4 (lower is better) Translates to: NSQRITMEILSSVIPCLVCIQHH*RTGSNQ Trigger: TTGGTTGGAACCAGTTCTTCAATGATGTTGGATGCA...AACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTGGGAGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR TCA 90 bp | AACTCCCAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTCCAACTGGGGTTATGTaGAAGAGCAATATAACCTTG | + |
|
Preference number: 4 (lower is better) Translates to: NSQRITMEILSSVIPCLVPTGVM*KSNITL Trigger: CAAGGTTATATTGCTCTTTCACATAACCCCAGTTGG...AACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTGGGAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CCA 90 bp | GACTTGCAAGGCTCATGTGTAGTCCTTTGCAGTCATTGTTCTGGACAAAAATCTTGCTGTTCCTTTTGGTaGATGCATTCAAAGGAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: DLQGSCVVLCSHCSGQKSCCSFW*MHSKEK Trigger: TTTTTCCTTTGAATGCATCCACCAAAAGGAACAGCA...AGATTTTTGTCCAGAACAATGACTGCAAAGGACTACACATGAGCCTTGCAAGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CCA 90 bp | CAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTTCTGTAACATCATTGAAGAACTaGTTCCAACCAAAAGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: QRITMEILSSVIPCLVSVTSLKN*FQPKAA Trigger: GGCAGCTTTTGGTTGGAACCAGTTCTTCAATGATGT...TACAGAAACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CAA 90 bp | CTCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCATCTGGGCAGGACCTTaGGAGAGAATGATCAAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LTNNHTTSPLCFLGPQVSIWAGP*ERMIKK Trigger: CTTCTTGATCATTCTCTCCAAAGGTCCTGCCCAGAT...GGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233982.2 |
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| CDS-3UTR CAA 90 bp | CTCACTAACAACCACACCACCAGTCCTCTCTGCTTCCTGGGGCCTCAAGTCTCCTGTGCTAAGAATACCTaGAACCCTCTTCTTGTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: LTNNHTTSPLCFLGPQVSCAKNT*NPLLVS Trigger: GGACACAAGAAGAGGGTTCAAGGTATTCTTAGCACA...GGAGACTTGAGGCCCCAGGAAGCAGAGAGGACTGGTGGTGTGGTTGTTAGTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CAA 90 bp | TCTCTGCTTCCTGGGGCCTCAAGTCTCCCAAGGGTTTGCTACATCTTCTGTCTCTTGCATCCAACATCATaGAAGAACTGGTTCCAACCA | + |
|
Preference number: 5 (lower is better) Translates to: SLLPGASSLPRVCYIFCLLHPTS*KNWFQP Trigger: TGGTTGGAACCAGTTCTTCAATGATGTTGGATGCAA...GAGACAGAAGATGTAGCAAACCCTTGGGAGACTTGAGGCCCCAGGAAGCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CAA 90 bp | TCCAGGTTGGTTGAGATTGCTGGTCTTTCCATGGGGTCACCATCCTCCTCACCTTTGCATCCAACATCATaGAAGAACTGGTTCCAACCA | + |
|
Preference number: 5 (lower is better) Translates to: SRLVEIAGLSMGSPSSSPLHPTS*KNWFQP Trigger: TGGTTGGAACCAGTTCTTCAATGATGTTGGATGCAA...AGGTGAGGAGGATGGTGACCCCATGGAAAGACCAGCAATCTCAACCAACCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS-3UTR CAA 90 bp | CAAAGAATAACTATGGAGATACTATCTTCGGTGATACCCTGCTTAGTTTCTGTATGTGCTAAGAATACCTaGAACCCTCTTCTTGTGTCC | + |
|
Preference number: 5 (lower is better) Translates to: QRITMEILSSVIPCLVSVCAKNT*NPLLVS Trigger: GGACACAAGAAGAGGGTTCAAGGTATTCTTAGCACA...TACAGAAACTAAGCAGGGTATCACCGAAGATAGTATCTCCATAGTTATTCTTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000233346.2 ENSMUST00000233982.2 |
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| CDS GCA 72 bp | TCCAACATCATTGAAGAACTGGTTCCAACCAAAAGCTaGCATTATCTGGGCAGGACCTTTGGAGAGAATGAT | + |
|
Preference number: 6 (lower is better) Translates to: SNIIEELVPTKS*HYLGRTFGEND Trigger: ATCATTCTCTCCAAAGGTCCTGCCCAGATAATGGCAGCTTTTGGTTGGAACCAGTTCTTCAATGATGTTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061660.2 ENSMUST00000233982.2 |
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| CDS CAA 72 bp | TTCCAACCAAAAGCTGCCATTATCTGGGCAGGACCTTaGGAGAGAATGATCAAGAAGTTTGATGTGAACACA | + |
|
Preference number: 6 (lower is better) Translates to: FQPKAAIIWAGP*ERMIKKFDVNT Trigger: TGTGTTCACATCAAACTTCTTGATCATTCTCTCCAAAGGTCCTGCCCAGATAATGGCAGCTTTTGGTTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061660.2 ENSMUST00000233982.2 |
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| CDS TCA 72 bp | GCTATGTACACTGTATCTACTACTTTGTCACGACCTTaGGAGAGGCAGAATTCAAAACCTCTCTTTTGTGTC | + |
|
Preference number: 6 (lower is better) Translates to: AMYTVSTTLSRP*ERQNSKPLFCV Trigger: GACACAAAAGAGAGGTTTTGAATTCTGCCTCTCTCAAGGTCGTGACAAAGTAGTAGATACAGTGTACATAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000061660.2 ENSMUST00000233346.2 ENSMUST00000233982.2 |
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