Pregenerated sensors for VMN1R222 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061022Ensembl transcript IDs: ENSMUST00000077116.5, ENSMUST00000226672.3, ENSMUST00000235574.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCCTTAAAATGAATGTAGACTCAGGTCCTTTTGCAGCTCTCTGGTaGTACAGAGCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAAC | + |
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Preference number: 1 (lower is better) Translates to: FLKMNVDSGPFAALW*YRAGWLCGEHPGIN Trigger: GTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGCTCTGTATCACCAGAGAGCTGCAAAAGGACCTGAGTCTACATTCATTTTAAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR TCA 90 bp | AACCTAGAAACCTCAGACATATTAACTGAAACATTACTGTGTGCTTaGTGTTCACTTTCTGCTGTATCTCCAGTCTATTCCCGCAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: NLETSDILTETLLCA*CSLSAVSPVYSRRE Trigger: CTCTCTGCGGGAATAGACTGGAGATACAGCAGAAAGTGAACATCAAGCACACAGTAATGTTTCAGTTAATATGTCTGAGGTTTCTAGGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR TCA 90 bp | GTTTCTGGGTGTTTAGGTTCTGTGACTGGTGCATTGGGCTTCTGCTaGCTAACTACATACTACACATCATTCTTTCATAATTCTAAGAAG | + |
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Preference number: 1 (lower is better) Translates to: VSGCLGSVTGALGFC*LTTYYTSFFHNSKK Trigger: CTTCTTAGAATTATGAAAGAATGATGTGTAGTATGTAGTTAGTCAGCAGAAGCCCAATGCACCAGTCACAGAACCTAAACACCCAGAAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR GCA 90 bp | TGGATTCTTACAGACACTTTGAATAATCACAAAGTATCCTCGGAGTaGTATCATTTTGCAAGGACAAATAAGCAATTCTTGGAATACCAT | + |
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Preference number: 1 (lower is better) Translates to: WILTDTLNNHKVSSE*YHFARTNKQFLEYH Trigger: ATGGTATTCCAAGAATTGCTTATTTGTCCTTGCAAAATGATAGCACTCCGAGGATACTTTGTGATTATTCAAAGTGTCTGTAAGAATCCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAGTCACACTCGTTGACTaGCCTTGGAAAAAGAAAACC | + |
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Preference number: 2 (lower is better) Translates to: AGWLCGEHPGINKGQLQTVTLVD*PWKKKT Trigger: GGTTTTCTTTTTCCAAGGTCAGTCAACGAGTGTGAC...TGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR TCA 90 bp | GAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAAGCCTTGGTCTGCTTCAGGCATTGGGCTTCTGCTaGCTAACTACATACTACACA | + |
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Preference number: 2 (lower is better) Translates to: EHPGINKGQLQTSLGLLQALGFC*LTTYYT Trigger: TGTGTAGTATGTAGTTAGTCAGCAGAAGCCCAATGC...CTGAAGCAGACCAAGGCTTGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAAAAGTATCCTCGGAGTaGTATCATTTTGCAAGGACA | + |
|
Preference number: 2 (lower is better) Translates to: AGWLCGEHPGINKGQLQTKVSSE*YHFART Trigger: TGTCCTTGCAAAATGATAGCACTCCGAGGATACTTT...TGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR CAA 90 bp | AAAGGGCAGCTGCAAACAAGCCTTGGTCTGCTTCAGTCACACTCGTaGACTGACCTTGGAAAAAGAAAACCTAGAAACCTCAGACATATT | + |
