RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R223 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069280

Ensembl transcript IDs: ENSMUST00000091719.2, ENSMUST00000235331.2, ENSMUST00000236495.2, ENSMUST00000238002.2

Found 183 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACTTGCTCTCCTGCTCATTAGAACAGCCTCTGCTACATAGCAAGTaGTTTGTAAATAGAGGAGTTGGTGATCAAGGAAGTACATTAGAT +
Preference number: 1 (lower is better)
Translates to: HLLSCSLEQPLLHSK*FVNRGVGDQGSTLD
Trigger: ATCTAATGTACTTCCTTGATCACCAACTCCTCTATTTACAAAGCACTTGCTATGTAGCAGAGGCTGTTCTAATGAGCAGGAGAGCAAGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 90 bp CTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATaGTACAAAGCAAACATTGTGTTTCCCACCTCTAATATTCATGTA +
Preference number: 1 (lower is better)
Translates to: LMQLKINLCNFQVSL*YKANIVFPTSNIHV
Trigger: TACATGAATATTAGAGGTGGGAAACACAATGTTTGCTTTGTAGCATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 90 bp TATTCCAAACTGCGATGGCATTGTCTAAAAGATGATATTTCTCCATaGTTCCCTATATATTTCACGACCACATATCAATGTTTTGATGTG +
Preference number: 1 (lower is better)
Translates to: YSKLRWHCLKDDISP*FPIYFTTTYQCFDV
Trigger: CACATCAAAACATTGATATGTGGTCGTGAAATATATAGGGAAGCATGGAGAAATATCATCTTTTAGACAATGCCATCGCAGTTTGGAATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGGCGGAGAAACTGCAGTaGGCTGATGGGAAGCTTTGG +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQAEKLQ*ADGKLW
Trigger: CCAAAGCTTCCCATCAGCTCACTGCAGTTTCTCCGC...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGTGCTTGCCCAGGCTGTaGCAACTGGGGTCTACTAAG +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQCLPRL*QLGSTK
Trigger: CTTAGTAGACCCCAGTTGGCACAGCCTGGGCAAGCA...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGGTAAGCCCTAATGATTaGGAACCAGTAGCTGGGGCA +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQVSPND*EPVAGA
Trigger: TGCCCCAGCTACTGGTTCTCAATCATTAGGGCTTAC...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGACTGTTGTCTTCACTTaGCCCTGCAAGCTCACCTCA +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQTVVFT*PCKLTS
Trigger: TGAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGCTTCACTTGCTCTCCTaGTCATTAGAACAGCCTCTG +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQLHLLS*SLEQPL
Trigger: CAGAGGCTGTTCTAATGAGCAGGAGAGCAAGTGAAG...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATAGTATGTGGCTGGCATaGAAGGGGCAAGGTGAGCTA +
Preference number: 2 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDSMWLA*KGQGEL
Trigger: TAGCTCACCTTGCCCCTTGCATGCCAGCCACATACT...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAGTCTTCACTTGGCCCTaGAAGCTCACCTCAGATAAG +
Preference number: 2 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAVFTWP*KLTSDK
Trigger: CTTATCTGAGGTGAGCTTGCAGGGCCAAGTGAAGAC...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 90 bp TCTGGACACTTTCTGGATCCTCCAGATTCTTTCAAACCTGAGGCCTaGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCCCAGGCTG +
Preference number: 2 (lower is better)
Translates to: SGHFLDPPDSFKPEA*ELSGPPMSCCLPRL
Trigger: CAGCCTGGGCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAGAATCTGGAGGATCCAGAAAGTGTCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGGGGGCACAATGCTCCTaGGGTGTTTTTATACATCAT +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQGAQCS*GVFIHH
Trigger: ATGATGTATAAAAACACCTCAGGAGCATTGTGCCCC...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCATGCTTGGTACAGCAATaGCAAGCACTTAGTAGCTGC +
Preference number: 2 (lower is better)
Translates to: GGALTQLRAVRSLPGMTACLVQQ*QALSSC
Trigger: GCAGCTACTAAGTGCTTGGCATTGCTGTACCAAGCA...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATACTGTTGTCTTCACTTaGCCCTGCAAGCTCACCTCA +
Preference number: 2 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDTVVFT*PCKLTS
Trigger: TGAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGT...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGGGTCTGGACACTTTCTaGATCCTCCAGATTCTTTCA +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQGLDTF*ILQILS
Trigger: TGAAAGAATCTGGAGGATCCAGAAAGTGTCCAGACC...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAGGGGCACAATGCTCCTaGGGTGTTTTTATACATCAT +
Preference number: 2 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAGAQCS*GVFIHH
Trigger: ATGATGTATAAAAACACCTCAGGAGCATTGTGCCCC...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCATGCAGCAAGCTAAACTaGATGATAGGAATGGTGGGA +
Preference number: 2 (lower is better)
Translates to: GGALTQLRAVRSLPGMTACSKLN*MIGMVG
Trigger: TCCCACCATTCCTATCATGCAGTTTAGCTTGCTGCA...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATCTTCACTTGCTCTCCTaGTCATTAGAACAGCCTCTG +
Preference number: 2 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDLHLLS*SLEQPL
Trigger: CAGAGGCTGTTCTAATGAGCAGGAGAGCAAGTGAAG...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCGTCTTCACTTGGCCCTaGAAGCTCACCTCAGATAAG +
Preference number: 2 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACVFTWP*KLTSDK
Trigger: CTTATCTGAGGTGAGCTTGCAGGGCCAAGTGAAGAC...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGGGGCCTCCAATGTCCTaGTGCTTGCCCAGGCTGTGC +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGGPPMS*CLPRLC
Trigger: GCACAGCCTGGGCAAGCAGCAGGACATTGGAGGCCC...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
52% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGGCATTGTCTAAAAGATaGTATTTCTCCATGCTTCCC +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQALSKR*YFSMLP
Trigger: GGGAAGCATGGAGAAATATCATCTTTTAGACAATGC...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATCAGTATTTGGGGTGCTaGTGCAACTCAAGATCAACT +
Preference number: 2 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDQYLGC*CNSRST
Trigger: AGTTGATCTTGAGTTGCATCAGCACCCCAAATACTG...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAGGGCCTCCAATGTCCTaGTGCTTGCCCAGGCTGTGC +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAGPPMS*CLPRLC
