RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R208 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071493

Ensembl transcript IDs: ENSMUST00000124841.3, ENSMUST00000227136.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTTGTTTGTCATTCTTGCCAACTCTTTGCCCACTTGTCTGGTGTTaGGGCCGACCTGTGGCTCTCATGTCTGGGTTCAAGCCTGGGAGG +
Preference number: 1 (lower is better)
Translates to: ACLSFLPTLCPLVWC*GRPVALMSGFKPGR
Trigger: CCTCCCAGGCTTGAACCCAGACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CCA 90 bp GGTGGCAAACAGAGAATGAGATGTCTATATCACTGTAATTTGCTATaGTCTTTTTCTCAAGTCTGTGAAACAATAGGAAGACTGTCTGAA +
Preference number: 1 (lower is better)
Translates to: GGKQRMRCLYHCNLL*SFSQVCETIGRLSE
Trigger: TTCAGACAGTCTTCCTATTGTTTCACAGACTTGAGAAAAAGACCATAGCAAATTACAGTGATATAGACATCTCATTCTCTGTTTGCCACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 90 bp GGCTTGTTTGTCATTCTTGCCAACTCTTTGCCCACTTGTCTGGTGTaGGGGCCGACCTGTGGCTCTCATGTCTGGGTTCAAGCCTGGGAG +
Preference number: 2 (lower is better)
Translates to: GLFVILANSLPTCLV*GPTCGSHVWVQAWE
Trigger: CTCCCAGGCTTGAACCCAGACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 90 bp CCGAAGTCCCTGTTAGAAGGCTTGTTTGTCATTCTTGCCAACTCTTaGCCCACTTGTCTGGTGTTGGGGCCGACCTGTGGCTCTCATGTC +
Preference number: 2 (lower is better)
Translates to: PKSLLEGLFVILANS*PTCLVLGPTCGSHV
Trigger: GACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCCTTCTAACAGGGACTTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 90 bp CAGATTGAGAGAGGCCGACTGGGGCCCATCCATGGCACTGGACCATaGTCTGGTCTTCCAGAGAAACCAGGTTCATTTCTAGCAACCAAA +
Preference number: 2 (lower is better)
Translates to: QIERGRLGPIHGTGP*SGLPEKPGSFLATK
Trigger: TTTGGTTGCTAGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCATGGATGGGCCCCAGTCGGCCTCTCTCAATCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 90 bp CCTGTTAGAAGGCTTGTTTGTCATTCTTGCCAACTCTTTGCCCACTaGTCTGGTGTTGGGGCCGACCTGTGGCTCTCATGTCTGGGTTCA +
Preference number: 2 (lower is better)
Translates to: PVRRLVCHSCQLFAH*SGVGADLWLSCLGS
Trigger: TGAACCCAGACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCCTTCTAACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 90 bp GCCGACCTGTGGCTCTCATGTCTGGGTTCAAGCCTGGGAGGCATCTaGGAACTGAACAAAAAGAGAGAATCTAGGTGGGTAGAGAGAGAA +
Preference number: 2 (lower is better)
Translates to: ADLWLSCLGSSLGGI*ELNKKRESRWVERE
Trigger: TTCTCTCTCTACCCACCTAGATTCTCTCTTTTTGTTCAGTTCCAAGATGCCTCCCAGGCTTGAACCCAGACATGAGAGCCACAGGTCGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR-3UTR TCA 90 bp TCCCTGTTAGAAGGCTTGTTTGTCATTCTTGCCAACTCTTTGCCCACTTGTCTGGGCAGAACAATAGAGTaGTCCAGGGAGGCAGGCTCC +
Preference number: 2 (lower is better)
Translates to: SLLEGLFVILANSLPTCLGRTIE*SREAGS
Trigger: GGAGCCTGCCTCCCTGGATCACTCTATTGTTCTGCC...CAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCCTTCTAACAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR-3UTR CCA 90 bp TGGACACGCTTTATAAAGGAGAGGGGAAAGCCCATTCCCACCAAATCATCCTTGCTGGCTTCAGGCTTGTaGGGGGAGATTACAGTCTGG +
Preference number: 2 (lower is better)
Translates to: WTRFIKERGKPIPTKSSLLASGL*GEITVW
Trigger: CCAGACTGTAATCTCCCCCCACAAGCCTGAAGCCAG...CAAGGATGATTTGGTGGGAATGGGCTTTCCCCTCTCCTTTATAAAGCGTGTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR-3UTR TCA 90 bp TGTCATTCTTGCCAACTCTTTGCCCACTTGTCTGGTGTTGGGGCCGACCTGTGGTTTTTCTCAAGTCTGTaGAACAATAGGAAGACTGTC +
