Pregenerated sensors for VMN1R212 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071490

Ensembl transcript IDs: ENSMUST00000095960.5

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AGTCAGAACTCCATCCCTGTGAATCAGCACCAGGGGGCTAAAAGTTaGATAACCAAGGGTCACAAATTCTTGAATGTTTATTATCAAGGA	+
Preference number: 5 (lower is better) Translates to: SQNSIPVNQHQGAKS*ITKGHKFLNVYYQG Trigger: TCCTTGATAATAAACATTCAAGAATTTGTGACCCTTGGTTATGCAACTTTTAGCCCCCTGGTGCTGATTCACAGGGATGGAGTTCTGACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS CCA 72 bp	GATGGTGTTTGTAGAGAAGAAATACCATGTAGCCACTaGCCCCTCCCATGGCACCCTGAAACACTGCATCCC	+
Preference number: 6 (lower is better) Translates to: DGVCREEIPCSH*PLPWHPETLHP Trigger: GGGATGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCTACAAACACCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS GCA 72 bp	TCCATCCCTGTGAATCAGCACCAGGGGGCTAAAAGTTaGATAACCAAGGGTCACAAATTCTTGAATGTTTAT	+
Preference number: 6 (lower is better) Translates to: SIPVNQHQGAKS*ITKGHKFLNVY Trigger: ATAAACATTCAAGAATTTGTGACCCTTGGTTATGCAACTTTTAGCCCCCTGGTGCTGATTCACAGGGATGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS CAA 72 bp	GTAGAGAAGCTTGGAGTTCTGAAGGTAGAGGACATGTaGATGGTGTTTGTAGAGAAGAAATACCATGTAGCC	+
Preference number: 6 (lower is better) Translates to: VEKLGVLKVEDM*MVFVEKKYHVA Trigger: GGCTACATGGTATTTCTTCTCTACAAACACCATCAACATGTCCTCTACCTTCAGAACTCCAAGCTTCTCTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS CAA 90 bp	CTTGAGTCACCAGGAAAAGTGAGAATAAATAGATTCTTAACCTTCTaGGTGGGATCTGATCTTACCCATAATACTGAGGAACTGAGAGTC	+
Preference number: 6 (lower is better) Translates to: LESPGKVRINRFLTF*VGSDLTHNTEELRV Trigger: GACTCTCAGTTCCTCAGTATTATGGGTAAGATCAGATCCCACCAAGAAGGTTAAGAATCTATTTATTCTCACTTTTCCTGGTGACTCAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS CAA 72 bp	CCAGGAAAAGTGAGAATAAATAGATTCTTAACCTTCTaGGTGGGATCTGATCTTACCCATAATACTGAGGAA	+
Preference number: 6 (lower is better) Translates to: PGKVRINRFLTF*VGSDLTHNTEE Trigger: TTCCTCAGTATTATGGGTAAGATCAGATCCCACCAAGAAGGTTAAGAATCTATTTATTCTCACTTTTCCTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS CAA 90 bp	TTTGTATTTGTGGTAGAATGGATTAGGTTCACACTTATTGAAGCATaGAGTACCCAAAAGAATGACAAGAATGGAAGGATGTGCCATACA	+
Preference number: 6 (lower is better) Translates to: FVFVVEWIRFTLIEA*STQKNDKNGRMCHT Trigger: TGTATGGCACATCCTTCCATTCTTGTCATTCTTTTGGGTACTCAATGCTTCAATAAGTGTGAACCTAATCCATTCTACCACAAATACAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS CCA 72 bp	AGCTGTGATACATTCAGTTTTGTATTTGTGGTAGAATaGATTAGGTTCACACTTATTGAAGCATTGAGTACC	+
Preference number: 6 (lower is better) Translates to: SCDTFSFVFVVE*IRFTLIEALST Trigger: GGTACTCAATGCTTCAATAAGTGTGAACCTAATCCATTCTACCACAAATACAAAACTGAATGTATCACAGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095960.5
CDS TCA 72 bp	CATAAAATAACAATCGCTCTCATCACTCCTAAGCTGTaGTACATTCAGTTTTGTATTTGTGGTAGAATGGAT	+
Preference number: 6 (lower is better) Translates to: HKITIALITPKL*YIQFCICGRMD Trigger: ATCCATTCTACCACAAATACAAAACTGAATGTATCACAGCTTAGGAGTGATGAGAGCGATTGTTATTTTATG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095960.5

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