Trigger: GCACAGCCTGGGCAAGCAGCAGGACATTGGAGGCCC...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGATAAAGGATGCTTCCTaGCATTCCTCTTCTTCACTT +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQIKDAS*HSSSSL
Trigger: AAGTGAAGAAGAGGAATGCCAGGAAGCATCCTTTAT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGATTAGCTTCTCTCCCTaGTCATCTCCACTTTATAAG +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQISFSP*SSPLYK
Trigger: CTTATAAAGTGGAGATGACCAGGGAGAGAAGCTAAT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGACAGGGATTTTGGAATaGGAAGGTAGTAAGAATCCA +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQTGILE*EGSKNP
Trigger: TGGATTCTTACTACCTTCCCATTCCAAAATCCCTGT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAAGATCTCAAGAACACTaGGATGTTCAGAACAGGTCA +
Preference number: 2 (lower is better)
Translates to: GGALTQLRAVRSLPGMTARSQEH*DVQNRS
Trigger: TGACCTGTTCTGAACATCCCAGTGTTCTTGAGATCT...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCGGGGCACAATGCTCCTaGGGTGTTTTTATACATCAT +
Preference number: 2 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACGAQCS*GVFIHH
Trigger: ATGATGTATAAAAACACCTCAGGAGCATTGTGCCCC...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCAGGCAAATGGCAATTTaGTGGGGGAGGCTTGTTATT +
Preference number: 2 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACRQMAI*WGRLVI
Trigger: AATAACAAGCCTCCCCCATCAAATTGCCATTTGCCT...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATTTCCAGGTCAGCCTATaGTACAAAGCAAACATTGTG +
Preference number: 2 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDFQVSL*YKANIV
Trigger: CACAATGTTTGCTTTGTAGCATAGGCTGACCTGGAA...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCCTCAAGATCAACTTGTaGAACTTCCAGGTCAGCCTA +
Preference number: 2 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACLKINL*NFQVSL
Trigger: TAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAG...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGAATCCACTTTCCACCTaGCTAGAAATCTTGAACAAA +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQNPLST*LEILNK
Trigger: TTTGTTCAAGATTTCTAGGCAGGTGGAAAGTGGATT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCAATGTCCTGCTGCTTaGCCAGGCTGTGCCAACTGG +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGQCPAA*PGCANW
Trigger: CCAGTTGGCACAGCCTGGGCAAGCAGCAGGACATTG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGAAGACATTAAGAACATaGACATCTCTGCTGATCAGA +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQKTLRT*TSLLIR
Trigger: TCTGATCAGCAGAGATGTCCATGTTCTTAATGTCTT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATAGATCTCAAGAACACTaGGATGTTCAGAACAGGTCA +
Preference number: 2 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDRSQEH*DVQNRS
Trigger: TGACCTGTTCTGAACATCCCAGTGTTCTTGAGATCT...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAGAAGCCTCCCTGGGATaGCTGCAGTGCAGTGTCTTG +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAEASLG*LQCSVL
Trigger: CAAGACACTGCACTGCAGTCATCCCAGGGAGGCTTC...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGGCGGAGAAACTGCAGTaGGCTGATGGGAAGCTTTGG +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGAEKLQ*ADGKLW
Trigger: CCAAAGCTTCCCATCAGCTCACTGCAGTTTCTCCGC...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCCTACCTACCTTATCTTaGTTTCCAATATGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACLPTLS*FPIWLW
Trigger: CCAGAGCCATATTGGAAAGCAAGATAAGGTAGGTAG...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAAAGACATTAAGAACATaGACATCTCTGCTGATCAGA +
Preference number: 2 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAKTLRT*TSLLIR
Trigger: TCTGATCAGCAGAGATGTCCATGTTCTTAATGTCTT...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGTCTTGCTTTCCAATATaGCTCTGGAGAAAAATGAAA +
Preference number: 2 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQSCFPI*LWRKMK
Trigger: TTTCATTTTTCTCCAGAGCCATATTGGAAAGCAAGA...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTGTAAGCCCTAATGATTaGGAACCAGTAGCTGGGGCA +
Preference number: 2 (lower is better)
Translates to: TKANGNLMGEACYSSIWGVSPND*EPVAGA
Trigger: TGCCCCAGCTACTGGTTCTCAATCATTAGGGCTTAC...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGTGCAGCAAGCTAAACTaGATGATAGGAATGGTGGGA +
Preference number: 2 (lower is better)
Translates to: WGADATQDQLVQLPGQPMCSKLN*MIGMVG
Trigger: TCCCACCATTCCTATCATGCAGTTTAGCTTGCTGCA...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGAGTATGTGGCTGGCATaGAAGGGGCAAGGTGAGCTA +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGSMWLA*KGQGEL
Trigger: TAGCTCACCTTGCCCCTTGCATGCCAGCCACATACT...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTTGCTTGCCCAGGCTGTaGCAACTGGGGTCTACTAAG +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSCLPRL*QLGSTK
Trigger: CTTAGTAGACCCCAGTTGGCACAGCCTGGGCAAGCA...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGCAGTTCTTTAGTGCTTaGTACAGCAATGCCAAGCAC +
Preference number: 2 (lower is better)
Translates to: WGADATQDQLVQLPGQPMQFFSA*YSNAKH
Trigger: GTGCTTGGCATTGCTGTACCAAGCACTAAAGAACTG...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTAGTCAGAAGCCTCCCTaGGATGACTGCAGTGCAGTG +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSSQKPP*DDCSAV
Trigger: CACTGCACTGCAGTCATCCCAGGGAGGCTTCTGACT...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTGTGAACAGCCCTCCATaGCCCTGCATCCCTTTAGGA +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSVNSPP*PCIPLG
Trigger: TCCTAAAGGGATGCAGGGCCATGGAGGGCTGTTCAC...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGGTATTTCCTGATGAATaGTGCAGCAAGCTAAACTGC +
Preference number: 2 (lower is better)
Translates to: WGADATQDQLVQLPGQPMVFPDE*CSKLNC
Trigger: GCAGTTTAGCTTGCTGCATCATTCATCAGGAAATAC...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTACTTTGCTGGGCCTTTaGGCCAGTGAACCTTACCAG +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSTLLGL*ASEPYQ