Preference number: 2 (lower is better)
Translates to: CHSCQLFAHLSGVGADLWFFSSL*NNRKTV
Trigger: GACAGTCTTCCTATTGTTTCACAGACTTGAGAAAAA...CCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR-3UTR GCA 90 bp TGGCACTGGACCATTGTCTGGTCTTCCAGAGAAACCAGGTTCATTTCTAGCAACACTTCTGTCAGTCACTaGGTGTTTGATGATCTCTTC +
Preference number: 2 (lower is better)
Translates to: WHWTIVWSSRETRFISSNTSVSH*VFDDLF
Trigger: GAAGAGATCATCAAACACGCAGTGACTGACAGAAGT...GTTGCTAGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR-3UTR TCA 90 bp TCCCTGTTAGAAGGCTTGTTTGTCATTCTTGCCAACTCTTTGCCCACTTGTCTGGTGGCAAACAGAGAATaGGATGTCTATATCACTGTA +
Preference number: 2 (lower is better)
Translates to: SLLEGLFVILANSLPTCLVANRE*DVYITV
Trigger: TACAGTGATATAGACATCTCATTCTCTGTTTGCCAC...CAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCCTTCTAACAGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR-3UTR GCA 90 bp GACACGCTTTATAAAGGAGAGGGGAAAGCCCATTCCCACCAAATCATCCTTGGACTGAAAATAAACACATaGTTAAACTACTTTGTGGGG +
Preference number: 2 (lower is better)
Translates to: DTLYKGEGKAHSHQIILGLKINT*LNYFVG
Trigger: CCCCACAAAGTAGTTTAAGCATGTGTTTATTTTCAG...TCCAAGGATGATTTGGTGGGAATGGGCTTTCCCCTCTCCTTTATAAAGCGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CCA 72 bp CTCTTTGCCCACTTGTCTGGTGTTGGGGCCGACCTGTaGCTCTCATGTCTGGGTTCAAGCCTGGGAGGCATC +
Preference number: 3 (lower is better)
Translates to: LFAHLSGVGADL*LSCLGSSLGGI
Trigger: GATGCCTCCCAGGCTTGAACCCAGACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR TCA 72 bp GCAGGTAGCAACAGTGGCAGTGGCAGAACAATAGAGTaGTCCAGGGAGGCAGGCTCCACCCTAGGTGATCTC +
Preference number: 3 (lower is better)
Translates to: AGSNSGSGRTIE*SREAGSTLGDL
Trigger: GAGATCACCTAGGGTGGAGCCTGCCTCCCTGGATCACTCTATTGTTCTGCCACTGCCACTGTTGCTACCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CCA 72 bp CCGACTGGGGCCCATCCATGGCACTGGACCATTGTCTaGTCTTCCAGAGAAACCAGGTTCATTTCTAGCAAC +
Preference number: 3 (lower is better)
Translates to: PTGAHPWHWTIV*SSRETRFISSN
Trigger: GTTGCTAGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCATGGATGGGCCCCAGTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CCA 72 bp TCATTCTTGCCAACTCTTTGCCCACTTGTCTGGTGTTaGGGCCGACCTGTGGCTCTCATGTCTGGGTTCAAG +
Preference number: 3 (lower is better)
Translates to: SFLPTLCPLVWC*GRPVALMSGFK
Trigger: CTTGAACCCAGACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CCA 72 bp TGTTTGTCATTCTTGCCAACTCTTTGCCCACTTGTCTaGTGTTGGGGCCGACCTGTGGCTCTCATGTCTGGG +
Preference number: 3 (lower is better)
Translates to: CLSFLPTLCPLV*CWGRPVALMSG
Trigger: CCCAGACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CCA 72 bp CAAAGTCAAGGTCTGGCTCAGCTGGCTTCAGGCTTGTaGGGGGAGATTACAGTCTGGAACCCTATTTTCCCA +
Preference number: 3 (lower is better)
Translates to: QSQGLAQLASGL*GEITVWNPIFP
Trigger: TGGGAAAATAGGGTTCCAGACTGTAATCTCCCCCCACAAGCCTGAAGCCAGCTGAGCCAGACCTTGACTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR CCA 90 bp AGATTACAGTCTGGAACCCTATTTTCCCACAGATTGAGAGAGGCCGACTGGGGCAACTGCTGGTGCAGATaGAGAGGCCCCGGGCCACCC +
Preference number: 4 (lower is better)
Translates to: RLQSGTLFSHRLREADWGNCWCR*RGPGPP
