RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R219 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061376

Ensembl transcript IDs: ENSMUST00000076180.2, ENSMUST00000226845.2, ENSMUST00000227388.2, ENSMUST00000228113.2, ENSMUST00000228666.2

Found 184 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGACAGATCAGGCTGTCTGGGTGTCAGCAGGTGATTTTACTCTCTaGGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAAC +
Preference number: 1 (lower is better)
Translates to: ETDQAVWVSAGDFTL*VISHVLCPFLMLNN
Trigger: GTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTAAAATCACCTGCTGACACCCAGACAGCCTGATCTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 90 bp AGTACAACATTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTaGTGCATTGGGCCTCTGTTGACGAACTACATGGTACATATGTAC +
Preference number: 1 (lower is better)
Translates to: STTLLRCFRACMLCG*CIGPLLTNYMVHMY
Trigger: GTACATATGTACCATGTAGTTCGTCAACAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAATGTTGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 90 bp AACATGCCTAAAATCCCAGATTTTCTTATCCTTAGAACAGGAGTTTaGCTGTTTCTCTGTGGCACCAACAGACTCCAGCAGATAGGCTTC +
Preference number: 1 (lower is better)
Translates to: NMPKIPDFLILRTGV*LFLCGTNRLQQIGF
Trigger: GAAGCCTATCTGCTGGAGTCTGTTGGTGCCACAGAGAAACAGTCAAACTCCTGTTCTAAGGATAAGAAAATCTGGGATTTTAGGCATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 90 bp AAGATGAAAGCTGGCAAGCTCTATGTACCCACAGCTTCATACTTCTaGTTATATGAGGAACCAGCCATTAGCAGGATCCACAATAGGAAG +
Preference number: 1 (lower is better)
Translates to: KMKAGKLYVPTASYF*LYEEPAISRIHNRK
Trigger: CTTCCTATTGTGGATCCTGCTAATGGCTGGTTCCTCATATAATCAGAAGTATGAAGCTGTGGGTACATAGAGCTTGCCAGCTTTCATCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 90 bp ATTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTaGGCCTCTGTTGACGAACTACATGGTACATATGTACATTTGCAA +
Preference number: 1 (lower is better)
Translates to: IIEMFQGMYALWLVH*ASVDELHGTYVHLQ
Trigger: TTGCAAATGTACATATGTACCATGTAGTTCGTCAACAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 90 bp GTACTTAATCGCAGCTATTTCAGGATGCAGGGGCAGATGGATCTCTaGTTTCCAGGCCATGTTGTTTTACATAATGAGTATCTACAGATA +
Preference number: 1 (lower is better)
Translates to: VLNRSYFRMQGQMDL*FPGHVVLHNEYLQI
Trigger: TATCTGTAGATACTCATTATGTAAAACAACATGGCCTGGAAATCAGAGATCCATCTGCCCCTGCATCCTGAAATAGCTGCGATTAAGTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 90 bp AGACACTTAGAACAGGGCTTTACCATAAGAGCTGTGAGAATAACTTaGGCAATGGATGTTACCTACAGAGAACATTTTCATCAGAAAGAC +
Preference number: 1 (lower is better)
Translates to: RHLEQGFTIRAVRIT*AMDVTYREHFHQKD
Trigger: GTCTTTCTGATGAAAATGTTCTCTGTAGGTAACATCCATTGCTCAAGTTATTCTCACAGCTCTTATGGTAAAGCCCTGTTCTAAGTGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 90 bp GTACCTAAAACTCTCTTCAGGCCTGTATGGGTACCTGTACAAATTTaGCAAACATTCACACATACATTCCATATGTGTCTACATATTCAT +
Preference number: 1 (lower is better)
Translates to: VPKTLFRPVWVPVQI*QTFTHTFHMCLHIH
Trigger: ATGAATATGTAGACACATATGGAATGTATGTGTGAATGTTTGCCAAATTTGTACAGGTACCCATACAGGCCTGAAGAGAGTTTTAGGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 90 bp CTCCATGTTCTTACATCACTTTCTTTTGAGTCAAATTACACAAACTaGTTTAGAAGGTGTTGGTTTGTCTGGTTCTTTATGTCAGACACT +
Preference number: 1 (lower is better)
Translates to: LHVLTSLSFESNYTN*FRRCWFVWFFMSDT
Trigger: AGTGTCTGACATAAAGAACCAGACAAACCAACACCTTCTAAATCAGTTTGTGTAATTTGACTCAAAAGAAAGTGATGTAAGAACATGGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGCAAGGTTCCTCCCCTTaGCCCCTGCTGATCCTGAGT +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQQGSSP*PLLILS
Trigger: ACTCAGGATCAGCAGGGGCCAAGGGGAGGAACCTTG...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGACAAGGTTCCTCCCCTTaGCCCCTGCTGATCCTGAGT +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRQGSSP*PLLILS
Trigger: ACTCAGGATCAGCAGGGGCCAAGGGGAGGAACCTTG...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGGCTGCAAAGCAGCCTTaGTCAGCTTCAGTCACACTC +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQAAKQP*SASVTL
Trigger: GAGTGTGACTGAAGCTGACCAAGGCTGCTTTGCAGC...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGATGCTCTGTGGCTGGTaGATTGGGCCTCTGTTGACG +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKMLCGW*IGPLLT
Trigger: CGTCAACAGAGGCCCAATGCACCAGCCACAGAGCAT...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGGGTGGTGAAAAGACCTaGTCCTCTCTCAGAGACCTC +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKGGEKT*SSLRDL
Trigger: GAGGTCTCTGAGAGAGGAGCAGGTCTTTTCACCACC...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGACAGATCAGGCTGTCTaGGTGTCAGCAGGTGATTTT +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQTDQAV*VSAGDF
Trigger: AAAATCACCTGCTGACACCCAGACAGCCTGATCTGT...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGATCTCAGCACACATGTaGAGGTCAGATGACAGCATG +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQISAHM*RSDDSM
Trigger: CATGCTGTCATCTGACCTCCACATGTGTGCTGAGAT...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATTGACTGTTTCTCTGTaGCACCAACAGACTCCAGCA +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRLTVSL*HQQTPA
Trigger: TGCTGGAGTCTGTTGGTGCCACAGAGAAACAGTCAA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAACTGAATGGCATAACTaGTTTTTCCCCTCGTTGCCT +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRTEWHN*FFPSLP
Trigger: AGGCAACGAGGGGAAAAATCAGTTATGCCATTCAGT...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATGGCGCATGTTTATGTaGCCTATGAAACACCTTGTG +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRWRMFM*PMKHLV
Trigger: CACAAGGTGTTTCATAGGTCACATAAACATGCGCCA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATTTGGTATGTCCCTaGCTGTGTTCATGGGTGTAT +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQYLVCP*LCSWVY
Trigger: ATACACCCATGAACACAGGCAGGGACATACCAAATA...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGATCTCAGCACACATGTaGAGGTCAGATGACAGCATG +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKISAHM*RSDDSM