Trigger: CTGGTAAGGTTCACTGGCTCAAAGGCCCAGCAAAGT...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGCTAATTCCAGTTGACTaGATGCTCTCCTGTATTTCC +
Preference number: 2 (lower is better)
Translates to: WGADATQDQLVQLPGQPMLIPVD*MLSCIS
Trigger: GGAAATACAGGAGAGCATGCAGTCAACTGGAATTAG...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCCTGCTACATAGCAAGTaGTTTGTAAATAGAGGAGTT +
Preference number: 2 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACLLHSK*FVNRGV
Trigger: AACTCCTCTATTTACAAAGCACTTGCTATGTAGCAG...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAAGTATGTGGCTGGCATaGAAGGGGCAAGGTGAGCTA +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETASMWLA*KGQGEL
Trigger: TAGCTCACCTTGCCCCTTGCATGCCAGCCACATACT...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGACTGTTGTCTTCACTTaGCCCTGCAAGCTCACCTCA +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGTVVFT*PCKLTS
Trigger: TGAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGT...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCAGAGACGCACAGCCTaGCCTATCTCTTGGTTTAGT +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGQRRTA*PISWFS
Trigger: ACTAAACCAAGAGATAGGCCAGGCTGTGCGTCTCTG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 90 bp ATTGATCAAATTTGCTTGGTTGTGGTGACTTTGTTAGTCTCACTGTaGTCTTCACTTGGCCCTGCAAGCTCACCTCAGATAAGGGCCATC +
Preference number: 2 (lower is better)
Translates to: IDQICLVVVTLLVSL*SSLGPASSPQIRAI
Trigger: GATGGCCCTTATCTGAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAAAGTCACCACAACCAAGCAAATTTGATCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTGTAAGCCCTAATGATTaGGAACCAGTAGCTGGGGCA +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSVSPND*EPVAGA
Trigger: TGCCCCAGCTACTGGTTCTCAATCATTAGGGCTTAC...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCTTCACTTGCTCTCCTaGTCATTAGAACAGCCTCTG +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGLHLLS*SLEQPL
Trigger: CAGAGGCTGTTCTAATGAGCAGGAGAGCAAGTGAAG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAGTCTTCACTTGGCCCTaGAAGCTCACCTCAGATAAG +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAVFTWP*KLTSDK
Trigger: CTTATCTGAGGTGAGCTTGCAGGGCCAAGTGAAGAC...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGATAAAGGATGCTTCCTaGCATTCCTCTTCTTCACTT +
Preference number: 2 (lower is better)
Translates to: WGADATQDQLVQLPGQPMIKDAS*HSSSSL
Trigger: AAGTGAAGAAGAGGAATGCCAGGAAGCATCCTTTAT...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTCAGTTCTTTAGTGCTTaGTACAGCAATGCCAAGCAC +
Preference number: 2 (lower is better)
Translates to: TKANGNLMGEACYSSIWGQFFSA*YSNAKH
Trigger: GTGCTTGGCATTGCTGTACCAAGCACTAAAGAACTG...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCAGTATTTGGGGTGCTaGTGCAACTCAAGATCAACT +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGQYLGC*CNSRST
Trigger: AGTTGATCTTGAGTTGCATCAGCACCCCAAATACTG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGAGGCAAATGGCAATTTaGTGGGGGAGGCTTGTTATT +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGRQMAI*WGRLVI
Trigger: AATAACAAGCCTCCCCCATCAAATTGCCATTTGCCT...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGAAGCTAAAAGCCACATaGCAGGGATTTTGGAATGGG +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGKLKAT*QGFWNG
Trigger: CCCATTCCAAAATCCCTGTCATGTGGCTTTTAGCTT...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTTTCCAGTTGACTGCATaGTCTCCTGTATTTCCTGAT +
Preference number: 2 (lower is better)
Translates to: TKANGNLMGEACYSSIWGFQLTA*SPVFPD
Trigger: ATCAGGAAATACAGGAGAGCATGCAGTCAACTGGAA...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGCTGCTACATAGCAAGTaGTTTGTAAATAGAGGAGTT +
Preference number: 2 (lower is better)
Translates to: WGADATQDQLVQLPGQPMLLHSK*FVNRGV
Trigger: AACTCCTCTATTTACAAAGCACTTGCTATGTAGCAG...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCATGCTTGGTACAGCAATaGCAAGCACTTAGTAGCTGC +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETACLVQQ*QALSSC
Trigger: GCAGCTACTAAGTGCTTGGCATTGCTGTACCAAGCA...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTTTCCAGGTCAGCCTATaGTACAAAGCAAACATTGTG +
Preference number: 2 (lower is better)
Translates to: TKANGNLMGEACYSSIWGFQVSL*YKANIV
Trigger: CACAATGTTTGCTTTGTAGCATAGGCTGACCTGGAA...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGAAGACATTAAGAACATaGACATCTCTGCTGATCAGA +
Preference number: 2 (lower is better)
Translates to: WGADATQDQLVQLPGQPMKTLRT*TSLLIR
Trigger: TCTGATCAGCAGAGATGTCCATGTTCTTAATGTCTT...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 90 bp ACCAGTAGCTGGGGCACAATGCTCCTGAGGTGTTTTTATACATCATaGTGTACTGGAGTGAAGGTCTTAAGTAGAGCTTGTATTCCAAAC +
Preference number: 2 (lower is better)
Translates to: TSSWGTMLLRCFYTS*CTGVKVLSRACIPN
Trigger: GTTTGGAATACAAGCTCTACTTAAGACCTTCACTCCAGTACACAATGATGTATAAAAACACCTCAGGAGCATTGTGCCCCAGCTACTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGGTATTTCCTGATGAATaGTGCAGCAAGCTAAACTGC +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGVFPDE*CSKLNC
Trigger: GCAGTTTAGCTTGCTGCATCATTCATCAGGAAATAC...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATACAGTATTTGGGGTGCTaGTGCAACTCAAGATCAACT +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIQYLGC*CNSRST
Trigger: AGTTGATCTTGAGTTGCATCAGCACCCCAAATACTG...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAAGGCAAATGGCAATTTaGTGGGGGAGGCTTGTTATT +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIRQMAI*WGRLVI
Trigger: AATAACAAGCCTCCCCCATCAAATTGCCATTTGCCT...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAAAGCTAAAAGCCACATaGCAGGGATTTTGGAATGGG +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAKLKAT*QGFWNG
Trigger: CCCATTCCAAAATCCCTGTCATGTGGCTTTTAGCTT...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAAAGCTAAAAGCCACATaGCAGGGATTTTGGAATGGG +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIKLKAT*QGFWNG
