Pregenerated sensors for VMN1R215 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000099917Ensembl transcript IDs: ENSMUST00000072972.5, ENSMUST00000228092.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCCCGAGAGACCCATTCCACACAGACACAGGGACCCAGAGGGTCTaGGGCAGGTTTGCATGTGGGAAAGGGAACCTAACAAACACTGGT | + |
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Preference number: 1 (lower is better) Translates to: CPRDPFHTDTGTQRV*GRFACGKGNLTNTG Trigger: ACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAACCTGCCGCAGACCCTCTGGGTCCCTGTGTCTGTGTGGAATGGGTCTCTCGGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR CCA 90 bp | CCACACAGACACAGGGACCCAGAGGGTCTGCGGCAGGTTTGCATGTaGGAAAGGGAACCTAACAAACACTGGTTGTTCAGTGGAGGCCAT | + |
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Preference number: 1 (lower is better) Translates to: PHRHRDPEGLRQVCM*EREPNKHWLFSGGH Trigger: ATGGCCTCCACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAACCTGCCGCAGACCCTCTGGGTCCCTGTGTCTGTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR GCA 90 bp | CCCATTCCACACAGACACAGGGACCCAGAGGGTCTGCGGCAGGTTTaGATGTGGGAAAGGGAACCTAACAAACACTGGTTGTTCAGTGGA | + |
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Preference number: 1 (lower is better) Translates to: PIPHRHRDPEGLRQV*MWEREPNKHWLFSG Trigger: TCCACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAACCTGCCGCAGACCCTCTGGGTCCCTGTGTCTGTGTGGAATGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR CCA 90 bp | GAAAATGACAGTTTGGTAAGAGAGGAATATTGTAATCCCAACATTTaGGGTGCTTTTACCTCAAGATCAGCTGTGCTGCATACAGACTGC | + |
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Preference number: 1 (lower is better) Translates to: ENDSLVREEYCNPNI*GAFTSRSAVLHTDC Trigger: GCAGTCTGTATGCAGCACAGCTGATCTTGAGGTAAAAGCACCCCAAATGTTGGGATTACAATATTCCTCTCTTACCAAACTGTCATTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGGTCTGCGGCAGGTTTGCATGTGGGAAAGGGAACCTAACAAACACTGGTTGTGTTATTTTCCATTCTaGAATCTAGCAATGTCACAC | + |
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Preference number: 2 (lower is better) Translates to: EGLRQVCMWEREPNKHWLCYFPF*NLAMSH Trigger: GTGTGACATTGCTAGATTCCAGAATGGAAAATAACA...CAACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAACCTGCCGCAGACCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR-3UTR TCA 90 bp | GGGAAAGGGAACCTAACAAACACTGGTTGTTCAGTGGAGGCCATATTATGTCACCAAAATCATAATTTCTaGGAGGTCATTTTCCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: GKGNLTNTGCSVEAILCHQNHNF*EVIFQS Trigger: GCTCTGGAAAATGACCTCTCAGAAATTATGATTTTG...GTGACATAATATGGCCTCCACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGAAATTCCTTTCGTAGTCATTCCCTTGTATCTGGAAAACTTTAATGTACCTAACACCTCTCCTGTGTaGGTCTGTTTGTCAATTAAT | + |
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Preference number: 2 (lower is better) Translates to: PEIPFVVIPLYLENFNVPNTSPV*VCLSIN Trigger: ATTAATTGACAAACAGACGCACACAGGAGAGGTGTT...AGGTACATTAAAGTTTTCCAGATACAAGGGAATGACTACGAAAGGAATTTCAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR GCA 72 bp | CACAGACACAGGGACCCAGAGGGTCTGCGGCAGGTTTaGATGTGGGAAAGGGAACCTAACAAACACTGGTTG | + |
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Preference number: 3 (lower is better) Translates to: HRHRDPEGLRQV*MWEREPNKHWL Trigger: CAACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAACCTGCCGCAGACCCTCTGGGTCCCTGTGTCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR CCA 72 bp | CACAGGGACCCAGAGGGTCTGCGGCAGGTTTGCATGTaGGAAAGGGAACCTAACAAACACTGGTTGTTCAGT | + |