Trigger: GGGTGGCCCGGGGCCTCTCCATCTGCACCAGCAGTT...GCCCCAGTCGGCCTCTCTCAATCTGTGGGAAAATAGGGTTCCAGACTGTAATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR TCA 90 bp GGAGAGGGGAAAGCCCATTCCCACCAAATCATCCTTGGAGCCCAGCTGCAGGTGCCTCCCATGGCAACCTaGAACAATGCATCTCTCAGG +
Preference number: 4 (lower is better)
Translates to: GEGKAHSHQIILGAQLQVPPMAT*NNASLR
Trigger: CCTGAGAGATGCATTGTTTCAGGTTGCCATGGGAGG...CACCTGCAGCTGGGCTCCAAGGATGATTTGGTGGGAATGGGCTTTCCCCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 72 bp GGGAGATTACAGTCTGGAACCCTATTTTCCCACAGATaGAGAGAGGCCGACTGGGGCCCATCCATGGCACTG +
Preference number: 4 (lower is better)
Translates to: GRLQSGTLFSHR*READWGPSMAL
Trigger: CAGTGCCATGGATGGGCCCCAGTCGGCCTCTCTCAATCTGTGGGAAAATAGGGTTCCAGACTGTAATCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 72 bp AGAGGCCGACTGGGGCCCATCCATGGCACTGGACCATaGTCTGGTCTTCCAGAGAAACCAGGTTCATTTCTA +
Preference number: 4 (lower is better)
Translates to: RGRLGPIHGTGP*SGLPEKPGSFL
Trigger: TAGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCATGGATGGGCCCCAGTCGGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 72 bp GTCATTCTTGCCAACTCTTTGCCCACTTGTCTGGTGTaGGGGCCGACCTGTGGCTCTCATGTCTGGGTTCAA +
Preference number: 4 (lower is better)
Translates to: VILANSLPTCLV*GPTCGSHVWVQ
Trigger: TTGAACCCAGACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 72 bp AGGCTTGTTTGTCATTCTTGCCAACTCTTTGCCCACTaGTCTGGTGTTGGGGCCGACCTGTGGCTCTCATGT +
Preference number: 4 (lower is better)
Translates to: RLVCHSCQLFAH*SGVGADLWLSC
Trigger: ACATGAGAGCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 72 bp CTGTTAGAAGGCTTGTTTGTCATTCTTGCCAACTCTTaGCCCACTTGTCTGGTGTTGGGGCCGACCTGTGGC +
Preference number: 4 (lower is better)
Translates to: LLEGLFVILANS*PTCLVLGPTCG
Trigger: GCCACAGGTCGGCCCCAACACCAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCCTTCTAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR GCA 90 bp AACCCTATTTTCCCACAGATTGAGAGAGGCCGACTGGGGCCCATCCATGGCACTGGCAACCTGAAACAATaGATCTCTCAGGACCATGAG +
Preference number: 4 (lower is better)
Translates to: NPIFPQIERGRLGPIHGTGNLKQ*ISQDHE
Trigger: CTCATGGTCCTGAGAGATGCATTGTTTCAGGTTGCC...AGTGCCATGGATGGGCCCCAGTCGGCCTCTCTCAATCTGTGGGAAAATAGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR CCA 90 bp AACCCTATTTTCCCACAGATTGAGAGAGGCCGACTGGGGCCCATCCATGGCACTCTGATGATGACAGCCTaGACAACAGTGAGGAAACTG +
Preference number: 4 (lower is better)
Translates to: NPIFPQIERGRLGPIHGTLMMTA*TTVRKL
Trigger: CAGTTTCCTCACTGTTGTCCAGGCTGTCATCATCAG...AGTGCCATGGATGGGCCCCAGTCGGCCTCTCTCAATCTGTGGGAAAATAGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR GCA 90 bp GACACGCTTTATAAAGGAGAGGGGAAAGCCCATTCCCACCAAATCATCCTTGGATCTGTTCCACCCAGATaGTCTGGGACTGATGATGAC +
Preference number: 4 (lower is better)
Translates to: DTLYKGEGKAHSHQIILGSVPPR*SGTDDD
Trigger: GTCATCATCAGTCCCAGAGCATCTGGGTGGAACAGA...TCCAAGGATGATTTGGTGGGAATGGGCTTTCCCCTCTCCTTTATAAAGCGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR CCA 90 bp TCCCTGTTAGAAGGCTTGTTTGTCATTCTTGCCAACTCTTTGCCCACTTGTCTGCACTGGCCCCTCCCATaGCAACCTGAAACAATGCAT +
Preference number: 4 (lower is better)
Translates to: SLLEGLFVILANSLPTCLHWPLP*QPETMH