Trigger: CCCATTCCAAAATCCCTGTCATGTGGCTTTTAGCTT...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATATGCAGCAAGCTAAACTaGATGATAGGAATGGTGGGA +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDICSKLN*MIGMVG
Trigger: TCCCACCATTCCTATCATGCAGTTTAGCTTGCTGCA...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCTAATTCCAGTTGACTaGATGCTCTCCTGTATTTCC +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGLIPVD*MLSCIS
Trigger: GGAAATACAGGAGAGCATGCAGTCAACTGGAATTAG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCTACCTACCTTATCTTaGTTTCCAATATGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGLPTLS*FPIWLW
Trigger: CCAGAGCCATATTGGAAAGCAAGATAAGGTAGGTAG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTTTTTGCTGTTTATCCTaGGGAGAAACTGCAGTGAGC +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSFCCLS*GETAVS
Trigger: GCTCACTGCAGTTTCTCCGCAGGATAAACAGCAAAA...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATACAGTTCTTTAGTGCTTaGTACAGCAATGCCAAGCAC +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIQFFSA*YSNAKH
Trigger: GTGCTTGGCATTGCTGTACCAAGCACTAAAGAACTG...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAGGTCTGGACACTTTCTaGATCCTCCAGATTCTTTCA +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAGLDTF*ILQILS
Trigger: TGAAAGAATCTGGAGGATCCAGAAAGTGTCCAGACC...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 90 bp CAACACCAAACAATTATTGATCAAATTTGCTTGGTTGTGGTGACTTaGTTAGTCTCACTGTTGTCTTCACTTGGCCCTGCAAGCTCACCT +
Preference number: 2 (lower is better)
Translates to: QHQTIIDQICLVVVT*LVSLLSSLGPASSP
Trigger: AGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAAAGTCACCACAACCAAGCAAATTTGATCAATAATTGTTTGGTGTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAGTATTTCCTGATGAATaGTGCAGCAAGCTAAACTGC +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIVFPDE*CSKLNC
Trigger: GCAGTTTAGCTTGCTGCATCATTCATCAGGAAATAC...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGGCATTGTCTAAAAGATaGTATTTCTCCATGCTTCCC +
Preference number: 2 (lower is better)
Translates to: KESVPASATDQINSERQGALSKR*YFSMLP
Trigger: GGGAAGCATGGAGAAATATCATCTTTTAGACAATGC...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATATTCCAGTTGACTGCATaGTCTCCTGTATTTCCTGAT +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIFQLTA*SPVFPD
Trigger: ATCAGGAAATACAGGAGAGCATGCAGTCAACTGGAA...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTCTAATTCCAGTTGACTaGATGCTCTCCTGTATTTCC +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSLIPVD*MLSCIS
Trigger: GGAAATACAGGAGAGCATGCAGTCAACTGGAATTAG...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTCTGCTACATAGCAAGTaGTTTGTAAATAGAGGAGTT +
Preference number: 2 (lower is better)
Translates to: TKANGNLMGEACYSSIWGLLHSK*FVNRGV
Trigger: AACTCCTCTATTTACAAAGCACTTGCTATGTAGCAG...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTCTACCTACCTTATCTTaGTTTCCAATATGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSLPTLS*FPIWLW
Trigger: CCAGAGCCATATTGGAAAGCAAGATAAGGTAGGTAG...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 90 bp CTCACCTCAGATAAGGGCCATCTTCCCACCTCTACCTACCTTATCTaGCTTTCCAATATGGCTCTGGAGAAAAATGAAATACTAATTTCT +
Preference number: 2 (lower is better)
Translates to: LTSDKGHLPTSTYLI*LSNMALEKNEILIS
Trigger: AGAAATTAGTATTTCATTTTTCTCCAGAGCCATATTGGAAAGCAAGATAAGGTAGGTAGAGGTGGGAAGATGGCCCTTATCTGAGGTGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTAATTCTAATTCCAGTTaGCTGCATGCTCTCCTGTAT +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSNSNSS*LHALLY
Trigger: ATACAGGAGAGCATGCAGTCAACTGGAATTAGAATT...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAAATTCTAATTCCAGTTaGCTGCATGCTCTCCTGTAT +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDINSNSS*LHALLY
Trigger: ATACAGGAGAGCATGCAGTCAACTGGAATTAGAATT...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR TCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAGCATTGTCTAAAAGATaGTATTTCTCCATGCTTCCC +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIALSKR*YFSMLP
Trigger: GGGAAGCATGGAGAAATATCATCTTTTAGACAATGC...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAATAAAGGATGCTTCCTaGCATTCCTCTTCTTCACTT +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIIKDAS*HSSSSL
Trigger: AAGTGAAGAAGAGGAATGCCAGGAAGCATCCTTTAT...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAATTAGCTTCTCTCCCTaGTCATCTCCACTTTATAAG +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDIISFSP*SSPLYK
Trigger: CTTATAAAGTGGAGATGACCAGGGAGAGAAGCTAAT...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAACAGGGATTTTGGAATaGGAAGGTAGTAAGAATCCA +
Preference number: 2 (lower is better)
Translates to: VSELFTHLCASEALSPDITGILE*EGSKNP
Trigger: TGGATTCTTACTACCTTCCCATTCCAAAATCCCTGT...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAACAGGGATTTTGGAATaGGAAGGTAGTAAGAATCCA +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETATGILE*EGSKNP
Trigger: TGGATTCTTACTACCTTCCCATTCCAAAATCCCTGT...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR GCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAAATCCACTTTCCACCTaGCTAGAAATCTTGAACAAA +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETANPLST*LEILNK
Trigger: TTTGTTCAAGATTTCTAGGCAGGTGGAAAGTGGATT...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCATCTTGCTTTCCAATATaGCTCTGGAGAAAAATGAAA +
Preference number: 2 (lower is better)
Translates to: HSQQSLFEFCCLSCGETASCFPI*LWRKMK
Trigger: TTTCATTTTTCTCCAGAGCCATATTGGAAAGCAAGA...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTTCTTGCTTTCCAATATaGCTCTGGAGAAAAATGAAA +
Preference number: 2 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSSCFPI*LWRKMK
Trigger: TTTCATTTTTCTCCAGAGCCATATTGGAAAGCAAGA...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp TCCCCTCAAGGCCCTCAGCACTGCAGTCCCCTTGTCTaGAGCTCAACAGGCTGCACCAGGGTGGCCTTAGGG +
Preference number: 3 (lower is better)
Translates to: SPQGPQHCSPLV*SSTGCTRVALG