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Preference number: 3 (lower is better) Translates to: HRDPEGLRQVCM*EREPNKHWLFS Trigger: ACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAACCTGCCGCAGACCCTCTGGGTCCCTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR GCA 72 bp | GTGGTGAACTTGCTAGTCTCACTGTCATCTTCACTCTaGCTTATTAGCTCACCTCAGATGAGGGGCATTTCC | + |
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Preference number: 3 (lower is better) Translates to: VVNLLVSLSSSL*LISSPQMRGIS Trigger: GGAAATGCCCCTCATCTGAGGTGAGCTAATAAGGCAGAGTGAAGATGACAGTGAGACTAGCAAGTTCACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR-3UTR CAA 90 bp | TTTGCATGTGGGAAAGGGAACCTAACAAACACTGGTTGTTCAGTGGAGGCCATAAGCAATGTCACACAGTaGATGACCAAGTCTGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: FACGKGNLTNTGCSVEAISNVTQ*MTKSAV Trigger: CACAGCAGACTTGGTCATCAACTGTGTGACATTGCT...TATGGCCTCCACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR TCA 72 bp | TGTCATCTTCACTCTGCCTTATTAGCTCACCTCAGATaGGGGGCATTTCCTCATCTCCACCTAACCTGTTGT | + |
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Preference number: 3 (lower is better) Translates to: CHLHSALLAHLR*GAFPHLHLTCC Trigger: ACAACAGGTTAGGTGGAGATGAGGAAATGCCCCTCATCTGAGGTGAGCTAATAAGGCAGAGTGAAGATGACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR-3UTR CAA 90 bp | GGGAAAGGGAACCTAACAAACACTGGTTGTTCAGTGGAGGCCATATTATGTCACTCTCCACCTAACCTGTaGTTTTACATGCTCTGCCTT | + |
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Preference number: 3 (lower is better) Translates to: GKGNLTNTGCSVEAILCHSPPNL*FYMLCL Trigger: AAGGCAGAGCATGTAAAACAACAGGTTAGGTGGAGA...GTGACATAATATGGCCTCCACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR TCA 72 bp | ATCTATGATCAAGGTTTTAACCCACCAATGAGCCAGTaGGCCTTGGGCTACAGCATGAGTGTAAACAGAACC | + |
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Preference number: 3 (lower is better) Translates to: IYDQGFNPPMSQ*ALGYSMSVNRT Trigger: GGTTCTGTTTACACTCATGCTGTAGCCCAAGGCTCACTGGCTCATTGGTGGGTTAAAACCTTGATCATAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR CCA 72 bp | AGTTTGGTAAGAGAGGAATATTGTAATCCCAACATTTaGGGTGCTTTTACCTCAAGATCAGCTGTGCTGCAT | + |
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Preference number: 3 (lower is better) Translates to: SLVREEYCNPNI*GAFTSRSAVLH Trigger: ATGCAGCACAGCTGATCTTGAGGTAAAAGCACCCCAAATGTTGGGATTACAATATTCCTCTCTTACCAAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| 3UTR TCA 72 bp | TTCCCTTGTATCTGGAAAACTTTAATGTACCTTGCCTaGTGTGACTTGCAATCCCTGGTATTCTCTGTACTA | + |
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Preference number: 3 (lower is better) Translates to: FPCIWKTLMYLA*CDLQSLVFSVL Trigger: TAGTACAGAGAATACCAGGGATTGCAAGTCACATCAGGCAAGGTACATTAAAGTTTTCCAGATACAAGGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR GCA 90 bp | CAAACACTGGTTGTTCAGTGGAGGCCATATTATGTCACTGGGAGTGGAAAGCCCAGGACACGCTTGTGGTaGTTATACAGATTGAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: QTLVVQWRPYYVTGSGKPRTRLW*LYRLRA Trigger: GGCTCTCAATCTGTATAAGCACCACAAGCGTGTCCT...GGGCTTTCCACTCCCAGTGACATAATATGGCCTCCACTGAACAACCAGTGTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR TCA 90 bp | GGGAAAGGGAACCTAACAAACACTGGTTGTTCAGTGGAGGCCATATTATGTCACCAGCCCATGAGACTCTaGAAAATAACATCACGAAGA | + |