Trigger: CATGCTGTCATCTGACCTCCACATGTGTGCTGAGAT...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAGCTGTGAGAATAACTTaGGCAATGGATGTTACCTAC +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRAVRIT*AMDVTY
Trigger: GTAGGTAACATCCATTGCTCAAGTTATTCTCACAGC...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGACTGAATGGCATAACTaGTTTTTCCCCTCGTTGCCT +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKTEWHN*FFPSLP
Trigger: AGGCAACGAGGGGAAAAATCAGTTATGCCATTCAGT...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAACAGCTTCATACTTCTaGTTATATGAGGAACCAGCC +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRTASYF*LYEEPA
Trigger: GGCTGGTTCCTCATATAATCAGAAGTATGAAGCTGT...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp ACCAAAGGGCAGCTGCAAAGCAGCCTTGGTCAGCTTCAGTCACACTCCTTGATTTTCTTAACCACATGCTaGAGAACCCAGAGTTCTTTC +
Preference number: 2 (lower is better)
Translates to: TKGQLQSSLGQLQSHSLIFLTTC*RTQSSF
Trigger: GAAAGAACTCTGGGTTCTGCAGCATGTGGTTAAGAA...AATCAAGGAGTGTGACTGAAGCTGACCAAGGCTGCTTTGCAGCTGCCCTTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATTCTTAACCACATGCTaGAGAACCCAGAGTTCTTTC +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRFLTTC*RTQSSF
Trigger: GAAAGAACTCTGGGTTCTGCAGCATGTGGTTAAGAA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGACACGCCTTTCTTCATaGTTTCTCCATGTTCTTACA +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQTRLSS*FLHVLT
Trigger: TGTAAGAACATGGAGAAAGCATGAAGAAAGGCGTGT...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGGATTTTTCCCCTCGTTaGCTTTACTTTCCCTTACTT +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQDFSPR*LYFPLL
Trigger: AAGTAAGGGAAAGTAAAGGCAACGAGGGGAAAAATC...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGCAACAGATAAACTCATaGATCTCCAAGCATACAAGG +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQQQINS*ISKHTR
Trigger: CCTTGTATGCTTGGAGATGCATGAGTTTATCTGTTG...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGACTTATTTCTTGGGGCTaGAGTGATACCTCAGTCATT +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRLISWG*SDTSVI
Trigger: AATGACTGAGGTATCACTCCAGCCCCAAGAAATAAG...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp ACCAAAGGGCAGCTGCAAAGCAGCCTTGGTCAGCTTCAGTCACACTCCTTGATTCTTATTTCTTGGGGCTaGAGTGATACCTCAGTCATT +
Preference number: 2 (lower is better)
Translates to: TKGQLQSSLGQLQSHSLILISWG*SDTSVI
Trigger: AATGACTGAGGTATCACTCCAGCCCCAAGAAATAAG...AATCAAGGAGTGTGACTGAAGCTGACCAAGGCTGCTTTGCAGCTGCCCTTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATTTGAAGATGAAAGCTaGCAAGCTCTATGTACCCAC +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRFEDES*QALCTH
Trigger: GTGGGTACATAGAGCTTGCCAGCTTTCATCTTCAAA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 90 bp ATCTCCAGTCTGTTCCTGCAGAGAACACTCATGAGTACAACATTATaGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGG +
Preference number: 2 (lower is better)
Translates to: ISSLFLQRTLMSTTL*RCFRACMLCGWCIG
Trigger: CCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAATGTTGTACTCATGAGTGTTCTCTGCAGGAACAGACTGGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGCTCCTTGATTCATTTTaGAAAGGAGAACCTAGAAAC +
Preference number: 2 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQLLDSF*KGEPRN
Trigger: GTTTCTAGGTTCTCCTTTTCAAAATGAATCAAGGAG...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGGCTGTGAGAATAACTTaGGCAATGGATGTTACCTAC +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKAVRIT*AMDVTY
Trigger: GTAGGTAACATCCATTGCTCAAGTTATTCTCACAGC...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGACAGCTTCATACTTCTaGTTATATGAGGAACCAGCC +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKTASYF*LYEEPA
Trigger: GGCTGGTTCCTCATATAATCAGAAGTATGAAGCTGT...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATTTCCCTCCCTGGCCTaGGTAAAAAGAGCAGCAGCT +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVFPSLA*VKRAAA
Trigger: AGCTGCTGCTCTTTTTACTCAGGCCAGGGAGGGAAA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTAGGTGGTGAAAAGACCTaGTCCTCTCTCAGAGACCTC +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVGGEKT*SSLRDL
Trigger: GAGGTCTCTGAGAGAGGAGCAGGTCTTTTCACCACC...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTGGTGGTGAAAAGACCTaGTCCTCTCTCAGAGACCTC +
Preference number: 2 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPGGEKT*SSLRDL
Trigger: GAGGTCTCTGAGAGAGGAGCAGGTCTTTTCACCACC...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGTATTTGGTATGTCCCTaGCTGTGTTCATGGGTGTAT +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKYLVCP*LCSWVY
Trigger: ATACACCCATGAACACAGGCAGGGACATACCAAATA...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCATACCATGTAGCCACTaGCCCTCCCATTGCTCGCTG +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTIPCSH*PSHCSL
Trigger: CAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTAT...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTGCTGCAAAGCAGCCTTaGTCAGCTTCAGTCACACTC +
Preference number: 2 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPAAKQP*SASVTL
Trigger: GAGTGTGACTGAAGCTGACCAAGGCTGCTTTGCAGC...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGACCAGTCATTCTCCCTaGGATATAAATATCCCCTTG +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKTSHSP*DINIPL
Trigger: CAAGGGGATATTTATATCCCAGGGAGAATGACTGGT...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATACAGACAGATAAACTaGAATGTTGCTTTGTGCTGT +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRYRQIN*NVALCC
Trigger: ACAGCACAAAGCAACATTTCAGTTTATCTGTCTGTA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATTCAGTCACACTCCTTaGTTCATTTTGAAAAGGAGA +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRFSHTP*FILKRR
Trigger: TCTCCTTTTCAAAATGAATCAAGGAGTGTGACTGAA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGCAACAGATAAACTCATaGATCTCCAAGCATACAAGG +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKQQINS*ISKHTR
Trigger: CCTTGTATGCTTGGAGATGCATGAGTTTATCTGTTG...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGCTGCAAAGCAGCCTTaGTCAGCTTCAGTCACACTC +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTAAKQP*SASVTL
