Pregenerated sensors for VMN1R210 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000061296Ensembl transcript IDs: ENSMUST00000072044.2, ENSMUST00000226180.2, ENSMUST00000226294.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAACTCCTTTGTGCTACAGAGCTGCATGGAGCTATGAAGAGCACCTaGGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTC | + |
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Preference number: 1 (lower is better) Translates to: ELLCATELHGAMKST*AVTKGSCKVGLLGF Trigger: GAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCTCTTCATAGCTCCATGCAGCTCTGTAGCACAAAGGAGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR CCA 90 bp | GTAGAGTCAGATCCTTCCAGAACTCCTTTGTGCTACAGAGCTGCATaGAGCTATGAAGAGCACCTGGGCAGTAACAAAGGGCAGCTGCAA | + |
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Preference number: 1 (lower is better) Translates to: VESDPSRTPLCYRAA*SYEEHLGSNKGQLQ Trigger: TTGCAGCTGCCCTTTGTTACTGCCCAGGTGCTCTTCATAGCTCCATGCAGCTCTGTAGCACAAAGGAGTTCTGGAAGGATCTGACTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR GCA 90 bp | CTGCATGGAGCTATGAAGAGCACCTGGGCAGTAACAAAGGGCAGCTaGAAAGTAGGCTTGCTTGGCTTCAGTCACACTTATTGGTTCATT | + |
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Preference number: 1 (lower is better) Translates to: LHGAMKSTWAVTKGS*KVGLLGFSHTYWFI Trigger: AATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCTCTTCATAGCTCCATGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR CCA 90 bp | GAGCACCTGGGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTTGCTTaGCTTCAGTCACACTTATTGGTTCATTTTGAAAGATACAAAAAC | + |
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Preference number: 1 (lower is better) Translates to: EHLGSNKGQLQSRLA*LQSHLLVHFERYKN Trigger: GTTTTTGTATCTTTCAAAATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR TCA 90 bp | GCTCAAGCCTCTTCCGGCACAGAGTATGTGCTACACAGTTATAAATaGAGACAAACTATTCATACACAAATCATTAATAAACGTATAGGA | + |
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Preference number: 1 (lower is better) Translates to: AQASSGTEYVLHSYK*RQTIHTQIINKRIG Trigger: TCCTATACGTTTATTAATGATTTGTGTATGAATAGTTTGTCTTCATTTATAACTGTGTAGCACATACTCTGTGCCGGAAGAGGCTTGAGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR TCA 90 bp | AGCACCTGGGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTCAGTACTTCAGTCAGTCACTaGATGTGTGATGATCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: STWAVTKGSCKVGLLGFSTSVSH*MCDDLL Trigger: GAGCAGATCATCACACATTCAGTGACTGACTGAAGT...ACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR CAA 90 bp | ATGAAGAGCACCTGGGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTaGCTTGGCTTCAGTCACACTTATTGGTTCATTTTGAAAGATACA | + |
|
Preference number: 2 (lower is better) Translates to: MKSTWAVTKGSCKVG*LGFSHTYWFILKDT Trigger: TGTATCTTTCAAAATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCTCTTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR CCA 90 bp | CATCATTATAAAGTAGATCCAGGCATCTCCCAGTGTTTCCTGTCAGATATAACATGCTGGAGCTTTGTCTaGTCTTCCAGAGAAGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: HHYKVDPGISQCFLSDITCWSFV*SSREAR Trigger: CCTGGCTTCTCTGGAAGACCAGACAAAGCTCCAGCA...TGTTATATCTGACAGGAAACACTGGGAGATGCCTGGATCTACTTTATAATGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR CCA 90 bp | TATACCAATGTTTCAGAATGTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTGCTATGAAGAGCACCTaGGCAGTAACAAAGGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: YTNVSECVHQILRNLSGSAMKST*AVTKGS Trigger: GCTGCCCTTTGTTACTGCCCAGGTGCTCTTCATAGC...AGAACCTGACAAGTTTCTAAGAATCTGATGGACACATTCTGAAACATTGGTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR TCA 90 bp | CATCATTATAAAGTAGATCCAGGCATCTCCCAGTGTTTCCTGTCAGATATAACAACTTCAGTCAGTCACTaGATGTGTGATGATCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: HHYKVDPGISQCFLSDITTSVSH*MCDDLL Trigger: GAGCAGATCATCACACATTCAGTGACTGACTGAAGT...TGTTATATCTGACAGGAAACACTGGGAGATGCCTGGATCTACTTTATAATGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTCAGTCACACTTATTGGTTCATTTATATCACTGTAATTTaGCAAGGTCATTCTCTCTCA | + |
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Preference number: 2 (lower is better) Translates to: KGSCKVGLLGFSHTYWFIYITVI*QGHSLS Trigger: TGAGAGAGAATGACCTTGGCAAATTACAGTGATATA...AATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR CCA 90 bp | CATCATTATAAAGTAGATCCAGGCATCTCCCAGTGTTTCCTGTCAGATATAACACCATTTTCTCAATGCTaGAGCTTTGTCTGGTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: HHYKVDPGISQCFLSDITPFSQC*SFVWSS Trigger: GGAAGACCAGACAAAGCTCCAGCATTGAGAAAATGG...TGTTATATCTGACAGGAAACACTGGGAGATGCCTGGATCTACTTTATAATGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR GCA 90 bp | TATACCAATGTTTCAGAATGTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTGACCCATTTTCTCAATaGTGGAGCTTTGTCTGGTCT | + |
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Preference number: 2 (lower is better) Translates to: YTNVSECVHQILRNLSGSDPFSQ*WSFVWS Trigger: AGACCAGACAAAGCTCCAGCATTGAGAAAATGGGTC...AGAACCTGACAAGTTTCTAAGAATCTGATGGACACATTCTGAAACATTGGTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR GCA 90 bp | CCTCTTCCGGCACAGAGTATGTGCTACACAGTTATAAATGAAGACAAACTATTCAATGTATGCTTAAACTaGTTTGTGGGGTTTGTCTTA | + |
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Preference number: 2 (lower is better) Translates to: PLPAQSMCYTVINEDKLFNVCLN*FVGFVL Trigger: TAAGACAAACCCCACAAAGCAGTTTAAGCATACATT...GAATAGTTTGTCTTCATTTATAACTGTGTAGCACATACTCTGTGCCGGAAGAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR GCA 90 bp | CCAGAGAAGCCAGGTTCATTTCTAGCAATCAAATATTGGTTTAGAACAATCCCTCTGAAGATAAATGTATaGTTAAACTGCTTTGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: PEKPGSFLAIKYWFRTIPLKINV*LNCFVG Trigger: CCCCACAAAGCAGTTTAAGCATACATTTATCTTCAG...AGGGATTGTTCTAAACCAATATTTGATTGCTAGAAATGAACCTGGCTTCTCTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR GCA 90 bp | GTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACTGTATGGATCCAATTTCCGGCACAGAGTATGTaGTACACAGTTATAAATGAA | + |
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Preference number: 2 (lower is better) Translates to: VSIRFLETCQVLTVWIQFPAQSM*YTVINE Trigger: TTCATTTATAACTGTGTAGCACATACTCTGTGCCGG...AAATTGGATCCATACAGTAAGAACCTGACAAGTTTCTAAGAATCTGATGGACAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR GCA 90 bp | CATCATTATAAAGTAGATCCAGGCATCTCCCAGTGTTTCCTGTCAGATATAACAAATGTATGCTTAAACTaGTTTGTGGGGTTTGTCTTA | + |
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Preference number: 2 (lower is better) Translates to: HHYKVDPGISQCFLSDITNVCLN*FVGFVL Trigger: TAAGACAAACCCCACAAAGCAGTTTAAGCATACATT...TGTTATATCTGACAGGAAACACTGGGAGATGCCTGGATCTACTTTATAATGATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACTGTATGGATCCAATTTTTGAACTTCTATGACTaGTACATTTGGCTTCTATTG | + |