Trigger: CCCTAAGGCCACCCTGGTGCAGCCTGTTGAGCTGCAGACAAGGGGACTGCAGTGCTGAGGGCCTTGAGGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp CCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTaGTGCTTGCCCAGGCTGTGCCAACTGGGGTCTACT +
Preference number: 3 (lower is better)
Translates to: PEALELSGPPMS*CLPRLCQLGST
Trigger: AGTAGACCCCAGTTGGCACAGCCTGGGCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGCACTGTTGTCTTCACTaGGCCCTGCAAGCTCACCTC +
Preference number: 3 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQHCCLH*ALQAHL
Trigger: GAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGTG...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATAGCACTGCAGTCCCCTaGTCTGCAGCTCAACAGGCT +
Preference number: 3 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDSTAVP*SAAQQA
Trigger: AGCCTGTTGAGCTGCAGACAAGGGGACTGCAGTGCT...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGTTCAAACCTGAGGCCTaGGAGTTATCAGGGCCTCCA +
Preference number: 3 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQFKPEA*ELSGPP
Trigger: TGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAA...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp CCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTaGCCAGGCTGTGCCAACTGGGGTCTACTAAGTGAT +
Preference number: 3 (lower is better)
Translates to: PWSYQGLQCPAA*PGCANWGLLSD
Trigger: ATCACTTAGTAGACCCCAGTTGGCACAGCCTGGGCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGTTGTTAGTCTCACTGTaGTCTTCACTTGGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQLLVSL*SSLGPA
Trigger: TGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAA...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCATTTGATGGGGGAGGCTaGTTATTCCAGTATTTGGGG +
Preference number: 3 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAFDGGG*LFQYLG
Trigger: CCCCAAATACTGGAATAACAAGCCTCCCCCATCAAA...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR TCA 72 bp TTTTGCTGTTTATCCTGCGGAGAAACTGCAGTGAGCTaGTGGGAAGCTTTGGTGAACAGCCCTCCATGGCCC +
Preference number: 3 (lower is better)
Translates to: FCCLSCGETAVS*WEALVNSPPWP
Trigger: GGGCCATGGAGGGCTGTTCACCAAAGCTTCCCATCAGCTCACTGCAGTTTCTCCGCAGGATAAACAGCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR TCA 72 bp GACGCACAGCCTGGCCTATCTCTTGGTTTAGTCTGCTaGGTTTTACTCTTGGACCAGGGAAGGAGTTCAGGC +
Preference number: 3 (lower is better)
Translates to: DAQPGLSLGLVC*VLLLDQGRSSG
Trigger: GCCTGAACTCCTTCCCTGGTCCAAGAGTAAAACTCAGCAGACTAAACCAAGAGATAGGCCAGGCTGTGCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CCA 72 bp TGCAGTGTCTTGAGGATGCGGGGTCTGGACACTTTCTaGATCCTCCAGATTCTTTCAAACCTGAGGCCTTGG +
Preference number: 3 (lower is better)
Translates to: CSVLRMRGLDTF*ILQILSNLRPW
Trigger: CCAAGGCCTCAGGTTTGAAAGAATCTGGAGGATCCAGAAAGTGTCCAGACCCCGCATCCTCAAGACACTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAAAGGCAAATGGCAATTaGATGGGGGAGGCTTGTTAT +
Preference number: 3 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAKANGN*MGEACY
Trigger: ATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTT...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATTTGTTAGTCTCACTGTaGTCTTCACTTGGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDLLVSL*SSLGPA
Trigger: TGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAA...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAATTCCTCTTCTTCACTaGCTCTCCTGCTCATTAGAA +
Preference number: 3 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAIPLLH*LSCSLE
Trigger: TTCTAATGAGCAGGAGAGCAAGTGAAGAAGAGGAAT...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCTTGTTAGTCTCACTGTaGTCTTCACTTGGCCCTGCA +
Preference number: 3 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACLLVSL*SSLGPA
Trigger: TGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAA...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp GACTTTGTTAGTCTCACTGTTGTCTTCACTTGGCCCTaGAAGCTCACCTCAGATAAGGGCCATCTTCCCACC +
Preference number: 3 (lower is better)
Translates to: DFVSLTVVFTWP*KLTSDKGHLPT
Trigger: GGTGGGAAGATGGCCCTTATCTGAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATATTCCTCTTCTTCACTaGCTCTCCTGCTCATTAGAA +
Preference number: 3 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDIPLLH*LSCSLE
Trigger: TTCTAATGAGCAGGAGAGCAAGTGAAGAAGAGGAAT...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCAAGGCAAATGGCAATTaGATGGGGGAGGCTTGTTAT +
Preference number: 3 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACKANGN*MGEACY
Trigger: ATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTT...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATTCTACCTACCTTATCTaGCTTTCCAATATGGCTCTG +
Preference number: 3 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDSTYLI*LSNMAL
Trigger: CAGAGCCATATTGGAAAGCAAGATAAGGTAGGTAGA...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGAGCACTGCAGTCCCCTaGTCTGCAGCTCAACAGGCT +
Preference number: 3 (lower is better)
Translates to: KESVPASATDQINSERQGSTAVP*SAAQQA
Trigger: AGCCTGTTGAGCTGCAGACAAGGGGACTGCAGTGCT...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCACTGCAGTGCAGTGTCTaGAGGATGCGGGGTCTGGAC +
Preference number: 3 (lower is better)
Translates to: HSQQSLFEFCCLSCGETALQCSV*RMRGLD
Trigger: GTCCAGACCCCGCATCCTCAAGACACTGCACTGCAG...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR TCA 72 bp TGGACACTTTCTGGATCCTCCAGATTCTTTCAAACCTaGGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTG +
Preference number: 3 (lower is better)
Translates to: WTLSGSSRFFQT*GLGVIRASNVL
Trigger: CAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAGAATCTGGAGGATCCAGAAAGTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CCA 72 bp GCAGTATTTCAGAGACGCACAGCCTGGCCTATCTCTTaGTTTAGTCTGCTGAGTTTTACTCTTGGACCAGGG +
Preference number: 3 (lower is better)
Translates to: AVFQRRTAWPIS*FSLLSFTLGPG
Trigger: CCCTGGTCCAAGAGTAAAACTCAGCAGACTAAACCAAGAGATAGGCCAGGCTGTGCGTCTCTGAAATACTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCACCACACCAGTTTTCTTaGATTTTGAAACTTAGCAAC +