Trigger: GAGTGTGACTGAAGCTGACCAAGGCTGCTTTGCAGC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAATAGCTCTAGTTCCTTaGTACCTAAAACTCTCTTCA +
Preference number: 2 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRIALVP*YLKLSS
Trigger: TGAAGAGAGTTTTAGGTACCAAGGAACTAGAGCTAT...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTCAAGGTTCCTCCCCTTaGCCCCTGCTGATCCTGAGT +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKIQGSSP*PLLILS
Trigger: ACTCAGGATCAGCAGGGGCCAAGGGGAGGAACCTTG...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTAGGTCCAAAGGTCATTTaGGGTCATGTGTCCTTTCCC +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVGPKVI*GHVSFP
Trigger: GGGAAAGGACACATGACCCCAAATGACCTTTGGACC...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGTTCAGTCACACTCCTTaGTTCATTTTGAAAAGGAGA +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKFSHTP*FILKRR
Trigger: TCTCCTTTTCAAAATGAATCAAGGAGTGTGACTGAA...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGGATAAACTGAAATGTTaGTTTGTGCTGTATCTCCAG +
Preference number: 2 (lower is better)
Translates to: KKYHVATAPPIARCYSIKDKLKC*FVLYLQ
Trigger: CTGGAGATACAGCACAAAGCAACATTTCAGTTTATC...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATGGCGCATGTTTATGTaGCCTATGAAACACCTTGTG +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVWRMFM*PMKHLV
Trigger: CACAAGGTGTTTCATAGGTCACATAAACATGCGCCA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTCTCTTCAGGCCTGTATaGGTACCTGTACAAATTTGG +
Preference number: 2 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPLFRPV*VPVQIW
Trigger: CCAAATTTGTACAGGTACCCATACAGGCCTGAAGAG...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCATCTCAGCACACATGTaGAGGTCAGATGACAGCATG +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTISAHM*RSDDSM
Trigger: CATGCTGTCATCTGACCTCCACATGTGTGCTGAGAT...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 90 bp TGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGGCCTCTGTaGACGAACTACATGGTACATATGTACATTTGCAATTCTATAAAA +
Preference number: 2 (lower is better)
Translates to: CFRACMLCGWCIGPL*TNYMVHMYICNSIK
Trigger: TTTTATAGAATTGCAAATGTACATATGTACCATGTAGTTCGTCAACAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 90 bp AAGATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATaGGAGACTGTAGAAAATAAGTGTGTGTACACCATGGTCCAAAGG +
Preference number: 2 (lower is better)
Translates to: KIKGPTDVRGNAQIP*ETVENKCVYTMVQR
Trigger: CCTTTGGACCATGGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAATCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATTCTTAACCACATGCTaGAGAACCCAGAGTTCTTTC +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVFLTTC*RTQSSF
Trigger: GAAAGAACTCTGGGTTCTGCAGCATGTGGTTAAGAA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATCAAACCTCCCACCTTaGCATTACAGTTCATCTCTA +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVSNLPP*HYSSSL
Trigger: TAGAGATGAACTGTAATGGCAAGGTGGGAGGTTTGA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTACTTATTTCTTGGGGCTaGAGTGATACCTCAGTCATT +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVLISWG*SDTSVI
Trigger: AATGACTGAGGTATCACTCCAGCCCCAAGAAATAAG...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTAACCAGTCATTCTCCCTaGGATATAAATATCCCCTTG +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVTSHSP*DINIPL
Trigger: CAAGGGGATATTTATATCCCAGGGAGAATGACTGGT...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGCTGTGAGAATAACTTaGGCAATGGATGTTACCTAC +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTAVRIT*AMDVTY
Trigger: GTAGGTAACATCCATTGCTCAAGTTATTCTCACAGC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCTTCTTAACCACATGCTaGAGAACCCAGAGTTCTTTC +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTFLTTC*RTQSSF
Trigger: GAAAGAACTCTGGGTTCTGCAGCATGTGGTTAAGAA...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTAACACGCCTTTCTTCATaGTTTCTCCATGTTCTTACA +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVTRLSS*FLHVLT
Trigger: TGTAAGAACATGGAGAAAGCATGAAGAAAGGCGTGT...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCCTTATTTCTTGGGGCTaGAGTGATACCTCAGTCATT +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTLISWG*SDTSVI
Trigger: AATGACTGAGGTATCACTCCAGCCCCAAGAAATAAG...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTAGGTGTTGGTTTGTCTaGTTCTTTATGTCAGACACT +
Preference number: 2 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPRCWFV*FFMSDT
Trigger: AGTGTCTGACATAAAGAACCAGACAAACCAACACCT...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTTTGACTGTTTCTCTGTaGCACCAACAGACTCCAGCA +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKILTVSL*HQQTPA
Trigger: TGCTGGAGTCTGTTGGTGCCACAGAGAAACAGTCAA...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCTTTGAAGATGAAAGCTaGCAAGCTCTATGTACCCAC +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTFEDES*QALCTH
Trigger: GTGGGTACATAGAGCTTGCCAGCTTTCATCTTCAAA...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTTACAGACAGATAAACTaGAATGTTGCTTTGTGCTGT +
Preference number: 2 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPYRQIN*NVALCC
Trigger: ACAGCACAAAGCAACATTTCAGTTTATCTGTCTGTA...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTTTCAGTCACACTCCTTaGTTCATTTTGAAAAGGAGA +
Preference number: 2 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPFSHTP*FILKRR
Trigger: TCTCCTTTTCAAAATGAATCAAGGAGTGTGACTGAA...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTGGCCTAAGAATTGCATaGCCAAGGGTCAGAAATACT +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKIGLRIA*PRVRNT
Trigger: AGTATTTCTGACCCTTGGTCATGCAATTCTTAGGCC...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTAGATAAACTGAAATGTTaGTTTGTGCTGTATCTCCAG +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVDKLKC*FVLYLQ
Trigger: CTGGAGATACAGCACAAAGCAACATTTCAGTTTATC...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCTCTCTCAGAGACCTCTaGTTCCTTATTCAAAATCCA +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTSLRDL*FLIQNP
Trigger: TGGATTTTGAATAAGGAAGCAGAGGTCTCTGAGAGA...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGATTTTTCCCCTCGTTaGCTTTACTTTCCCTTACTT +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTDFSPR*LYFPLL