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Preference number: 2 (lower is better) Translates to: KGQLQTSLGLLQSHS*TDLGKRKPRNLRHI Trigger: AATATGTCTGAGGTTTCTAGGTTTTCTTTTTCCAAGGTCAGTCAACGAGTGTGACTGAAGCAGACCAAGGCTTGTTTGCAGCTGCCCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR CCA 90 bp | TCTATTCCCGCAGAGAGCACTCGTGAATATAACACCATTGAAATGTTTCTGGGTTTTAGGTTCTGTGACTaGTGCATTGGGCTTCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: SIPAESTREYNTIEMFLGFRFCD*CIGLLL Trigger: CAGCAGAAGCCCAATGCACCAGTCACAGAACCTAAA...ACCCAGAAACATTTCAATGGTGTTATATTCACGAGTGCTCTCTGCGGGAATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR TCA 90 bp | AAACATTACTGTGTGCTTGATGTTCACTTTCTGCTGTATCTCCAGTCTATTCCCGCATTGGGCTTCTGCTaGCTAACTACATACTACACA | + |
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Preference number: 2 (lower is better) Translates to: KHYCVLDVHFLLYLQSIPALGFC*LTTYYT Trigger: TGTGTAGTATGTAGTTAGTCAGCAGAAGCCCAATGC...GGGAATAGACTGGAGATACAGCAGAAAGTGAACATCAAGCACACAGTAATGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCCCGCAGAGAGCACTCGTGAATATAACACCATTGAAATGTTTCTGGGTGTTAAAGTATCCTCGGAGTaGTATCATTTTGCAAGGACA | + |
|
Preference number: 2 (lower is better) Translates to: IPAESTREYNTIEMFLGVKVSSE*YHFART Trigger: TGTCCTTGCAAAATGATAGCACTCCGAGGATACTTT...AACACCCAGAAACATTTCAATGGTGTTATATTCACGAGTGCTCTCTGCGGGAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR GCA 90 bp | TGCTATCATTTTGCAAGGACAAATAAGCAATTCTTGGAATACCATGATCAAACCTCCAAGCCTCAGGCATaGAGGCATACATATGTTACA | + |
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Preference number: 2 (lower is better) Translates to: CYHFARTNKQFLEYHDQTSKPQA*RHTYVT Trigger: TGTAACATATGTATGCCTGCATGCCTGAGGCTTGGA...GGTTTGATCATGGTATTCCAAGAATTGCTTATTTGTCCTTGCAAAATGATAGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR GCA 90 bp | TGCTATCATTTTGCAAGGACAAATAAGCAATTCTTGGAATACCATGATCAAACCTTTACCAAATCCATTTaGATGCTTCCAGTCATGGTA | + |
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Preference number: 2 (lower is better) Translates to: CYHFARTNKQFLEYHDQTFTKSI*MLPVMV Trigger: TACCATGACTGGAAGCATGCAAATGGATTTGGTAAA...GGTTTGATCATGGTATTCCAAGAATTGCTTATTTGTCCTTGCAAAATGATAGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR TCA 72 bp | TGCAAACAAGCCTTGGTCTGCTTCAGTCACACTCGTTaGCTGACCTTGGAAAAAGAAAACCTAGAAACCTCA | + |
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Preference number: 3 (lower is better) Translates to: CKQALVCFSHTR*LTLEKENLETS Trigger: TGAGGTTTCTAGGTTTTCTTTTTCCAAGGTCAGTCAACGAGTGTGACTGAAGCAGACCAAGGCTTGTTTGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR GCA 72 bp | TTGAAATGTTTCTGGGTGTTTAGGTTCTGTGACTGGTaGATTGGGCTTCTGCTGACTAACTACATACTACAC | + |
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Preference number: 3 (lower is better) Translates to: LKCFWVFRFCDW*IGLLLTNYILH Trigger: GTGTAGTATGTAGTTAGTCAGCAGAAGCCCAATGCACCAGTCACAGAACCTAAACACCCAGAAACATTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR CCA 72 bp | CCATTGAAATGTTTCTGGGTGTTTAGGTTCTGTGACTaGTGCATTGGGCTTCTGCTGACTAACTACATACTA | + |
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Preference number: 3 (lower is better) Translates to: PLKCFWVFRFCD*CIGLLLTNYIL Trigger: TAGTATGTAGTTAGTCAGCAGAAGCCCAATGCACCAGTCACAGAACCTAAACACCCAGAAACATTTCAATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR CAA 90 bp | GCACTCGTGAATATAACACCATTGAAATGTTTCTGGGTGTTTAGGTTCTGTGACCGGAGTGCTATCATTTaGCAAGGACAAATAAGCAAT | + |
