Pregenerated sensors for VMN1R21 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115343

Ensembl transcript IDs: ENSMUST00000203310.3, ENSMUST00000203488.3, ENSMUST00000226191.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCAAGGTTGCTGATGCTATaGAGATGCTTGCATTGCCTT	+
Preference number: 4 (lower is better) Translates to: SSFDFSGHQEYKHTYMISRLLML*RCLHCL Trigger: AAGGCAATGCAAGCATCTTCATAGCATCAGCAACCT...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2
CDS-3UTR TCA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCAAAGTGTCCCCACCAGTaGGAATCATCATTATATGAA	+
Preference number: 4 (lower is better) Translates to: SSFDFSGHQEYKHTYMISKCPHQ*ESSLYE Trigger: TTCATATAATGATGATTCTCACTGGTGGGGACACTT...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2
CDS-3UTR TCA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCAAAAGAAGAAACATATTaGCTAGGACTCCAAATCCAG	+
Preference number: 4 (lower is better) Translates to: SSFDFSGHQEYKHTYMISKEETY*LGLQIQ Trigger: CTGGATTTGGAGTCCTAGTCAATATGTTTCTTCTTT...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2
CDS-3UTR TCA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCATACTTGTGGTCATCATaGCACCTACAAGAAAAACAT	+
Preference number: 4 (lower is better) Translates to: SSFDFSGHQEYKHTYMISYLWSS*HLQEKH Trigger: ATGTTTTTCTTGTAGGTGTCATGATGACCACAAGTA...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2
CDS-3UTR TCA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCATGCTTGCATTGCCTTTaGTGTCTGAACAAAATAATC	+
Preference number: 4 (lower is better) Translates to: SSFDFSGHQEYKHTYMISCLHCL*CLNKII Trigger: GATTATTTTGTTCAGACATCAAAGGCAATGCAAGCA...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2
CDS-3UTR TCA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCAGATTATTCTCTTATCTaGACTGATTTGTACCACAGG	+
Preference number: 4 (lower is better) Translates to: SSFDFSGHQEYKHTYMISDYSLI*TDLYHR Trigger: CCTGTGGTACAAATCAGTTCAGATAAGAGAATAATC...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2
CDS-3UTR CAA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCAATGAAGATGCTTGCATaGCCTTTGATGTCTGAACAA	+
Preference number: 5 (lower is better) Translates to: SSFDFSGHQEYKHTYMISMKMLA*PLMSEQ Trigger: TTGTTCAGACATCAAAGGCAATGCAAGCATCTTCAT...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2
CDS-3UTR CAA 90 bp	AGCTCTTTTGACTTCTCTGGGCACCAGGAATACAAACACACATACATGATCTCAATTCATCACAAACATTaGAACAGTCAGGACAACTGG	+
Preference number: 5 (lower is better) Translates to: SSFDFSGHQEYKHTYMISIHHKH*NSQDNW Trigger: CCAGTTGTCCTGACTGTTCAAATGTTTGTGATGAAT...TGAGATCATGTATGTGTGTTTGTATTCCTGGTGCCCAGAGAAGTCAAAAGAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000203310.3 ENSMUST00000203488.3 ENSMUST00000226191.2