Trigger: AAGTAAGGGAAAGTAAAGGCAACGAGGGGAAAAATC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCCAACAGATAAACTCATaGATCTCCAAGCATACAAGG +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTQQINS*ISKHTR
Trigger: CCTTGTATGCTTGGAGATGCATGAGTTTATCTGTTG...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCATTAAGAGCACTGGCTaGCATTTAGCAGTTCAAGAT +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTIKSTG*HLAVQD
Trigger: ATCTTGAACTGCTAAATGCCAGCCAGTGCTCTTAAT...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTCTCTTCAGGCCTGTATaGGTACCTGTACAAATTTGG +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKILFRPV*VPVQIW
Trigger: CCAAATTTGTACAGGTACCCATACAGGCCTGAAGAG...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCAGGTGTTGGTTTGTCTaGTTCTTTATGTCAGACACT +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTRCWFV*FFMSDT
Trigger: AGTGTCTGACATAAAGAACCAGACAAACCAACACCT...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 90 bp CAGACACTTAGAACAGGGCTTTACCATAAGAGCTGTGAGAATAACTaGAGCAATGGATGTTACCTACAGAGAACATTTTCATCAGAAAGA +
Preference number: 2 (lower is better)
Translates to: QTLRTGLYHKSCENN*SNGCYLQRTFSSER
Trigger: TCTTTCTGATGAAAATGTTCTCTGTAGGTAACATCCATTGCTCAAGTTATTCTCACAGCTCTTATGGTAAAGCCCTGTTCTAAGTGTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCTACAGACAGATAAACTaGAATGTTGCTTTGTGCTGT +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTYRQIN*NVALCC
Trigger: ACAGCACAAAGCAACATTTCAGTTTATCTGTCTGTA...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR TCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCCTCCTTGATTCATTTTaGAAAGGAGAACCTAGAAAC +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTLLDSF*KGEPRN
Trigger: GTTTCTAGGTTCTCCTTTTCAAAATGAATCAAGGAG...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGATAAACTGAAATGTTaGTTTGTGCTGTATCTCCAG +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTDKLKC*FVLYLQ
Trigger: CTGGAGATACAGCACAAAGCAACATTTCAGTTTATC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTTATTTGGTATGTCCCTaGCTGTGTTCATGGGTGTAT +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKIYLVCP*LCSWVY
Trigger: ATACACCCATGAACACAGGCAGGGACATACCAAATA...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTCTAGGAATCATATTTTaGTTCAGAACCCTCTATCTT +
Preference number: 2 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPLGIIF*FRTLYL
Trigger: AAGATAGAGGGTTCTGAACCAAAATATGATTCCTAG...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTACTAGGAATCATATTTTaGTTCAGAACCCTCTATCTT +
Preference number: 2 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVLGIIF*FRTLYL
Trigger: AAGATAGAGGGTTCTGAACCAAAATATGATTCCTAG...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTGATTTTTCCCCTCGTTaGCTTTACTTTCCCTTACTT +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKIDFSPR*LYFPLL
Trigger: AAGTAAGGGAAAGTAAAGGCAACGAGGGGAAAAATC...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCCGAAATATTGAGCACTaGCATGTACAAAATTTTCCT +
Preference number: 2 (lower is better)
Translates to: RGNAQIPLETVENKCVYTRNIEH*HVQNFP
Trigger: AGGAAAATTTTGTACATGGCAGTGCTCAATATTTCG...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTATTAAGAGCACTGGCTaGCATTTAGCAGTTCAAGAT +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKIIKSTG*HLAVQD
Trigger: ATCTTGAACTGCTAAATGCCAGCCAGTGCTCTTAAT...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR GCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTGATAAACTGAAATGTTaGTTTGTGCTGTATCTCCAG +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKIDKLKC*FVLYLQ
Trigger: CTGGAGATACAGCACAAAGCAACATTTCAGTTTATC...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 90 bp TTTCTTTTGAGTCAAATTACACAAACTGATTTAGAAGGTGTTGGTTaGTCTGGTTCTTTATGTCAGACACTTAGAACAGGGCTTTACCAT +
Preference number: 2 (lower is better)
Translates to: FLLSQITQTDLEGVG*SGSLCQTLRTGLYH
Trigger: ATGGTAAAGCCCTGTTCTAAGTGTCTGACATAAAGAACCAGACAAACCAACACCTTCTAAATCAGTTTGTGTAATTTGACTCAAAAGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTCTAGGAATCATATTTTaGTTCAGAACCCTCTATCTT +
Preference number: 2 (lower is better)
Translates to: LAITVHLYEILSTAMYKILGIIF*FRTLYL
Trigger: AAGATAGAGGGTTCTGAACCAAAATATGATTCCTAG...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTACCAAGGTTCCTCCCCTaGGCCCCTGCTGATCCTGAG +
Preference number: 3 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVPRFLP*APADPE
Trigger: CTCAGGATCAGCAGGGGCCAAGGGGAGGAACCTTGG...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGCTGAGGAAAGAGTGTTaGTCCTTCTGGCTCTCTTGT +
Preference number: 3 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQLRKEC*SFWLSC
Trigger: ACAAGAGAGCCAGAAGGACAAACACTCTTTCCTCAG...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp TTCAGAGACAGATCAGGCTGTCTGGGTGTCAGCAGGTaGTTTTACTCTCTGAGTCATCTCTCACGTCCTCTG +
Preference number: 3 (lower is better)
Translates to: FRDRSGCLGVSR*FYSLSHLSRPL
Trigger: CAGAGGACGTGAGAGATGACTCAGAGAGTAAAATCACCTGCTGACACCCAGACAGCCTGATCTGTCTCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR GCA 72 bp CAGTGGCTCATGTACTTAATCGCAGCTATTTCAGGATaGAGGGGCAGATGGATCTCTGATTTCCAGGCCATG +
Preference number: 3 (lower is better)
Translates to: QWLMYLIAAISG*RGRWISDFQAM
Trigger: CATGGCCTGGAAATCAGAGATCCATCTGCCCCTGCATCCTGAAATAGCTGCGATTAAGTACATGAGCCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 72 bp ATCTCAGCACACATGTGGAGGTCAGATGACAGCATGTaGGGGTCAGTTTTCTTCTTCAGAGACAGATCAGGC +
Preference number: 3 (lower is better)
Translates to: ISAHMWRSDDSM*GSVFFFRDRSG
Trigger: GCCTGATCTGTCTCTGAAGAAGAAAACTGACCCCCACATGCTGTCATCTGACCTCCACATGTGTGCTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp CAGGCTGTCTGGGTGTCAGCAGGTGATTTTACTCTCTaGGTCATCTCTCACGTCCTCTGTCCATTCTTAATG +
Preference number: 3 (lower is better)
Translates to: QAVWVSAGDFTL*VISHVLCPFLM
Trigger: CATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTAAAATCACCTGCTGACACCCAGACAGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp TCATGGGTGTATCTCAGCACACATGTGGAGGTCAGATaGCAGCATGTGGGGGTCAGTTTTCTTCTTCAGAGA +