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Preference number: 3 (lower is better) Translates to: ALVNITPLKCFWVFRFCDRSAII*QGQISN Trigger: ATTGCTTATTTGTCCTTGCAAAATGATAGCACTCCG...GTCACAGAACCTAAACACCCAGAAACATTTCAATGGTGTTATATTCACGAGTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR TCA 72 bp | AAACAAATACCTAGTCATCATTATAAAGTAGACCCATaGTGTTCCCAAAATGTTATAGGGGGCTTCAGTCAG | + |
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Preference number: 3 (lower is better) Translates to: KQIPSHHYKVDP*CSQNVIGGFSQ Trigger: CTGACTGAAGCCCCCTATAACATTTTGGGAACATCATGGGTCTACTTTATAATGATGACTAGGTATTTGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR-3UTR CAA 90 bp | TGCTATCATTTTGCAAGGACAAATAAGCAATTCTTGGAATACCATGATCAAACCATTTACCAAATCCATTaGCATGCTTCCAGTCATGGT | + |
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Preference number: 3 (lower is better) Translates to: CYHFARTNKQFLEYHDQTIYQIH*HASSHG Trigger: ACCATGACTGGAAGCATGCAAATGGATTTGGTAAAT...GGTTTGATCATGGTATTCCAAGAATTGCTTATTTGTCCTTGCAAAATGATAGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR GCA 72 bp | ACAGACACTTTGAATAATCACAAAGTATCCTCGGAGTaGTATCATTTTGCAAGGACAAATAAGCAATTCTTG | + |
|
Preference number: 3 (lower is better) Translates to: TDTLNNHKVSSE*YHFARTNKQFL Trigger: CAAGAATTGCTTATTTGTCCTTGCAAAATGATAGCACTCCGAGGATACTTTGTGATTATTCAAAGTGTCTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR CCA 90 bp | GCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAGACTGCTGGTGCAGATaGACAGGCCCCGGGCCACCC | + |
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Preference number: 4 (lower is better) Translates to: AGWLCGEHPGINKGQLQTDCWCR*TGPGPP Trigger: GGGTGGCCCGGGGCCTGTCCATCTGCACCAGCAGTC...TGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | GCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACATGGCCTGGACCACAGTaGGGAGACTGCTGGTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: AGWLCGEHPGINKGQLQTWPGPQ*GDCWCR Trigger: TCTGCACCAGCAGTCTCCTCACTGTGGTCCAGGCCA...TGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | GCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACACCTCCCATGGCACCCTaGAACACTGCATCCCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: AGWLCGEHPGINKGQLQTPPMAP*NTASLR Trigger: CCTAAGGGATGCAGTGTTTCAGGGTGCCATGGGAGG...TGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | GCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAAGAAGGAGAACACTTTaGGCAGCTCTCAGCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: AGWLCGEHPGINKGQLQTRRRTL*AALSSG Trigger: CCCTGAGCTGAGAGCTGCTCAAAGTGTTCTCCTTCT...TGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | GAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAAGCCTTGGTCTGCTTCAGATGCATACTTTGGCCTaGGCCTCCTCCATCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: EHPGINKGQLQTSLGLLQMHTLA*ASSIQM Trigger: CATCTGGATGGAGGAGGCTCAGGCCAAAGTATGCAT...CTGAAGCAGACCAAGGCTTGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR CCA 90 bp | ACCCGGGCATTAACAAAGGGCAGCTGCAAACAAGCCTTGGTCTGCTTCAGTCACGTGCCATGCATACTTTaGCCTGAGCCTCCTCCATCC | + |