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Preference number: 2 (lower is better) Translates to: VSIRFLETCQVLTVWIQFLNFYD*YIWLLL Trigger: CAATAGAAGCCAAATGTACCAGTCATAGAAGTTCAA...AAATTGGATCCATACAGTAAGAACCTGACAAGTTTCTAAGAATCTGATGGACAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR GCA 72 bp | GCTATGAAGAGCACCTGGGCAGTAACAAAGGGCAGCTaGAAAGTAGGCTTGCTTGGCTTCAGTCACACTTAT | + |
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Preference number: 3 (lower is better) Translates to: AMKSTWAVTKGS*KVGLLGFSHTY Trigger: ATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCTCTTCATAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR GCA 72 bp | ATTTATGTAGAGTCAGATCCTTCCAGAACTCCTTTGTaGTACAGAGCTGCATGGAGCTATGAAGAGCACCTG | + |
|
Preference number: 3 (lower is better) Translates to: IYVESDPSRTPL*YRAAWSYEEHL Trigger: CAGGTGCTCTTCATAGCTCCATGCAGCTCTGTAGCACAAAGGAGTTCTGGAAGGATCTGACTCTACATAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR CCA 72 bp | TTGGTAGACCCATTTTCTCAATGCTGGAGCTTTGTCTaGTCTTCCAGAGAAGCCAGGTTCATTTCTAGCAAT | + |
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Preference number: 3 (lower is better) Translates to: LVDPFSQCWSFV*SSREARFISSN Trigger: ATTGCTAGAAATGAACCTGGCTTCTCTGGAAGACCAGACAAAGCTCCAGCATTGAGAAAATGGGTCTACCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR CCA 72 bp | TTTTACAAATCCTTGGTAGACCCATTTTCTCAATGCTaGAGCTTTGTCTGGTCTTCCAGAGAAGCCAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: FYKSLVDPFSQC*SFVWSSREARF Trigger: GAACCTGGCTTCTCTGGAAGACCAGACAAAGCTCCAGCATTGAGAAAATGGGTCTACCAAGGATTTGTAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR CCA 72 bp | GGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTTGCTTaGCTTCAGTCACACTTATTGGTTCATTTTGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: GSNKGQLQSRLA*LQSHLLVHFER Trigger: TCTTTCAAAATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR CAA 90 bp | CCTCTTCCGGCACAGAGTATGTGCTACACAGTTATAAATGAAGACAAACTATTCACTGCTTTGTGGGGTTaGTCTTACACACAGTATTGT | + |
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Preference number: 3 (lower is better) Translates to: PLPAQSMCYTVINEDKLFTALWG*SYTQYC Trigger: ACAATACTGTGTGTAAGACAAACCCCACAAAGCAGT...GAATAGTTTGTCTTCATTTATAACTGTGTAGCACATACTCTGTGCCGGAAGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR CAA 90 bp | TATACCAATGTTTCAGAATGTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTCTCAATGCTGGAGCTTaGTCTGGTCTTCCAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: YTNVSECVHQILRNLSGSLNAGA*SGLPEK Trigger: CTTCTCTGGAAGACCAGACAAAGCTCCAGCATTGAG...AGAACCTGACAAGTTTCTAAGAATCTGATGGACACATTCTGAAACATTGGTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR GCA 72 bp | GATGATCTGCTCAAGCCTCTTCCGGCACAGAGTATGTaGTACACAGTTATAAATGAAGACAAACTATTCATA | + |