Preference number: 3 (lower is better)
Translates to: SWVYLSTHVEVR*QHVGVSFLLQR
Trigger: TCTCTGAAGAAGAAAACTGACCCCCACATGCTGTCATCTGACCTCCACATGTGTGCTGAGATACACCCATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR GCA 72 bp TTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTaGATTGGGCCTCTGTTGACGAACTACATGGTACAT +
Preference number: 3 (lower is better)
Translates to: LRCFRACMLCGW*IGPLLTNYMVH
Trigger: ATGTACCATGTAGTTCGTCAACAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR GCA 72 bp GGTAGTACTTGTGGAGAAGAAATACCATGTAGCCACTaGCCCTCCCATTGCTCGCTGCTACAGTATCAAGTA +
Preference number: 3 (lower is better)
Translates to: GSTCGEEIPCSH*PSHCSLLQYQV
Trigger: TACTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACAAGTACTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATAGCTCTAGTTCCTaGGTACCTAAAACTCTCTTC +
Preference number: 3 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQYSSSS*VPKTLF
Trigger: GAAGAGAGTTTTAGGTACCAAGGAACTAGAGCTATA...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCCCACTGCCCCTCCCATaGCTCGCTGCTACAGTATCA +
Preference number: 3 (lower is better)
Translates to: RGNAQIPLETVENKCVYTPLPLP*LAATVS
Trigger: TGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGG...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAGGTACCTGTACAAATTaGGCAAACATTCACACATAC +
Preference number: 3 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRGTCTN*ANIHTY
Trigger: GTATGTGTGAATGTTTGCCAAATTTGTACAGGTACC...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATATAGCTCTAGTTCCTaGGTACCTAAAACTCTCTTC +
Preference number: 3 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRYSSSS*VPKTLF
Trigger: GAAGAGAGTTTTAGGTACCAAGGAACTAGAGCTATA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp GCTGGCAAGCTCTATGTACCCACAGCTTCATACTTCTaGTTATATGAGGAACCAGCCATTAGCAGGATCCAC +
Preference number: 3 (lower is better)
Translates to: AGKLYVPTASYF*LYEEPAISRIH
Trigger: GTGGATCCTGCTAATGGCTGGTTCCTCATATAATCAGAAGTATGAAGCTGTGGGTACATAGAGCTTGCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR GCA 72 bp GGTGGTGAAAAGACCTGCTCCTCTCTCAGAGACCTCTaGTTCCTTATTCAAAATCCACATCATAGGACTCAG +
Preference number: 3 (lower is better)
Translates to: GGEKTCSSLRDL*FLIQNPHHRTQ
Trigger: CTGAGTCCTATGATGTGGATTTTGAATAAGGAAGCAGAGGTCTCTGAGAGAGGAGCAGGTCTTTTCACCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR GCA 72 bp GAAGCACATTCTGTGTTTTTGCCCCAACCAATAACATaGCACCATATGGATCCAACCAGTCATTCTCCCTGG +
Preference number: 3 (lower is better)
Translates to: EAHSVFLPQPIT*HHMDPTSHSPW
Trigger: CCAGGGAGAATGACTGGTTGGATCCATATGGTGGCATGTTATTGGTTGGGGCAAAAACACAGAATGTGCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 72 bp ATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTaGGCCTCTGTTGACGAACTACATGGTACATATGTA +
Preference number: 3 (lower is better)
Translates to: MFQGMYALWLVH*ASVDELHGTYV
Trigger: TACATATGTACCATGTAGTTCGTCAACAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 72 bp TTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTaGTGCATTGGGCCTCTGTTGACGAACTACATGGTA +
Preference number: 3 (lower is better)
Translates to: LLRCFRACMLCG*CIGPLLTNYMV
Trigger: TACCATGTAGTTCGTCAACAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGCTTCAGTCACACTCCTaGATTCATTTTGAAAAGGAG +
Preference number: 3 (lower is better)
Translates to: KKYHVATAPPIARCYSIKLQSHS*IHFEKE
Trigger: CTCCTTTTCAAAATGAATCAAGGAGTGTGACTGAAG...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGGGTACCTGTACAAATTaGGCAAACATTCACACATAC +
Preference number: 3 (lower is better)
Translates to: KKYHVATAPPIARCYSIKGTCTN*ANIHTY
Trigger: GTATGTGTGAATGTTTGCCAAATTTGTACAGGTACC...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTAAGACTTCTCAAAGCCTaGATCCCCCAGTGTACATGG +
Preference number: 3 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVRLLKA*IPQCTW
Trigger: CCATGTACACTGGGGGATCAAGGCTTTGAGAAGTCT...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp CATCTCCAAGCATACAAGGACTGGCGCATGTTTATGTaGCCTATGAAACACCTTGTGGTGGACTTCCTTTCT +
Preference number: 3 (lower is better)
Translates to: HLQAYKDWRMFM*PMKHLVVDFLS
Trigger: AGAAAGGAAGTCCACCACAAGGTGTTTCATAGGTCACATAAACATGCGCCAGTCCTTGTATGCTTGGAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp AGTTTAGGTCTCCTCAGAGCTTCAGTTTACCAGCATTaGTGTCTGAAAGGCAGTCATCTGCCTAAGCTACAG +
Preference number: 3 (lower is better)
Translates to: SLGLLRASVYQH*CLKGSHLPKLQ
Trigger: CTGTAGCTTAGGCAGATGACTGCCTTTCAGACATCAATGCTGGTAAACTGAAGCTCTGAGGAGACCTAAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 72 bp ACATGCCACCATATGGATCCAACCAGTCATTCTCCCTaGGATATAAATATCCCCTTGCCCCTCCAAGAAAAA +
Preference number: 3 (lower is better)
Translates to: TCHHMDPTSHSP*DINIPLPLQEK
Trigger: TTTTTCTTGGAGGGGCAAGGGGATATTTATATCCCAGGGAGAATGACTGGTTGGATCCATATGGTGGCATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 72 bp CTAGATGGACAATTAAATCACTTCATGAGGGCAGAGTaGAGATCGAGGTGTCCCTGTCACTTTAAGAGACAG +
Preference number: 3 (lower is better)
Translates to: LDGQLNHFMRAE*RSRCPCHFKRQ
Trigger: CTGTCTCTTAAAGTGACAGGGACACCTCGATCTCCACTCTGCCCTCATGAAGTGATTTAATTGTCCATCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGTCTAGGAATCATATTTaGGTTCAGAACCCTCTATCT +
Preference number: 3 (lower is better)
Translates to: KKYHVATAPPIARCYSIKSRNHI*VQNPLS
Trigger: AGATAGAGGGTTCTGAACCAAAATATGATTCCTAGA...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp TTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGGCCTCTGTCTAGGAATCATATTTaGGTTCAGAACCCTCTATCT +
Preference number: 3 (lower is better)
Translates to: LLRCFRACMLCGWCIGPLSRNHI*VQNPLS
Trigger: AGATAGAGGGTTCTGAACCAAAATATGATTCCTAGA...CAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTACTGAGGAAAGAGTGTTaGTCCTTCTGGCTCTCTTGT +
Preference number: 3 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVLRKEC*SFWLSC
Trigger: ACAAGAGAGCCAGAAGGACAAACACTCTTTCCTCAG...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCAGACTTCTCAAAGCCTaGATCCCCCAGTGTACATGG +