Preference number: 3 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAPHQFS*ILKLSN
Trigger: GTTGCTAAGTTTCAAAATCAAAGAAAACTGGTGTGG...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTAGCACTGCAGTCCCCTaGTCTGCAGCTCAACAGGCT +
Preference number: 3 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSSTAVP*SAAQQA
Trigger: AGCCTGTTGAGCTGCAGACAAGGGGACTGCAGTGCT...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR TCA 72 bp AGGATGCACAAGCATGAGGCAGGATGCTCTTCCCTCTaGCACACACCTTTAACTAGGGCTCTTACCATTAAG +
Preference number: 3 (lower is better)
Translates to: RMHKHEAGCSSL*HTPLTRALTIK
Trigger: CTTAATGGTAAGAGCCCTAGTTAAAGGTGTGTGTCAGAGGGAAGAGCATCCTGCCTCATGCTTGTGCATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CCA 72 bp TGTGGTGACTTTGTTAGTCTCACTGTTGTCTTCACTTaGCCCTGCAAGCTCACCTCAGATAAGGGCCATCTT +
Preference number: 3 (lower is better)
Translates to: CGDFVSLTVVFT*PCKLTSDKGHL
Trigger: AAGATGGCCCTTATCTGAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAAAGTCACCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGTTCAAACCTGAGGCCTaGGAGTTATCAGGGCCTCCA +
Preference number: 3 (lower is better)
Translates to: KESVPASATDQINSERQGFKPEA*ELSGPP
Trigger: TGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAA...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR TCA 72 bp CATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATATaGTGGCGTCATTTGAGAGCCCGTTTGCTAGAGATT +
Preference number: 3 (lower is better)
Translates to: HLCASEALSPDI*WRHLRARLLEI
Trigger: AATCTCTAGCAAACGGGCTCTCAAATGACGCCATCATATGTCTGGAGACAAAGCCTCACTAGCACACAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp GTATTTGGGGTGCTGATGCAACTCAAGATCAACTTGTaGAACTTCCAGGTCAGCCTATGCTACAAAGCAAAC +
Preference number: 3 (lower is better)
Translates to: VFGVLMQLKINL*NFQVSLCYKAN
Trigger: GTTTGCTTTGTAGCATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CCA 72 bp GGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTaGGGTGCTGATGCAACTCAAGATCAACTTGTGCAA +
Preference number: 3 (lower is better)
Translates to: GNLMGEACYSSI*GADATQDQLVQ
Trigger: TTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATATTTGATGGGGGAGGCTaGTTATTCCAGTATTTGGGG +
Preference number: 3 (lower is better)
Translates to: VSELFTHLCASEALSPDIFDGGG*LFQYLG
Trigger: CCCCAAATACTGGAATAACAAGCCTCCCCCATCAAA...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp TCCTGCTCATTAGAACAGCCTCTGCTACATAGCAAGTaGTTTGTAAATAGAGGAGTTGGTGATCAAGGAAGT +
Preference number: 3 (lower is better)
Translates to: SCSLEQPLLHSK*FVNRGVGDQGS
Trigger: ACTTCCTTGATCACCAACTCCTCTATTTACAAAGCACTTGCTATGTAGCAGAGGCTGTTCTAATGAGCAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp TCATCTCCACTTTATAAGAGACCTTCAGATAAAGGATaGTTCCTGGCATTCCTCTTCTTCACTTGCTCTCCT +
Preference number: 3 (lower is better)
Translates to: SSPLYKRPSDKG*FLAFLFFTCSP
Trigger: AGGAGAGCAAGTGAAGAAGAGGAATGCCAGGAAGCATCCTTTATCTGAAGGTCTCTTATAAAGTGGAGATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR GCA 72 bp CTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATaGTACAAAGCAAACATTGTGTTTCCCACCTCTAAT +
Preference number: 3 (lower is better)
Translates to: LKINLCNFQVSL*YKANIVFPTSN
Trigger: ATTAGAGGTGGGAAACACAATGTTTGCTTTGTAGCATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTATTCCTCTTCTTCACTaGCTCTCCTGCTCATTAGAA +
Preference number: 3 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSIPLLH*LSCSLE
Trigger: TTCTAATGAGCAGGAGAGCAAGTGAAGAAGAGGAAT...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCATCTACCTACCTTATCTaGCTTTCCAATATGGCTCTG +
Preference number: 3 (lower is better)
Translates to: HSQQSLFEFCCLSCGETASTYLI*LSNMAL
Trigger: CAGAGCCATATTGGAAAGCAAGATAAGGTAGGTAGA...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCTCAGCAAAGTCTATTaGAGTTTTGCTGTTTATCCT +
Preference number: 3 (lower is better)
Translates to: KESVPASATDQINSERQGLSKVY*SFAVYP
Trigger: AGGATAAACAGCAAAACTCAAATAGACTTTGCTGAG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR-3UTR CAA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCACCACACCAGTTTTCTTaGATTTTGAAACTTAGCAAC +
Preference number: 3 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAPHQFS*ILKLSN
Trigger: GTTGCTAAGTTTCAAAATCAAAGAAAACTGGTGTGG...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR TCA 72 bp AGAATAGCTATACAATGTAATTCCTACACTTCTCAGTaGCCATGCAAGACATTAAGAACATGGACATCTCTG +
Preference number: 3 (lower is better)
Translates to: RIAIQCNSYTSQ*PCKTLRTWTSL
Trigger: CAGAGATGTCCATGTTCTTAATGTCTTGCATGGTCACTGAGAAGTGTAGGAATTACATTGTATAGCTATTCT
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACAGGTGGTGCAGATaGAGAGGCCACGGGCAACCC +
Preference number: 4 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDDRWCR*RGHGQP
Trigger: GGGTTGCCCGTGGCCTCTCCATCTGCACCACCTGTC...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCACAGGGCTTAGCATCATaGACATTCCCAGTGATCAGG +
Preference number: 4 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAQGLAS*TFPVIR
Trigger: CCTGATCACTGGGAATGTCCATGATGCTAAGCCCTG...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTGACAGGTGGTGCAGATaGAGAGGCCACGGGCAACCC +
Preference number: 4 (lower is better)
Translates to: TKANGNLMGEACYSSIWGDRWCR*RGHGQP
Trigger: GGGTTGCCCGTGGCCTCTCCATCTGCACCACCTGTC...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATCAGCCCATGAGACCCTaGAAAATGACATCACGGAGA +
Preference number: 4 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDQPMRP*KMTSRR
Trigger: TCTCCGTGATGTCATTTTCCAGGGTCTCATGGGCTG...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR TCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCATGCTGTCTGTGGTTTaGGCTTTCTCCACAGTGTGG +
Preference number: 4 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACMLSVV*AFSTVW
Trigger: CCACACTGTGGAGAAAGCTCAAACCACAGACAGCAT...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR GCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAGGCAATAACATGCCATaGTGTCTGTGGTTTGAGCTT +