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Preference number: 3 (lower is better) Translates to: DDLLKPLPAQSM*YTVINEDKLFI Trigger: TATGAATAGTTTGTCTTCATTTATAACTGTGTAGCACATACTCTGTGCCGGAAGAGGCTTGAGCAGATCATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR-3UTR CAA 90 bp | CATCATTATAAAGTAGATCCAGGCATCTCCCAGTGTTTCCTGTCAGATATAACACTATATCACTGTAATTaGCCAAGGTCATTCTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: HHYKVDPGISQCFLSDITLYHCN*PRSFSL Trigger: GAGAGAGAATGACCTTGGCAAATTACAGTGATATAG...TGTTATATCTGACAGGAAACACTGGGAGATGCCTGGATCTACTTTATAATGATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR TCA 90 bp | AGCACCTGGGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTCAGTCCTCCCATAGCACCCTaGAAAACTGCATCTCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: STWAVTKGSCKVGLLGFSPPIAP*KTASLR Trigger: CCTGAGAGATGCAGTTTTTCAGGGTGCTATGGGAGG...ACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CCA 90 bp | GGCAAATGGAGAATGAGATATCTATATCACTGTAATTTGCCAAGGTCATTCTCTGACTGCTGGTGCAGATaGAGAGGCCCCGTGCCACCC | + |
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Preference number: 4 (lower is better) Translates to: GKWRMRYLYHCNLPRSFSDCWCR*RGPVPP Trigger: GGGTGGCACGGGGCCTCTCCATCTGCACCAGCAGTC...AGAGAATGACCTTGGCAAATTACAGTGATATAGATATCTCATTCTCCATTTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CCA 90 bp | TTGTGGGGTTTGTCTTACACACAGTATTGTAGAACAGAGATTTCCTTGACATTTGACTGCTGGTGCAGATaGAGAGGCCCCGTGCCACCC | + |
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Preference number: 4 (lower is better) Translates to: LWGLSYTQYCRTEISLTFDCWCR*RGPVPP Trigger: GGGTGGCACGGGGCCTCTCCATCTGCACCAGCAGTC...AAATGTCAAGGAAATCTCTGTTCTACAATACTGTGTGTAAGACAAACCCCACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR GCA 90 bp | GGTCATTCTCTCTCAGCTCCAGGCTGTGAAACAATAGGAAGAGTGTCTGAAGATAGCACCCTGAAAAACTaGATCTCTCAGGACCATGAG | + |
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Preference number: 4 (lower is better) Translates to: GHSLSAPGCETIGRVSEDSTLKN*ISQDHE Trigger: CTCATGGTCCTGAGAGATGCAGTTTTTCAGGGTGCT...ATCTTCAGACACTCTTCCTATTGTTTCACAGCCTGGAGCTGAGAGAGAATGACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| 3UTR CAA 72 bp | ACCTGGGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTaGCTTGGCTTCAGTCACACTTATTGGTTCATTTTG | + |
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Preference number: 4 (lower is better) Translates to: TWAVTKGSCKVG*LGFSHTYWFIL Trigger: CAAAATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR TCA 90 bp | AAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTCAGTCACACTTATTGGTTCATTGGCTTCCCCACCAACTaGACATATAATTCACAGAAA | + |
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Preference number: 4 (lower is better) Translates to: KGSCKVGLLGFSHTYWFIGFPTN*TYNSQK Trigger: TTTCTGTGAATTATATGTTCAGTTGGTGGGGAAGCC...AATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR TCA 90 bp | AAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTCAGTCACACTTATTGGTTCATTGAGTATCCAAAAGAATaGGAAGAATGGAAGGATGTG | + |
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Preference number: 4 (lower is better) Translates to: KGSCKVGLLGFSHTYWFIEYPKE*EEWKDV Trigger: CACATCCTTCCATTCTTCTCATTCTTTTGGATACTC...AATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR GCA 90 bp | CCTCTTCCGGCACAGAGTATGTGCTACACAGTTATAAATGAAGACAAACTATTCAGCACCCTGAAAAACTaGATCTCTCAGGACCATGAG | + |
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Preference number: 4 (lower is better) Translates to: PLPAQSMCYTVINEDKLFSTLKN*ISQDHE Trigger: CTCATGGTCCTGAGAGATGCAGTTTTTCAGGGTGCT...GAATAGTTTGTCTTCATTTATAACTGTGTAGCACATACTCTGTGCCGGAAGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CCA 90 bp | AAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTCAGTCACACTTATTGGTTCATTTTTGTAAAAGCCATGTaGATGAGAATAAGGTGTATG | + |