Preference number: 3 (lower is better)
Translates to: RGNAQIPLETVENKCVYTRLLKA*IPQCTW
Trigger: CCATGTACACTGGGGGATCAAGGCTTTGAGAAGTCT...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp CGCAGCTATTTCAGGATGCAGGGGCAGATGGATCTCTaGTTTCCAGGCCATGTTGTTTTACATAATGAGTAT +
Preference number: 3 (lower is better)
Translates to: RSYFRMQGQMDL*FPGHVVLHNEY
Trigger: ATACTCATTATGTAAAACAACATGGCCTGGAAATCAGAGATCCATCTGCCCCTGCATCCTGAAATAGCTGCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCCTGAGGAAAGAGTGTTaGTCCTTCTGGCTCTCTTGT +
Preference number: 3 (lower is better)
Translates to: RGNAQIPLETVENKCVYTLRKEC*SFWLSC
Trigger: ACAAGAGAGCCAGAAGGACAAACACTCTTTCCTCAG...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CCA 72 bp GGCTGGAGTGATACCTCAGTCATTAAGAGCACTGGCTaGCATTTAGCAGTTCAAGATTCAATTTCTAGGAAT +
Preference number: 3 (lower is better)
Translates to: GWSDTSVIKSTG*HLAVQDSISRN
Trigger: ATTCCTAGAAATTGAATCTTGAACTGCTAAATGCCAGCCAGTGCTCTTAATGACTGAGGTATCACTCCAGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATTCAGTTTACCAGCATaGATGTCTGAAAGGCAGTCA +
Preference number: 3 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVFSLPA*MSERQS
Trigger: TGACTGCCTTTCAGACATCAATGCTGGTAAACTGAA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTCTTCAGTCACACTCCTaGATTCATTTTGAAAAGGAG +
Preference number: 3 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPLQSHS*IHFEKE
Trigger: CTCCTTTTCAAAATGAATCAAGGAGTGTGACTGAAG...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTTATAGCTCTAGTTCCTaGGTACCTAAAACTCTCTTC +
Preference number: 3 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPYSSSS*VPKTLF
Trigger: GAAGAGAGTTTTAGGTACCAAGGAACTAGAGCTATA...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTACATGATAGGGAAATTTaGAAGATGAAAGCTGGCAAG +
Preference number: 3 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVHDREI*KMKAGK
Trigger: CTTGCCAGCTTTCATCTTCAAAATTTCCCTATCATG...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTACATCTCTACGAAATATaGAGCACTGCCATGTACAAA +
Preference number: 3 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVHLYEI*STAMYK
Trigger: TTTGTACATGGCAGTGCTCAATATTTCGTAGAGATG...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGGTACCTGTACAAATTaGGCAAACATTCACACATAC +
Preference number: 3 (lower is better)
Translates to: RGNAQIPLETVENKCVYTGTCTN*ANIHTY
Trigger: GTATGTGTGAATGTTTGCCAAATTTGTACAGGTACC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR TCA 72 bp TGCCAAATCTCTTATGAGTTAACTGAATGGCATAACTaGTTTTTCCCCTCGTTGCCTTTACTTTCCCTTACT +
Preference number: 3 (lower is better)
Translates to: CQISYELTEWHN*FFPSLPLLSLT
Trigger: AGTAAGGGAAAGTAAAGGCAACGAGGGGAAAAATCAGTTATGCCATTCAGTTAACTCATAAGAGATTTGGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTTATAGCTCTAGTTCCTaGGTACCTAAAACTCTCTTC +
Preference number: 3 (lower is better)
Translates to: LAITVHLYEILSTAMYKIYSSSS*VPKTLF
Trigger: GAAGAGAGTTTTAGGTACCAAGGAACTAGAGCTATA...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR-3UTR CAA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTTCTAGGAATCATATTTaGGTTCAGAACCCTCTATCT +
Preference number: 3 (lower is better)
Translates to: LAITVHLYEILSTAMYKISRNHI*VQNPLS
Trigger: AGATAGAGGGTTCTGAACCAAAATATGATTCCTAGA...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGATGCAGACTTTGGCCTaGGTCTGCTCCACCCAGATG +
Preference number: 4 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQMQTLA*VCSTQM
Trigger: CATCTGGGTGGAGCAGACTCAGGCCAAAGTCTGCAT...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGGCCTCTGTGGCCTGGACCACAGTaGGGAAACTGCTGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: LLRCFRACMLCGWCIGPLWPGPQ*GNCWCR
Trigger: TCTGCACCAGCAGTTTCCTCACTGTGGTCCAGGCCA...CAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAATGCAGACTTTGGCCTaGGTCTGCTCCACCCAGATG +
Preference number: 4 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRMQTLA*VCSTQM
Trigger: CATCTGGGTGGAGCAGACTCAGGCCAAAGTCTGCAT...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGGCCTCTGCCTCCCATGGCACCCTaGAACACTGCATCTCTCAGG +
Preference number: 4 (lower is better)
Translates to: LLRCFRACMLCGWCIGPLPPMAP*NTASLR
Trigger: CCTGAGAGATGCAGTGTTTCAGGGTGCCATGGGAGG...CAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGCCTCCCATGGCACCCTaGAACACTGCATCTCTCAGG +
Preference number: 4 (lower is better)
Translates to: KKYHVATAPPIARCYSIKPPMAP*NTASLR
Trigger: CCTGAGAGATGCAGTGTTTCAGGGTGCCATGGGAGG...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAAAAAGTCCATCCCTGTaGATCAGCAGGAGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRKSPSL*ISRRGL
Trigger: CAGCCCCCTCCTGCTGATTCACAGGGATGGACTTTT...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATCAGCAGGAGGGGGCTaGAAACTGCATAACCAAGGG +
Preference number: 4 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRSAGGG*KLHNQG
Trigger: CCCTTGGTTATGCAGTTTCCAGCCCCCTCCTGCTGA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGGCCTCTGAAAAGTCCATCCCTGTaGATCAGCAGGAGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: LLRCFRACMLCGWCIGPLKSPSL*ISRRGL
Trigger: CAGCCCCCTCCTGCTGATTCACAGGGATGGACTTTT...CAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGTCAGCAGGAGGGGGCTaGAAACTGCATAACCAAGGG +
Preference number: 4 (lower is better)
Translates to: KKYHVATAPPIARCYSIKSAGGG*KLHNQG
Trigger: CCCTTGGTTATGCAGTTTCCAGCCCCCTCCTGCTGA...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR GCA 90 bp TTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGGCCTCTGGAGGGGGCTGGAAACTaGATAACCAAGGGTCACAGA +
Preference number: 4 (lower is better)
Translates to: LLRCFRACMLCGWCIGPLEGAGN*ITKGHR
Trigger: TCTGTGACCCTTGGTTATGCAGTTTCCAGCCCCCTC...CAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR GCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGGAGGGGGCTGGAAACTaGATAACCAAGGGTCACAGA +
Preference number: 4 (lower is better)
Translates to: KKYHVATAPPIARCYSIKEGAGN*ITKGHR