Preference number: 4 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAGNNMP*CLWFEL
Trigger: AAGCTCAAACCACAGACAGCATGGCATGTTATTGCC...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATATGCCATGCTGTCTGTaGTTTGAGCTTTCTCCACAG +
Preference number: 4 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDMPCCL*FELSPQ
Trigger: CTGTGGAGAAAGCTCAAACCACAGACAGCATGGCAT...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGAATTGTTTGCAGACCTaGAGCTGTAAAGATAGAGGA +
Preference number: 4 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQNCLQT*SCKDRG
Trigger: TCCTCTATCTTTACAGCTCCAGGTCTGCAAACAATT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR TCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAAAGCTAGGAAAAACCTaGGAAACACAAGGAAGTAAG +
Preference number: 4 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAKLGKT*ETQGSK
Trigger: CTTACTTCCTTGTGTTTCTCAGGTTTTTCCTAGCTT...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR GCA 90 bp CTTTCAAACCTGAGGCCTTGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTGCGGCAATAACATGCCATaGTGTCTGTGGTTTGAGCTT +
Preference number: 4 (lower is better)
Translates to: LSNLRPWSYQGLQCPAACGNNMP*CLWFEL
Trigger: AAGCTCAAACCACAGACAGCATGGCATGTTATTGCC...GCAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGACCTGCTTTTATTCTTaGACCTTCTGTTCTTTGTTC +
Preference number: 4 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQTCFYS*TFCSLF
Trigger: GAACAAAGAACAGAAGGTCCAAGAATAAAAGCAGGT...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 72 bp TTTCTGGATCCTCCAGATTCTTTCAAACCTGAGGCCTaGGAGTTATCAGGGCCTCCAATGTCCTGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: FLDPPDSFKPEA*ELSGPPMSCCL
Trigger: CAAGCAGCAGGACATTGGAGGCCCTGATAACTCCAAGGCCTCAGGTTTGAAAGAATCTGGAGGATCCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCAACCTGCTTTTATTCTTaGACCTTCTGTTCTTTGTTC +
Preference number: 4 (lower is better)
Translates to: GGALTQLRAVRSLPGMTATCFYS*TFCSLF
Trigger: GAACAAAGAACAGAAGGTCCAAGAATAAAAGCAGGT...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GGGTCCCCTCCAGGCACAGCTCAGCTGCAGATAGCAATTCGACCTCACTCTCAGTCCAAATTATCTTCATaGCTAAAGCTAGGAAAAACC +
Preference number: 4 (lower is better)
Translates to: GSPPGTAQLQIAIRPHSQSKLSS*LKLGKT
Trigger: GGTTTTTCCTAGCTTTAGCCATGAAGATAATTTGGA...CTGAGAGTGAGGTCGAATTGCTATCTGCAGCTGAGCTGTGCCTGGAGGGGACCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGATGCCATGCTGTCTGTaGTTTGAGCTTTCTCCACAG +
Preference number: 4 (lower is better)
Translates to: WGADATQDQLVQLPGQPMMPCCL*FELSPQ
Trigger: CTGTGGAGAAAGCTCAAACCACAGACAGCATGGCAT...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR TCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGCATCACGGAGAGTCATaGGAGAGAGGAACAGCCACT +
Preference number: 4 (lower is better)
Translates to: KESVPASATDQINSERQGHHGES*ERGTAT
Trigger: AGTGGCTGTTCCTCTCTCTCATGACTCTCCGTGATG...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR GCA 90 bp CCCTTTAGGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATTTGCTTACAGATACCTaGTTTTATTCTTGGACCTTC +
Preference number: 4 (lower is better)
Translates to: PFRRGTHTTKSSQKPPWDLLTDT*FYSWTF
Trigger: GAAGGTCCAAGAATAAAAGCAGGTATCTGTAAGCAA...ATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCCTAAAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR TCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCACATCACGGAGAGTCATaGGAGAGAGGAACAGCCACT +
Preference number: 4 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAHHGES*ERGTAT
Trigger: AGTGGCTGTTCCTCTCTCTCATGACTCTCCGTGATG...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR TCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAATGCTGTCTGTGGTTTaGGCTTTCTCCACAGTGTGG +
Preference number: 4 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAMLSVV*AFSTVW
Trigger: CCACACTGTGGAGAAAGCTCAAACCACAGACAGCAT...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCACAGCCCATGAGACCCTaGAAAATGACATCACGGAGA +
Preference number: 4 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAQPMRP*KMTSRR
Trigger: TCTCCGTGATGTCATTTTCCAGGGTCTCATGGGCTG...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATACAGCCCATGAGACCCTaGAAAATGACATCACGGAGA +
Preference number: 4 (lower is better)
Translates to: VSELFTHLCASEALSPDIQPMRP*KMTSRR
Trigger: TCTCCGTGATGTCATTTTCCAGGGTCTCATGGGCTG...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGAATTGTTTGCAGACCTaGAGCTGTAAAGATAGAGGA +
Preference number: 4 (lower is better)
Translates to: WGADATQDQLVQLPGQPMNCLQT*SCKDRG
Trigger: TCCTCTATCTTTACAGCTCCAGGTCTGCAAACAATT...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATACAGGGCTTAGCATCATaGACATTCCCAGTGATCAGG +
Preference number: 4 (lower is better)
Translates to: VSELFTHLCASEALSPDIQGLAS*TFPVIR
Trigger: CCTGATCACTGGGAATGTCCATGATGCTAAGCCCTG...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTCAGGGCTTAGCATCATaGACATTCCCAGTGATCAGG +
Preference number: 4 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSQGLAS*TFPVIR
Trigger: CCTGATCACTGGGAATGTCCATGATGCTAAGCCCTG...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 72 bp ATTTGCTTGGTTGTGGTGACTTTGTTAGTCTCACTGTaGTCTTCACTTGGCCCTGCAAGCTCACCTCAGATA +
Preference number: 4 (lower is better)
Translates to: ICLVVVTLLVSL*SSLGPASSPQI
Trigger: TATCTGAGGTGAGCTTGCAGGGCCAAGTGAAGACAACAGTGAGACTAACAAAGTCACCACAACCAAGCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 72 bp TGCCTCAGTAGTCCCAATGGTTCTTCAGAAAACCCTTaGCTCTTAGCAAAAGAATCAGTCCCAGCATCAGCA +
Preference number: 4 (lower is better)
Translates to: CLSSPNGSSENP*LLAKESVPASA
Trigger: TGCTGATGCTGGGACTGATTCTTTTGCTAAGAGCAAAGGGTTTTCTGAAGAACCATTGGGACTACTGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR GCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGTTGCTTACAGATACCTaGTTTTATTCTTGGACCTTC +
Preference number: 4 (lower is better)