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Preference number: 4 (lower is better) Translates to: KGSCKVGLLGFSHTYWFIFVKAM*MRIRCM Trigger: CATACACCTTATTCTCATCCACATGGCTTTTACAAA...AATGAACCAATAAGTGTGACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCGGCACAGAGTATGTGCTACACAGTTATAAATGAAGACAAACTATTCGAGTATCCAAAAGAATaGGAAGAATGGAAGGATGTG | + |
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Preference number: 4 (lower is better) Translates to: PLPAQSMCYTVINEDKLFEYPKE*EEWKDV Trigger: CACATCCTTCCATTCTTCTCATTCTTTTGGATACTC...GAATAGTTTGTCTTCATTTATAACTGTGTAGCACATACTCTGTGCCGGAAGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR TCA 90 bp | GTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACTGTATGGATCCAATTTGGCTTCCCCACCAACTaGACATATAATTCACAGAAA | + |
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Preference number: 4 (lower is better) Translates to: VSIRFLETCQVLTVWIQFGFPTN*TYNSQK Trigger: TTTCTGTGAATTATATGTTCAGTTGGTGGGGAAGCC...AAATTGGATCCATACAGTAAGAACCTGACAAGTTTCTAAGAATCTGATGGACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR TCA 90 bp | TTGTGGGGTTTGTCTTACACACAGTATTGTAGAACAGAGATTTCCTTGACATTTCTCAATTTCTCCCACTaGGCATGCCAAAATTTAACC | + |
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Preference number: 4 (lower is better) Translates to: LWGLSYTQYCRTEISLTFLNFSH*ACQNLT Trigger: GGTTAAATTTTGGCATGCTCAGTGGGAGAAATTGAG...AAATGTCAAGGAAATCTCTGTTCTACAATACTGTGTGTAAGACAAACCCCACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR TCA 90 bp | GCATTGAACTTCTATGACTGGTACATTTGGCTTCTATTGACTGAATTTACAGTACTCAATTTCTCCCACTaGGCATGCCAAAATTTAACC | + |
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Preference number: 4 (lower is better) Translates to: ALNFYDWYIWLLLTEFTVLNFSH*ACQNLT Trigger: GGTTAAATTTTGGCATGCTCAGTGGGAGAAATTGAG...TACTGTAAATTCAGTCAATAGAAGCCAAATGTACCAGTCATAGAAGTTCAATGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR GCA 90 bp | GTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACTGTATGGATCCAATTTGGAAAAGGCACAATCTaGCCAGTAGAAGAAAACAAA | + |
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Preference number: 4 (lower is better) Translates to: VSIRFLETCQVLTVWIQFGKGTI*PVEENK Trigger: TTTGTTTTCTTCTACTGGGCAGATTGTGCCTTTTCC...AAATTGGATCCATACAGTAAGAACCTGACAAGTTTCTAAGAATCTGATGGACAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR GCA 90 bp | TATACCAATGTTTCAGAATGTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTGGAAAAGGCACAATCTaGCCAGTAGAAGAAAACAAA | + |
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Preference number: 4 (lower is better) Translates to: YTNVSECVHQILRNLSGSGKGTI*PVEENK Trigger: TTTGTTTTCTTCTACTGGGCAGATTGTGCCTTTTCC...AGAACCTGACAAGTTTCTAAGAATCTGATGGACACATTCTGAAACATTGGTATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CCA 90 bp | GTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACTGTATGGATCCAATTTTTTGTAAAAGCCATGTaGATGAGAATAAGGTGTATG | + |