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Preference number: 4 (lower is better) Translates to: TRALTKGSCKQALVCFSHVPCIL*PEPPPS Trigger: GGATGGAGGAGGCTCAGGCCAAAGTATGCATGGCAC...GTGACTGAAGCAGACCAAGGCTTGTTTGCAGCTGCCCTTTGTTAATGCCCGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR GCA 90 bp | GCTGGATGGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAAAGAATGGAAGAATGTaGCATGCATACTTTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: AGWLCGEHPGINKGQLQTKNGRM*HAYFGL Trigger: CAGGCCAAAGTATGCATGGCACATTCTTCCATTCTT...TGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCCATCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR CCA 90 bp | GATGTTCACTTTCTGCTGTATCTCCAGTCTATTCCCGCAGAGAGCACTCGTGAAGTGCCATGCATACTTTaGCCTGAGCCTCCTCCATCC | + |
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Preference number: 4 (lower is better) Translates to: DVHFLLYLQSIPAESTREVPCIL*PEPPPS Trigger: GGATGGAGGAGGCTCAGGCCAAAGTATGCATGGCAC...TTCACGAGTGCTCTCTGCGGGAATAGACTGGAGATACAGCAGAAAGTGAACATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | ATTCCCGCAGAGAGCACTCGTGAATATAACACCATTGAAATGTTTCTGGGTGTTTGGCCTGGACCACAGTaGGGAGACTGCTGGTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: IPAESTREYNTIEMFLGVWPGPQ*GDCWCR Trigger: TCTGCACCAGCAGTCTCCTCACTGTGGTCCAGGCCA...AACACCCAGAAACATTTCAATGGTGTTATATTCACGAGTGCTCTCTGCGGGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | GATGTTCACTTTCTGCTGTATCTCCAGTCTATTCCCGCAGAGAGCACTCGTGAAATGCATACTTTGGCCTaGGCCTCCTCCATCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: DVHFLLYLQSIPAESTREMHTLA*ASSIQM Trigger: CATCTGGATGGAGGAGGCTCAGGCCAAAGTATGCAT...TTCACGAGTGCTCTCTGCGGGAATAGACTGGAGATACAGCAGAAAGTGAACATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | ATTCCCGCAGAGAGCACTCGTGAATATAACACCATTGAAATGTTTCTGGGTGTTCCTCCCATGGCACCCTaGAACACTGCATCCCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: IPAESTREYNTIEMFLGVPPMAP*NTASLR Trigger: CCTAAGGGATGCAGTGTTTCAGGGTGCCATGGGAGG...AACACCCAGAAACATTTCAATGGTGTTATATTCACGAGTGCTCTCTGCGGGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | GGCTCTGTGGAGAGCACCCGGGCATTAACAAAGGGCAGCTGCAAACAAGCCTTGAGGGTCAGAAACTCATaGATATTTACCATCAACGAA | + |
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Preference number: 4 (lower is better) Translates to: GSVESTRALTKGSCKQALRVRNS*IFTINE Trigger: TTCGTTGATGGTAAATATTCATGAGTTTCTGACCCT...CAAGGCTTGTTTGCAGCTGCCCTTTGTTAATGCCCGGGTGCTCTCCACAGAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR CCA 90 bp | TCATTCTTTCATAATTCTAAGAAGTCCTTTCCATGGATGGATTCTTACAGACACGACTGCTGGTGCAGATaGACAGGCCCCGGGCCACCC | + |
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Preference number: 4 (lower is better) Translates to: SFFHNSKKSFPWMDSYRHDCWCR*TGPGPP Trigger: GGGTGGCCCGGGGCCTGTCCATCTGCACCAGCAGTC...GTGTCTGTAAGAATCCATCCATGGAAAGGACTTCTTAGAATTATGAAAGAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | ATTCCCGCAGAGAGCACTCGTGAATATAACACCATTGAAATGTTTCTGGGTGTTAGAAGGAGAACACTTTaGGCAGCTCTCAGCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: IPAESTREYNTIEMFLGVRRRTL*AALSSG Trigger: CCCTGAGCTGAGAGCTGCTCAAAGTGTTCTCCTTCT...AACACCCAGAAACATTTCAATGGTGTTATATTCACGAGTGCTCTCTGCGGGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| 3UTR CAA 72 bp | CTGCAAACAAGCCTTGGTCTGCTTCAGTCACACTCGTaGACTGACCTTGGAAAAAGAAAACCTAGAAACCTC | + |
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Preference number: 4 (lower is better) Translates to: LQTSLGLLQSHS*TDLGKRKPRNL Trigger: GAGGTTTCTAGGTTTTCTTTTTCCAAGGTCAGTCAACGAGTGTGACTGAAGCAGACCAAGGCTTGTTTGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | TCAACTCCAAGCCTCAGGCATGCAGGCATACATATGTTACACAGTCATAAATGCCATCCCTTAGGACCATaGGAGGAAGAAAAATCCATT | + |