Trigger: TCTGTGACCCTTGGTTATGCAGTTTCCAGCCCCCTC...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp ACCAAAGGGCAGCTGCAAAGCAGCCTTGGTCAGCTTCAGTCACACTCCTTGATTCTGATGATGATGGCCTaGACCACAGTGAGGAAACTG +
Preference number: 4 (lower is better)
Translates to: TKGQLQSSLGQLQSHSLILMMMA*TTVRKL
Trigger: CAGTTTCCTCACTGTGGTCCAGGCCATCATCATCAG...AATCAAGGAGTGTGACTGAAGCTGACCAAGGCTGCTTTGCAGCTGCCCTTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TGTGGAGAAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGGGCTTCCCCACCAACTaGACATATAATGCACAGAAA +
Preference number: 4 (lower is better)
Translates to: CGEEIPCSHCPSHCSLLQGFPTN*TYNAQK
Trigger: TTTCTGTGCATTATATGTTCAGTTGGTGGGGAAGCC...CTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTTCTCCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGCTGATGATGATGGCCTaGACCACAGTGAGGAAACTG +
Preference number: 4 (lower is better)
Translates to: KKYHVATAPPIARCYSIKLMMMA*TTVRKL
Trigger: CAGTTTCCTCACTGTGGTCCAGGCCATCATCATCAG...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp ACCAAAGGGCAGCTGCAAAGCAGCCTTGGTCAGCTTCAGTCACACTCCTTGATTGGCTTCCCCACCAACTaGACATATAATGCACAGAAA +
Preference number: 4 (lower is better)
Translates to: TKGQLQSSLGQLQSHSLIGFPTN*TYNAQK
Trigger: TTTCTGTGCATTATATGTTCAGTTGGTGGGGAAGCC...AATCAAGGAGTGTGACTGAAGCTGACCAAGGCTGCTTTGCAGCTGCCCTTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATGGCCTGGACCACAGTaGGGAAACTGCTGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVWPGPQ*GNCWCR
Trigger: TCTGCACCAGCAGTTTCCTCACTGTGGTCCAGGCCA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 72 bp AAAATAAGTGTGTGTACACCATGGTCCAAAGGTCATTaGGGGTCATGTGTCCTTTCCCTCCCTGGCCTGAGT +
Preference number: 4 (lower is better)
Translates to: KISVCTPWSKGH*GSCVLSLPGLS
Trigger: ACTCAGGCCAGGGAGGGAAAGGACACATGACCCCAAATGACCTTTGGACCATGGTGTACACACACTTATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGGGCTTCCCCACCAACTaGACATATAATGCACAGAAA +
Preference number: 4 (lower is better)
Translates to: KKYHVATAPPIARCYSIKGFPTN*TYNAQK
Trigger: TTTCTGTGCATTATATGTTCAGTTGGTGGGGAAGCC...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTAATGCAGACTTTGGCCTaGGTCTGCTCCACCCAGATG +
Preference number: 4 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVMQTLA*VCSTQM
Trigger: CATCTGGGTGGAGCAGACTCAGGCCAAAGTCTGCAT...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCCCTCCCATGGCACCCTaGAACACTGCATCTCTCAGG +
Preference number: 4 (lower is better)
Translates to: RGNAQIPLETVENKCVYTPPMAP*NTASLR
Trigger: CCTGAGAGATGCAGTGTTTCAGGGTGCCATGGGAGG...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTAAAAGTCCATCCCTGTaGATCAGCAGGAGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPKSPSL*ISRRGL
Trigger: CAGCCCCCTCCTGCTGATTCACAGGGATGGACTTTT...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TTATTGAGATGTTTCAGGGCATGTATGCTCTGTGGCTGGTGCATTGGGCCTCTGCTCAATGTCTCCCATTaGGAATGGCAACATTCAGTC +
Preference number: 4 (lower is better)
Translates to: LLRCFRACMLCGWCIGPLLNVSH*EWQHSV
Trigger: GACTGAATGTTGCCATTCTCAATGGGAGACATTGAG...CAGAGGCCCAATGCACCAGCCACAGAGCATACATGCCCTGAAACATCTCAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGCTCAATGTCTCCCATTaGGAATGGCAACATTCAGTC +
Preference number: 4 (lower is better)
Translates to: KKYHVATAPPIARCYSIKLNVSH*EWQHSV
Trigger: GACTGAATGTTGCCATTCTCAATGGGAGACATTGAG...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGTGCCATGCAGACTTTaGCCTGAGTCTGCTCCACCC +
Preference number: 4 (lower is better)
Translates to: RGNAQIPLETVENKCVYTVPCRL*PESAPP
Trigger: GGGTGGAGCAGACTCAGGCCAAAGTCTGCATGGCAC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTTCAGCAGGAGGGGGCTaGAAACTGCATAACCAAGGG +
Preference number: 4 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPSAGGG*KLHNQG
Trigger: CCCTTGGTTATGCAGTTTCCAGCCCCCTCCTGCTGA...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTTGGCCTGGACCACAGTaGGGAAACTGCTGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: LAITVHLYEILSTAMYKIWPGPQ*GNCWCR
Trigger: TCTGCACCAGCAGTTTCCTCACTGTGGTCCAGGCCA...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAGAATATCCAAAAGAATaGGAAGAATGGAAGGATGTG +
Preference number: 4 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGREYPKE*EEWKDV
Trigger: CACATCCTTCCATTCTTCTCATTCTTTTGGATATTC...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGAAGGGTCACAGATTCATaGATACTTACCATCAACAAA +
Preference number: 4 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRRVTDS*ILTINK
Trigger: TTTGTTGATGGTAAGTATTCATGAATCTGTGACCCT...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR GCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGAGGGGGCTGGAAACTaGATAACCAAGGGTCACAGA +
Preference number: 4 (lower is better)
Translates to: RGNAQIPLETVENKCVYTEGAGN*ITKGHR
Trigger: TCTGTGACCCTTGGTTATGCAGTTTCCAGCCCCCTC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTCTGATGATGATGGCCTaGACCACAGTGAGGAAACTG +
Preference number: 4 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPLMMMA*TTVRKL
Trigger: CAGTTTCCTCACTGTGGTCCAGGCCATCATCATCAG...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTGTGCCATGCAGACTTTaGCCTGAGTCTGCTCCACCC +
Preference number: 4 (lower is better)
Translates to: LAITVHLYEILSTAMYKIVPCRL*PESAPP
Trigger: GGGTGGAGCAGACTCAGGCCAAAGTCTGCATGGCAC...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTATGCAGACTTTGGCCTaGGTCTGCTCCACCCAGATG +
Preference number: 4 (lower is better)
Translates to: LAITVHLYEILSTAMYKIMQTLA*VCSTQM
Trigger: CATCTGGGTGGAGCAGACTCAGGCCAAAGTCTGCAT...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AAGAAATACCATGTAGCCACTGCCCCTCCCATTGCTCGCTGCTACAGTATCAAGAGGGTCACAGATTCATaGATACTTACCATCAACAAA +
Preference number: 4 (lower is better)
Translates to: KKYHVATAPPIARCYSIKRVTDS*ILTINK
Trigger: TTTGTTGATGGTAAGTATTCATGAATCTGTGACCCT...CTTGATACTGTAGCAGCGAGCAATGGGAGGGGCAGTGGCTACATGGTATTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 72 bp ATCATAGGACTCAGGATAGCCTATAGCTCTAGTTCCTaGGTACCTAAAACTCTCTTCAGGCCTGTATGGGTA +
Preference number: 4 (lower is better)
Translates to: IIGLRIAYSSSS*VPKTLFRPVWV