Translates to: WGADATQDQLVQLPGQPMLLTDT*FYSWTF
Trigger: GAAGGTCCAAGAATAAAAGCAGGTATCTGTAAGCAA...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR GCA 90 bp AAAGAATCAGTCCCAGCATCAGCAACAGATCAAATCAATTCAGAGAGACAGGGGGGCAATAACATGCCATaGTGTCTGTGGTTTGAGCTT +
Preference number: 4 (lower is better)
Translates to: KESVPASATDQINSERQGGNNMP*CLWFEL
Trigger: AAGCTCAAACCACAGACAGCATGGCATGTTATTGCC...CCCCTGTCTCTCTGAATTGATTTGATCTGTTGCTGATGCTGGGACTGATTCTTT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGACCTGCTTTTATTCTTaGACCTTCTGTTCTTTGTTC +
Preference number: 4 (lower is better)
Translates to: WGADATQDQLVQLPGQPMTCFYS*TFCSLF
Trigger: GAACAAAGAACAGAAGGTCCAAGAATAAAAGCAGGT...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTGGTAGCTCTGATTTCTaGCCTAGAATTGTTTGCAGA +
Preference number: 4 (lower is better)
Translates to: TKANGNLMGEACYSSIWGGSSDF*PRIVCR
Trigger: TCTGCAAACAATTCTAGGCCAGAAATCAGAGCTACC...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR TCA 90 bp ACCAAGGCAAATGGCAATTTGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGTAAGCTAGGAAAAACCTaGGAAACACAAGGAAGTAAG +
Preference number: 4 (lower is better)
Translates to: TKANGNLMGEACYSSIWGKLGKT*ETQGSK
Trigger: CTTACTTCCTTGTGTTTCTCAGGTTTTTCCTAGCTT...ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 72 bp TGGGGCACAATGCTCCTGAGGTGTTTTTATACATCATaGTGTACTGGAGTGAAGGTCTTAAGTAGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: WGTMLLRCFYTS*CTGVKVLSRAC
Trigger: ACAAGCTCTACTTAAGACCTTCACTCCAGTACACAATGATGTATAAAAACACCTCAGGAGCATTGTGCCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 72 bp GTTGCAATGCATTGTAATACCAAGGCAAATGGCAATTaGATGGGGGAGGCTTGTTATTCCAGTATTTGGGGT +
Preference number: 4 (lower is better)
Translates to: VAMHCNTKANGN*MGEACYSSIWG
Trigger: ACCCCAAATACTGGAATAACAAGCCTCCCCCATCAAATTGCCATTTGCCTTGGTATTACAATGCATTGCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAGGTAGCTCTGATTTCTaGCCTAGAATTGTTTGCAGA +
Preference number: 4 (lower is better)
Translates to: HSQQSLFEFCCLSCGETAGSSDF*PRIVCR
Trigger: TCTGCAAACAATTCTAGGCCAGAAATCAGAGCTACC...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp GAGATATTCTCGGTGTACTGGTTCATGTCTTTAACCCCAGAAATCTCTGTGAGTGGTAGCTCTGATTTCTaGCCTAGAATTGTTTGCAGA +
Preference number: 4 (lower is better)
Translates to: EIFSVYWFMSLTPEISVSGSSDF*PRIVCR
Trigger: TCTGCAAACAATTCTAGGCCAGAAATCAGAGCTACC...ACTCACAGAGATTTCTGGGGTTAAAGACATGAACCAGTACACCGAGAATATCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 72 bp GATAAGGGCCATCTTCCCACCTCTACCTACCTTATCTaGCTTTCCAATATGGCTCTGGAGAAAAATGAAATA +
Preference number: 4 (lower is better)
Translates to: DKGHLPTSTYLI*LSNMALEKNEI
Trigger: TATTTCATTTTTCTCCAGAGCCATATTGGAAAGCAAGATAAGGTAGGTAGAGGTGGGAAGATGGCCCTTATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR TCA 90 bp GTCAGTGAGTTATTTACTCATCTGTGTGCTAGTGAGGCTTTGTCTCCAGACATAAAGCTAGGAAAAACCTaGGAAACACAAGGAAGTAAG +
Preference number: 4 (lower is better)
Translates to: VSELFTHLCASEALSPDIKLGKT*ETQGSK
Trigger: CTTACTTCCTTGTGTTTCTCAGGTTTTTCCTAGCTT...TATGTCTGGAGACAAAGCCTCACTAGCACACAGATGAGTAAATAACTCACTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCAAATTGTTTGCAGACCTaGAGCTGTAAAGATAGAGGA +
Preference number: 4 (lower is better)
Translates to: HSQQSLFEFCCLSCGETANCLQT*SCKDRG
Trigger: TCCTCTATCTTTACAGCTCCAGGTCTGCAAACAATT...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CCA 90 bp CACTCTCAGCAAAGTCTATTTGAGTTTTGCTGTTTATCCTGCGGAGAAACTGCATCCAAATTATCTTCATaGCTAAAGCTAGGAAAAACC +
Preference number: 4 (lower is better)
Translates to: HSQQSLFEFCCLSCGETASKLSS*LKLGKT
Trigger: GGTTTTTCCTAGCTTTAGCCATGAAGATAATTTGGA...TGCAGTTTCTCCGCAGGATAAACAGCAAAACTCAAATAGACTTTGCTGAGAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
3UTR CAA 72 bp ATTTCCCCACAGCATCCACACCAGTTTTCTTTGATTTaGAAACTTAGCAACACCAAACAATTATTGATCAAA +
Preference number: 4 (lower is better)
Translates to: ISPQHPHQFSLI*KLSNTKQLLIK
Trigger: TTTGATCAATAATTGTTTGGTGTTGCTAAGTTTCAAAATCAAAGAAAACTGGTGTGGATGCTGTGGGGAAAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CAA 90 bp GGAGGGGCACTCACACAACTAAGAGCAGTCAGAAGCCTCCCTGGGATGACTGCACATGCTGTCTGTGGTTaGAGCTTTCTCCACAGTGTG +
Preference number: 5 (lower is better)
Translates to: GGALTQLRAVRSLPGMTAHAVCG*SFLHSV
Trigger: CACACTGTGGAGAAAGCTCAAACCACAGACAGCATG...TGCAGTCATCCCAGGGAGGCTTCTGACTGCTCTTAGTTGTGTGAGTGCCCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS-3UTR CAA 90 bp TGGGGTGCTGATGCAACTCAAGATCAACTTGTGCAACTTCCAGGTCAGCCTATGCATGCTGTCTGTGGTTaGAGCTTTCTCCACAGTGTG +
Preference number: 5 (lower is better)
Translates to: WGADATQDQLVQLPGQPMHAVCG*SFLHSV
Trigger: CACACTGTGGAGAAAGCTCAAACCACAGACAGCATG...CATAGGCTGACCTGGAAGTTGCACAAGTTGATCTTGAGTTGCATCAGCACCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS CCA 72 bp GAGGAGGAGAAAGGCAATAACATGCCATGCTGTCTGTaGTTTGAGCTTTCTCCACAGTGTGGTCCTGGGACT +
Preference number: 6 (lower is better)
Translates to: EEEKGNNMPCCL*FELSPQCGPGT
Trigger: AGTCCCAGGACCACACTGTGGAGAAAGCTCAAACCACAGACAGCATGGCATGTTATTGCCTTTCTCCTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000091719.2
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS GCA 72 bp CCTCTGGGTAGCTCTGATTTCTGGCCTAGAATTGTTTaGAGACCTGGAGCTGTAAAGATAGAGGACACGCTT +
Preference number: 6 (lower is better)
Translates to: PLGSSDFWPRIV*RPGAVKIEDTL
Trigger: AAGCGTGTCCTCTATCTTTACAGCTCCAGGTCTGCAAACAATTCTAGGCCAGAAATCAGAGCTACCCAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000091719.2
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2
CDS TCA 72 bp TCCAAATTATCTTCATGGCTAAAGCTAGGAAAAACCTaGGAAACACAAGGAAGTAAGCATGATCTAGTTCAT +
Preference number: 6 (lower is better)
Translates to: SKLSSWLKLGKT*ETQGSKHDLVH
Trigger: ATGAACTAGATCATGCTTACTTCCTTGTGTTTCTCAGGTTTTTCCTAGCTTTAGCCATGAAGATAATTTGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000091719.2
ENSMUST00000235331.2
ENSMUST00000236495.2
ENSMUST00000238002.2