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Preference number: 4 (lower is better) Translates to: GKGNLTNTGCSVEAILCHQPMRL*KITSRR Trigger: TCTTCGTGATGTTATTTTTCAGAGTCTCATGGGCTG...GTGACATAATATGGCCTCCACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR TCA 90 bp | GGTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTGGTGCTTATACAGATTaGGAGCCATGGACCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: GPHIYNSLWESNIQCIHLGAYTD*EPWTHC Trigger: GCAGTGGGTCCATGGCTCTCAATCTGTATAAGCACC...AAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| 3UTR CAA 72 bp | ACAGTTGATGACCAAGTCTGCTGTGTTGTGGTGAACTaGCTAGTCTCACTGTCATCTTCACTCTGCCTTATT | + |
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Preference number: 4 (lower is better) Translates to: TVDDQVCCVVVN*LVSLSSSLCLI Trigger: AATAAGGCAGAGTGAAGATGACAGTGAGACTAGCAAGTTCACCACAACACAGCAGACTTGGTCATCAACTGT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR TCA 90 bp | ACTTTCCACTTCCCTAGAAATCTTCAACAGGTCTTAAGACTGTTCAGTGCCAGACTTGATGGTGTGTCTTaGTTGGAGCATATAACAGTG | + |
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Preference number: 4 (lower is better) Translates to: TFHFPRNLQQVLRLFSARLDGVS*LEHITV Trigger: CACTGTTATATGCTCCAATCAAGACACACCATCAAG...TCTGGCACTGAACAGTCTTAAGACCTGTTGAAGATTTCTAGGGAAGTGGAAAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR GCA 90 bp | CCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTAGCGCCCCTTGCCATCCTTaGCAGAAAAACCACAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: PTSTIHYGKATYNVYTFSAPCHP*QKNHSF Trigger: AAAGCTGTGGTTTTTCTGGCAAGGATGGCAAGGGGC...GCTAAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR GCA 90 bp | GTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTGCCCCTTGCCATCCTTaGCAGAAAAACCACAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: VPTSTIHYGKATYNVYTFAPCHP*QKNHSF Trigger: AAAGCTGTGGTTTTTCTGGCAAGGATGGCAAGGGGC...AAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR GCA 90 bp | AATCCCAACATTTGGGGTGCTTTTACCTCAAGATCAGCTGTGCTGCATACAGACGGGAATAATTTGGCATaGTGTTTGTGGTTTAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: NPNIWGAFTSRSAVLHTDGNNLA*CLWFKL Trigger: AAGCTTAAACCACAAACAGCATGCCAAATTATTCCC...GTCTGTATGCAGCACAGCTGATCTTGAGGTAAAAGCACCCCAAATGTTGGGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR GCA 90 bp | GGTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTAGGACACGCTTGTGGTaGTTATACAGATTGAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GPHIYNSLWESNIQCIHLRTRLW*LYRLRA Trigger: GGCTCTCAATCTGTATAAGCACCACAAGCGTGTCCT...AAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CCA 90 bp | GGAGTGGAAAGCCCAGTGTTTATAATCTATGATCAAGGTTTTAACCCACCAATGTGTAGCTCTGATTTCTaGAGGGGAGTTGTTCGCAAA | + |
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Preference number: 4 (lower is better) Translates to: GVESPVFIIYDQGFNPPMCSSDF*RGVVRK Trigger: TTTGCGAACAACTCCCCTCCAGAAATCAGAGCTACA...CATTGGTGGGTTAAAACCTTGATCATAGATTATAAACACTGGGCTTTCCACTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR CCA 90 bp | TTGTTCAGTGGAGGCCATATTATGTCACTGGGAGTGGAAAGCCCAGTGTTTATATTAGAAAATGCCAAGTaGATTACAATAAGGTCGACA | + |