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Preference number: 4 (lower is better) Translates to: STPSLRHAGIHMLHSHKCHPLGP*EEEKSI Trigger: AATGGATTTTTCTTCCTCTCATGGTCCTAAGGGATG...GCATTTATGACTGTGTAACATATGTATGCCTGCATGCCTGAGGCTTGGAGTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR GCA 90 bp | CTGCTTCAGTCACACTCGTTGACTGACCTTGGAAAAAGAAAACCTAGAAACCTCAAGAATGGAAGAATGTaGCATGCATACTTTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLQSHSLTDLGKRKPRNLKNGRM*HAYFGL Trigger: CAGGCCAAAGTATGCATGGCACATTCTTCCATTCTT...GAGGTTTCTAGGTTTTCTTTTTCCAAGGTCAGTCAACGAGTGTGACTGAAGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | AAGATCACTGGCCGGCTTTTAGAGGTCCAAGATTCAATTTCAAGGAACCATATTGAGTACCCAAAAGAATaGCAAGAATGGAAGAATGTG | + |
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Preference number: 4 (lower is better) Translates to: KITGRLLEVQDSISRNHIEYPKE*QEWKNV Trigger: CACATTCTTCCATTCTTGTCATTCTTTTGGGTACTC...AATATGGTTCCTTGAAATTGAATCTTGGACCTCTAAAAGCCGGCCAGTGATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR GCA 90 bp | AAACATTACTGTGTGCTTGATGTTCACTTTCTGCTGTATCTCCAGTCTATTCCCTCTCCAGGTAAACAATaGTCTTACAGCCTATGTCAT | + |
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Preference number: 4 (lower is better) Translates to: KHYCVLDVHFLLYLQSIPSPGKQ*SYSLCH Trigger: ATGACATAGGCTGTAAGAGCATTGTTTACCTGGAGA...GGGAATAGACTGGAGATACAGCAGAAAGTGAACATCAAGCACACAGTAATGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR GCA 90 bp | GCACTCGTGAATATAACACCATTGAAATGTTTCTGGGTGTTTAGGTTCTGTGACTCTCCAGGTAAACAATaGTCTTACAGCCTATGTCAT | + |
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Preference number: 4 (lower is better) Translates to: ALVNITPLKCFWVFRFCDSPGKQ*SYSLCH Trigger: ATGACATAGGCTGTAAGAGCATTGTTTACCTGGAGA...GTCACAGAACCTAAACACCCAGAAACATTTCAATGGTGTTATATTCACGAGTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | AAACATTACTGTGTGCTTGATGTTCACTTTCTGCTGTATCTCCAGTCTATTCCCAGGGTCAGAAACTCATaGATATTTACCATCAACGAA | + |
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Preference number: 4 (lower is better) Translates to: KHYCVLDVHFLLYLQSIPRVRNS*IFTINE Trigger: TTCGTTGATGGTAAATATTCATGAGTTTCTGACCCT...GGGAATAGACTGGAGATACAGCAGAAAGTGAACATCAAGCACACAGTAATGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR TCA 90 bp | TGCTATCATTTTGCAAGGACAAATAAGCAATTCTTGGAATACCATGATCAAACCCATCCCTTAGGACCATaGGAGGAAGAAAAATCCATT | + |
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Preference number: 4 (lower is better) Translates to: CYHFARTNKQFLEYHDQTHPLGP*EEEKSI Trigger: AATGGATTTTTCTTCCTCTCATGGTCCTAAGGGATG...GGTTTGATCATGGTATTCCAAGAATTGCTTATTTGTCCTTGCAAAATGATAGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR CCA 90 bp | AGGCATGCAGGCATACATATGTTACACAGTCATAAATGCAGGAAAACGCTTCATTTTGTAAAAGCCAAGTaGATAAGAATGAGGTGTATG | + |