Trigger: TACCCATACAGGCCTGAAGAGAGTTTTAGGTACCAAGGAACTAGAGCTATAGGCTATCCTGAGTCCTATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTCTCAATGTCTCCCATTaGGAATGGCAACATTCAGTC +
Preference number: 4 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPLNVSH*EWQHSV
Trigger: GACTGAATGTTGCCATTCTCAATGGGAGACATTGAG...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR GCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTGAGGGGGCTGGAAACTaGATAACCAAGGGTCACAGA +
Preference number: 4 (lower is better)
Translates to: LAITVHLYEILSTAMYKIEGAGN*ITKGHR
Trigger: TCTGTGACCCTTGGTTATGCAGTTTCCAGCCCCCTC...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 72 bp GATCCTGAGTATGCAAATGAAGCACATTCTGTGTTTTaGCCCCAACCAATAACATGCCACCATATGGATCCA +
Preference number: 4 (lower is better)
Translates to: DPEYANEAHSVF*PQPITCHHMDP
Trigger: TGGATCCATATGGTGGCATGTTATTGGTTGGGGCAAAAACACAGAATGTGCTTCATTTGCATACTCAGGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGGCTTCCCCACCAACTaGACATATAATGCACAGAAA +
Preference number: 4 (lower is better)
Translates to: RGNAQIPLETVENKCVYTGFPTN*TYNAQK
Trigger: TTTCTGTGCATTATATGTTCAGTTGGTGGGGAAGCC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATCTCCAGGTAAACAATaGTCTTGCAGCCTATGTCAT +
Preference number: 4 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVSPGKQ*SCSLCH
Trigger: ATGACATAGGCTGCAAGATCATTGTTTACCTGGAGA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 72 bp TCCCACCTTGCCATTACAGTTCATCTCTACGAAATATaGAGCACTGCCATGTACAAAATTTTCCTGTTAGTC +
Preference number: 4 (lower is better)
Translates to: SHLAITVHLYEI*STAMYKIFLLV
Trigger: GACTAACAGGAAAATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAGGTGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCGAATATCCAAAAGAATaGGAAGAATGGAAGGATGTG +
Preference number: 4 (lower is better)
Translates to: RGNAQIPLETVENKCVYTEYPKE*EEWKDV
Trigger: CACATCCTTCCATTCTTCTCATTCTTTTGGATATTC...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp AGAGGAAATGCTCAGATACCATTGGAGACTGTAGAAAATAAGTGTGTGTACACCAGGGTCACAGATTCATaGATACTTACCATCAACAAA +
Preference number: 4 (lower is better)
Translates to: RGNAQIPLETVENKCVYTRVTDS*ILTINK
Trigger: TTTGTTGATGGTAAGTATTCATGAATCTGTGACCCT...GGTGTACACACACTTATTTTCTACAGTCTCCAATGGTATCTGAGCATTTCCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 72 bp AGAACAGGGCTTTACCATAAGAGCTGTGAGAATAACTaGAGCAATGGATGTTACCTACAGAGAACATTTTCA +
Preference number: 4 (lower is better)
Translates to: RTGLYHKSCENN*SNGCYLQRTFS
Trigger: TGAAAATGTTCTCTGTAGGTAACATCCATTGCTCAAGTTATTCTCACAGCTCTTATGGTAAAGCCCTGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
3UTR CAA 72 bp AGTCAAATTACACAAACTGATTTAGAAGGTGTTGGTTaGTCTGGTTCTTTATGTCAGACACTTAGAACAGGG +
Preference number: 4 (lower is better)
Translates to: SQITQTDLEGVG*SGSLCQTLRTG
Trigger: CCCTGTTCTAAGTGTCTGACATAAAGAACCAGACAAACCAACACCTTCTAAATCAGTTTGTGTAATTTGACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR TCA 90 bp CTTGCCATTACAGTTCATCTCTACGAAATATTGAGCACTGCCATGTACAAAATTGAATATCCAAAAGAATaGGAAGAATGGAAGGATGTG +
Preference number: 4 (lower is better)
Translates to: LAITVHLYEILSTAMYKIEYPKE*EEWKDV
Trigger: CACATCCTTCCATTCTTCTCATTCTTTTGGATATTC...AATTTTGTACATGGCAGTGCTCAATATTTCGTAGAGATGAACTGTAATGGCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS GCA 90 bp AAATACCATGTAGCCACTGGCCCCTCCCATGGCACCCTGAAACACTaGATCTCTCAGGACCATGAGAGGGAGAACAATCCATTTGATTTC +
Preference number: 5 (lower is better)
Translates to: KYHVATGPSHGTLKH*ISQDHERENNPFDF
Trigger: GAAATCAAATGGATTGTTCTCCCTCTCATGGTCCTGAGAGATGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCTACATGGTATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076180.2
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CAA 90 bp GCAACAAGCAGCTCTCAGCTCAAGGGGAGTTCTGTAGAGAAGCTTGGAGGTAGATCTCAATGTCTCCCATaGAGAATGGCAACATTCAGT +
Preference number: 5 (lower is better)
Translates to: ATSSSQLKGSSVEKLGGRSQCLP*RMATFS
Trigger: ACTGAATGTTGCCATTCTCAATGGGAGACATTGAGA...TCTACCTCCAAGCTTCTCTACAGAACTCCCCTTGAGCTGAGAGCTGCTTGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS GCA 90 bp ATTAAACCATTGAATATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCATGCAGACTTTGGCCTGAGTCTGCTCCACCCAGATGCTCTG +
Preference number: 5 (lower is better)
Translates to: IKPLNIQKNEKNGRM*HADFGLSLLHPDAL
Trigger: CAGAGCATCTGGGTGGAGCAGACTCAGGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATATTCAATGGTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076180.2
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CAA 90 bp ATTAAAGGTCCCACTGATGTGAGAGGAAATGCTCAGATACCATTGGAGACTGTATCTCAATGTCTCCCATaGAGAATGGCAACATTCAGT +
Preference number: 5 (lower is better)
Translates to: IKGPTDVRGNAQIPLETVSQCLP*RMATFS
Trigger: ACTGAATGTTGCCATTCTCAATGGGAGACATTGAGA...TACAGTCTCCAATGGTATCTGAGCATTTCCTCTCACATCAGTGGGACCTTTAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS-3UTR CAA 90 bp TACTCTCTGAGTCATCTCTCACGTCCTCTGTCCATTCTTAATGTTGAACAACCTTCTCAATGTCTCCCATaGAGAATGGCAACATTCAGT +
Preference number: 5 (lower is better)
Translates to: YSLSHLSRPLSILNVEQPSQCLP*RMATFS
Trigger: ACTGAATGTTGCCATTCTCAATGGGAGACATTGAGA...AGGTTGTTCAACATTAAGAATGGACAGAGGACGTGAGAGATGACTCAGAGAGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS GCA 72 bp TTGAATATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCATGCAGACTTTGGCCTGAGTCTGCTCCACCCA +
Preference number: 6 (lower is better)
Translates to: LNIQKNEKNGRM*HADFGLSLLHP
Trigger: TGGGTGGAGCAGACTCAGGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATATTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076180.2
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2
CDS TCA 72 bp TATAGTAGAGAGAGACAGTTTCTCAATGTCTCCCATTaGGAATGGCAACATTCAGTCAAAAGTCCATCCCTG +
Preference number: 6 (lower is better)
Translates to: YSRERQFLNVSH*EWQHSVKSPSL
Trigger: CAGGGATGGACTTTTGACTGAATGTTGCCATTCTCAATGGGAGACATTGAGAAACTGTCTCTCTCTACTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076180.2
ENSMUST00000226845.2
ENSMUST00000227388.2
ENSMUST00000228113.2
ENSMUST00000228666.2