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Preference number: 4 (lower is better) Translates to: LFSGGHIMSLGVESPVFILENAK*ITIRST Trigger: TGTCGACCTTATTGTAATCCACTTGGCATTTTCTAA...TATAAACACTGGGCTTTCCACTCCCAGTGACATAATATGGCCTCCACTGAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR TCA 90 bp | GTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTCTTGATGGTGTGTCTTaGTTGGAGCATATAACAGTG | + |
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Preference number: 4 (lower is better) Translates to: VPTSTIHYGKATYNVYTFLDGVS*LEHITV Trigger: CACTGTTATATGCTCCAATCAAGACACACCATCAAG...AAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR GCA 90 bp | TCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTAGTGGCCAATGAATGTTaGAGCAACAGACCTGTTCAA | + |
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Preference number: 4 (lower is better) Translates to: SPHLQFIMGKQHTMYTPLVANEC*SNRPVQ Trigger: TTGAACAGGTCTGTTGCTGCAACATTCATTGGCCAC...TAAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CCA 90 bp | TCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTATGTAGCTCTGATTTCTaGAGGGGAGTTGTTCGCAAA | + |
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Preference number: 4 (lower is better) Translates to: SPHLQFIMGKQHTMYTPLCSSDF*RGVVRK Trigger: TTTGCGAACAACTCCCCTCCAGAAATCAGAGCTACA...TAAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR TCA 90 bp | TCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTACAGCCCATGAGACTCTaGAAAATAACATCACGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SPHLQFIMGKQHTMYTPLQPMRL*KITSRR Trigger: TCTTCGTGATGTTATTTTTCAGAGTCTCATGGGCTG...TAAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR GCA 90 bp | GTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTGGGAATAATTTGGCATaGTGTTTGTGGTTTAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: VPTSTIHYGKATYNVYTFGNNLA*CLWFKL Trigger: AAGCTTAAACCACAAACAGCATGCCAAATTATTCCC...AAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CCA 90 bp | CCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTAGCTTAGAAAATGCCAAGTaGATTACAATAAGGTCGACA | + |
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Preference number: 4 (lower is better) Translates to: PTSTIHYGKATYNVYTFSLENAK*ITIRST Trigger: TGTCGACCTTATTGTAATCCACTTGGCATTTTCTAA...GCTAAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | TTTGCATGTGGGAAAGGGAACCTAACAAACACTGGTTGTTCAGTGGAGGCCATAGGCCCCTTGCCATCCTaGCCAGAAAAACCACAGCTT | + |
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Preference number: 5 (lower is better) Translates to: FACGKGNLTNTGCSVEAIGPLPS*PEKPQL Trigger: AAGCTGTGGTTTTTCTGGCAAGGATGGCAAGGGGCC...TATGGCCTCCACTGAACAACCAGTGTTTGTTAGGTTCCCTTTCCCACATGCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | CAAACACTGGTTGTTCAGTGGAGGCCATATTATGTCACTGGGAGTGGAAAGCCCTGGTGCTTATACAGATaGAGAGCCATGGACCCACTG | + |
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Preference number: 5 (lower is better) Translates to: QTLVVQWRPYYVTGSGKPWCLYR*RAMDPL Trigger: CAGTGGGTCCATGGCTCTCAATCTGTATAAGCACCA...GGGCTTTCCACTCCCAGTGACATAATATGGCCTCCACTGAACAACCAGTGTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | ATTTGGGGTGCTTTTACCTCAAGATCAGCTGTGCTGCATACAGACTGCAAGTTCATTTCTGGAGGGGAGTaGTTCGCAAACCTGGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: IWGAFTSRSAVLHTDCKFISGGE*FANLEL Trigger: CAGCTCCAGGTTTGCGAACAACTCCCCTCCAGAAAT...GAACTTGCAGTCTGTATGCAGCACAGCTGATCTTGAGGTAAAAGCACCCCAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | CCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTAGCGGCCCCTTGCCATCCTaGCCAGAAAAACCACAGCTT | + |