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Preference number: 4 (lower is better) Translates to: VSIRFLETCQVLTVWIQFFVKAM*MRIRCM Trigger: CATACACCTTATTCTCATCCACATGGCTTTTACAAA...AAATTGGATCCATACAGTAAGAACCTGACAAGTTTCTAAGAATCTGATGGACAC 36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CAA 90 bp | AGCACCTGGGCAGTAACAAAGGGCAGCTGCAAAGTAGGCTTGCTTGGCTTCAGTCATGCAGACTTTGGCTaGAGCTTCCTCCATCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: STWAVTKGSCKVGLLGFSHADFG*SFLHPD Trigger: ATCTGGATGGAGGAAGCTCAAGCCAAAGTCTGCATG...ACTGAAGCCAAGCAAGCCTACTTTGCAGCTGCCCTTTGTTACTGCCCAGGTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS GCA 90 bp | ATTAAAGCATTGAGTATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCATGCAGACTTTGGCTTGAGCTTCCTCCATCCAGATCCTCTA | + |
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Preference number: 5 (lower is better) Translates to: IKALSIQKNEKNGRM*HADFGLSFLHPDPL Trigger: TAGAGGATCTGGATGGAGGAAGCTCAAGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAATGCTTTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072044.2 ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CAA 90 bp | GTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACTGTATGGATCCAATTTCATGCAGACTTTGGCTaGAGCTTCCTCCATCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: VSIRFLETCQVLTVWIQFHADFG*SFLHPD Trigger: ATCTGGATGGAGGAAGCTCAAGCCAAAGTCTGCATG...AAATTGGATCCATACAGTAAGAACCTGACAAGTTTCTAAGAATCTGATGGACAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CAA 90 bp | CCTCTTCCGGCACAGAGTATGTGCTACACAGTTATAAATGAAGACAAACTATTCTTTAGCATCAGGTTATaGTCCCTTGAAGAGATGCTT | + |
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Preference number: 5 (lower is better) Translates to: PLPAQSMCYTVINEDKLFFSIRL*SLEEML Trigger: AAGCATCTCTTCAAGGGACAATAACCTGATGCTAAA...GAATAGTTTGTCTTCATTTATAACTGTGTAGCACATACTCTGTGCCGGAAGAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS-3UTR CAA 90 bp | GCATTGAACTTCTATGACTGGTACATTTGGCTTCTATTGACTGAATTTACAGTATTTAGCATCAGGTTATaGTCCCTTGAAGAGATGCTT | + |
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Preference number: 5 (lower is better) Translates to: ALNFYDWYIWLLLTEFTVFSIRL*SLEEML Trigger: AAGCATCTCTTCAAGGGACAATAACCTGATGCTAAA...TACTGTAAATTCAGTCAATAGAAGCCAAATGTACCAGTCATAGAAGTTCAATGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS GCA 72 bp | GTAGCCACTGGCCCCTCCCATAGCACCCTGAAAAACTaGATCTCTCAGGACCATGAGAGGGAGAACAACCCA | + |
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Preference number: 6 (lower is better) Translates to: VATGPSHSTLKN*ISQDHERENNP Trigger: TGGGTTGTTCTCCCTCTCATGGTCCTGAGAGATGCAGTTTTTCAGGGTGCTATGGGAGGGGCCAGTGGCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000072044.2 ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS GCA 72 bp | TTGAGTATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCATGCAGACTTTGGCTTGAGCTTCCTCCATCCA | + |
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Preference number: 6 (lower is better) Translates to: LSIQKNEKNGRM*HADFGLSFLHP Trigger: TGGATGGAGGAAGCTCAAGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072044.2 ENSMUST00000226180.2 ENSMUST00000226294.2 |
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| CDS CAA 72 bp | AGGGCCAGAAATTCTCGAGTATTTAGCATCAGGTTATaGTCCCTTGAAGAGATGCTTATAATTAGGGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: RARNSRVFSIRL*SLEEMLIIREK Trigger: CTTTTCCCTAATTATAAGCATCTCTTCAAGGGACAATAACCTGATGCTAAATACTCGAGAATTTCTGGCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000072044.2 ENSMUST00000226180.2 ENSMUST00000226294.2 |
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