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Preference number: 4 (lower is better) Translates to: RHAGIHMLHSHKCRKTLHFVKAK*IRMRCM Trigger: CATACACCTCATTCTTATCCACTTGGCTTTTACAAA...ATGAAGCGTTTTCCTGCATTTATGACTGTGTAACATATGTATGCCTGCATGCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS CCA 90 bp | CACTTTGAGCAGCTCTCAGCTCAGGGGGAGTTCTGTAGAGAAGCTTaGAGTTCTGAAGGTAGAGGACATGTTGATGGTGTTTGTAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: HFEQLSAQGEFCREA*SSEGRGHVDGVCRE Trigger: TTCTCTACAAACACCATCAACATGTCCTCTACCTTCAGAACTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTCAAAGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077116.5 ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR CAA 90 bp | AAACATTACTGTGTGCTTGATGTTCACTTTCTGCTGTATCTCCAGTCTATTCCCAAGGTAGAGGACATGTaGATGGTGTTTGTAGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: KHYCVLDVHFLLYLQSIPKVEDM*MVFVEK Trigger: CTTCTCTACAAACACCATCAACATGTCCTCTACCTT...GGGAATAGACTGGAGATACAGCAGAAAGTGAACATCAAGCACACAGTAATGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS-3UTR CAA 90 bp | TCATTCTTTCATAATTCTAAGAAGTCCTTTCCATGGATGGATTCTTACAGACACAAGGTAGAGGACATGTaGATGGTGTTTGTAGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: SFFHNSKKSFPWMDSYRHKVEDM*MVFVEK Trigger: CTTCTCTACAAACACCATCAACATGTCCTCTACCTT...GTGTCTGTAAGAATCCATCCATGGAAAGGACTTCTTAGAATTATGAAAGAATGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS CCA 90 bp | CGAAATCCTTTTGTAAGAAGGATTAGGATGTTTGTAAAAGCCAAGTaGATAAGAATGAGGTGTATGGGTTTCTTCTTAACACCTTCTAAT | + |
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Preference number: 5 (lower is better) Translates to: RNPFVRRIRMFVKAK*IRMRCMGFFLTPSN Trigger: ATTAGAAGGTGTTAAGAAGAAACCCATACACCTCATTCTTATCCACTTGGCTTTTACAAACATCCTAATCCTTCTTACAAAAGGATTTCG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000077116.5 ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS CCA 72 bp | CAGCTCTCAGCTCAGGGGGAGTTCTGTAGAGAAGCTTaGAGTTCTGAAGGTAGAGGACATGTTGATGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: QLSAQGEFCREA*SSEGRGHVDGV Trigger: AACACCATCAACATGTCCTCTACCTTCAGAACTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000077116.5 ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS CAA 90 bp | GGGAGTTCTGTAGAGAAGCTTGGAGTTCTGAAGGTAGAGGACATGTaGATGGTGTTTGTAGAGAAGAAATACCATGTAGCCACTGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: GSSVEKLGVLKVEDM*MVFVEKKYHVATGA Trigger: GGCGCCAGTGGCTACATGGTATTTCTTCTCTACAAACACCATCAACATGTCCTCTACCTTCAGAACTCCAAGCTTCTCTACAGAACTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000077116.5 ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS CAA 90 bp | CTTGTATTTGTGGTAGAATGGATTAGGTTCACACTTATTAAACCATaGAGTACCCAAAAGAATGACAAGAATGGAAGAATGTGCCATGCA | + |
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Preference number: 6 (lower is better) Translates to: LVFVVEWIRFTLIKP*STQKNDKNGRMCHA Trigger: TGCATGGCACATTCTTCCATTCTTGTCATTCTTTTGGGTACTCAATGGTTTAATAAGTGTGAACCTAATCCATTCTACCACAAATACAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077116.5 ENSMUST00000226672.3 ENSMUST00000235574.2 |
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| CDS CAA 72 bp | GTGGTAGAATGGATTAGGTTCACACTTATTAAACCATaGAGTACCCAAAAGAATGACAAGAATGGAAGAATG | + |
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Preference number: 6 (lower is better) Translates to: VVEWIRFTLIKP*STQKNDKNGRM Trigger: CATTCTTCCATTCTTGTCATTCTTTTGGGTACTCAATGGTTTAATAAGTGTGAACCTAATCCATTCTACCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000077116.5 ENSMUST00000226672.3 ENSMUST00000235574.2 |
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