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Preference number: 5 (lower is better) Translates to: PTSTIHYGKATYNVYTFSGPLPS*PEKPQL Trigger: AAGCTGTGGTTTTTCTGGCAAGGATGGCAAGGGGCC...GCTAAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS TCA 90 bp | ACGAAGAGTCATGAGAGAGAGGAAAATCCACTTGATGGTGTGTCTTaGTTGGAGCATATAACAGTGGCCAATGAATGTTGCAGCAACAGA | + |
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Preference number: 5 (lower is better) Translates to: TKSHEREENPLDGVS*LEHITVANECCSNR Trigger: TCTGTTGCTGCAACATTCATTGGCCACTGTTATATGCTCCAATCAAGACACACCATCAAGTGGATTTTCCTCTCTCTCATGACTCTTCGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | GTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTATTTCTGGAGGGGAGTaGTTCGCAAACCTGGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: VPTSTIHYGKATYNVYTFISGGE*FANLEL Trigger: CAGCTCCAGGTTTGCGAACAACTCCCCTCCAGAAAT...AAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | GTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTTGGTGCTTATACAGATaGAGAGCCATGGACCCACTG | + |
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Preference number: 5 (lower is better) Translates to: VPTSTIHYGKATYNVYTFWCLYR*RAMDPL Trigger: CAGTGGGTCCATGGCTCTCAATCTGTATAAGCACCA...AAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | GTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTGAGAGGAAAATCCACTaGATGGTGTGTCTTGATTGG | + |
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Preference number: 5 (lower is better) Translates to: VPTSTIHYGKATYNVYTFERKIH*MVCLDW Trigger: CCAATCAAGACACACCATCAAGTGGATTTTCCTCTC...AAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | GAAAGCCCAGTGTTTATAATCTATGATCAAGGTTTTAACCCACCAATGAGCCAGACTGTGGCTATATCTTaGATCCCAGTTGTACAAATA | + |
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Preference number: 5 (lower is better) Translates to: ESPVFIIYDQGFNPPMSQTVAIS*IPVVQI Trigger: TATTTGTACAACTGGGATCAAAGATATAGCCACAGT...CTGGCTCATTGGTGGGTTAAAACCTTGATCATAGATTATAAACACTGGGCTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228092.2 |
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| CDS-3UTR CAA 90 bp | GTCCCCACATCTACAATTCATTATGGGAAAGCAACATACAATGTATACACCTTTACTGTGGCTATATCTTaGATCCCAGTTGTACAAATA | + |
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Preference number: 5 (lower is better) Translates to: VPTSTIHYGKATYNVYTFTVAIS*IPVVQI Trigger: TATTTGTACAACTGGGATCAAAGATATAGCCACAGT...AAAGGTGTATACATTGTATGTTGCTTTCCCATAATGAATTGTAGATGTGGGGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS TCA 72 bp | CATGAGAGAGAGGAAAATCCACTTGATGGTGTGTCTTaGTTGGAGCATATAACAGTGGCCAATGAATGTTGC | + |
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Preference number: 6 (lower is better) Translates to: HEREENPLDGVS*LEHITVANECC Trigger: GCAACATTCATTGGCCACTGTTATATGCTCCAATCAAGACACACCATCAAGTGGATTTTCCTCTCTCTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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| CDS CAA 72 bp | AAAGACAAGAATAAAGGGAATAATTTGGCATGCTGTTaGTGGTTTAAGCTTTGTCCAAAGGGAAGTTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: KDKNKGNNLACC*WFKLCPKGSSG Trigger: CCCAGAACTTCCCTTTGGACAAAGCTTAAACCACAAACAGCATGCCAAATTATTCCCTTTATTCTTGTCTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072972.5 ENSMUST00000228092.2 |
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