Trigger: ATGCATTGTTTCAGGTTGCCATGGGAGGGGCCAGTG...CAGACAAGTGGGCAAAGAGTTGGCAAGAATGACAAACAAGCCTTCTAACAGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR TCA 90 bp AGATTACAGTCTGGAACCCTATTTTCCCACAGATTGAGAGAGGCCGACTGGGGCCTCAATTTCTCCCAATaGGCATGCCAAAATTTACTC +
Preference number: 4 (lower is better)
Translates to: RLQSGTLFSHRLREADWGLNFSQ*ACQNLL
Trigger: GAGTAAATTTTGGCATGCTCATTGGGAGAAATTGAG...GCCCCAGTCGGCCTCTCTCAATCTGTGGGAAAATAGGGTTCCAGACTGTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR TCA 90 bp TGGACACGCTTTATAAAGGAGAGGGGAAAGCCCATTCCCACCAAATCATCCTTGGAGTATCCAAAAGGATaGGAAGAATGGAAGGATGTG +
Preference number: 4 (lower is better)
Translates to: WTRFIKERGKPIPTKSSLEYPKG*EEWKDV
Trigger: CACATCCTTCCATTCTTCTCATCCTTTTGGATACTC...CAAGGATGATTTGGTGGGAATGGGCTTTCCCCTCTCCTTTATAAAGCGTGTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR TCA 90 bp CATCCATGGCACTGGACCATTGTCTGGTCTTCCAGAGAAACCAGGTTCATTTCTTCTCCAGGTAAACAATaGTCTTACAGCCTATATCAT +
Preference number: 4 (lower is better)
Translates to: HPWHWTIVWSSRETRFISSPGKQ*SYSLYH
Trigger: ATGATATAGGCTGTAAGATCATTGTTTACCTGGAGA...AGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCATGGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR TCA 90 bp TTGTGGGGTTTGTCTTATCCACAATATTGTAGAACAGAGATTTCTTTGACACTTCAGCCTGGACAACAGTaGGGAAACTGCTGGTGCAGA +
Preference number: 4 (lower is better)
Translates to: LWGLSYPQYCRTEISLTLQPGQQ*GNCWCR
Trigger: TCTGCACCAGCAGTTTCCTCACTGTTGTCCAGGCTG...AAGTGTCAAAGAAATCTCTGTTCTACAATATTGTGGATAAGACAAACCCCACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR CCA 90 bp TGGCACTGGACCATTGTCTGGTCTTCCAGAGAAACCAGGTTCATTTCTAGCAACAAAGGGGCTAAAAGTTaGATAACAAAGGGTCAGAAA +
Preference number: 4 (lower is better)
Translates to: WHWTIVWSSRETRFISSNKGAKS*ITKGQK
Trigger: TTTCTGACCCTTTGTTATCCAACTTTTAGCCCCTTT...GTTGCTAGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
3UTR CAA 72 bp GGCAAACAGAGAATGAGATGTCTATATCACTGTAATTaGCTATGGTCTTTTTCTCAAGTCTGTGAAACAATA +
Preference number: 4 (lower is better)
Translates to: GKQRMRCLYHCN*LWSFSQVCETI
Trigger: TATTGTTTCACAGACTTGAGAAAAAGACCATAGCAAATTACAGTGATATAGACATCTCATTCTCTGTTTGCC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS-3UTR CAA 90 bp TGGCACTGGACCATTGTCTGGTCTTCCAGAGAAACCAGGTTCATTTCTAGCAACCAAAAGGAGGACACTTaGAGCAGCTCTCAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: WHWTIVWSSRETRFISSNQKEDT*SSSQLR
Trigger: CCTGAGCTGAGAGCTGCTCAAAGTGTCCTCCTTTTG...GTTGCTAGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS GCA 90 bp ATTAAAGCATTGAGTATCCAAAAGGATGAGAAGAATGGAAGGATGTaGCATGCAGACTCTGGCCTGAGTCTGTTCCACCCAGATGCTCTG +
Preference number: 5 (lower is better)
Translates to: IKALSIQKDEKNGRM*HADSGLSLFHPDAL
Trigger: CAGAGCATCTGGGTGGAACAGACTCAGGCCAGAGTCTGCATGGCACATCCTTCCATTCTTCTCATCCTTTTGGATACTCAATGCTTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124841.3
ENSMUST00000227136.2
CDS CCA 90 bp ACTCAGAAGCCCGTCCCTGTGAATCAGCACAAAGGGGCTAAAAGTTaGATAACAAAGGGTCAGAAATTCTCGAGTATTTATCATCAGGGT +
Preference number: 5 (lower is better)
Translates to: TQKPVPVNQHKGAKS*ITKGQKFSSIYHQG
Trigger: ACCCTGATGATAAATACTCGAGAATTTCTGACCCTTTGTTATCCAACTTTTAGCCCCTTTGTGCTGATTCACAGGGACGGGCTTCTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124841.3
ENSMUST00000227136.2
CDS-3UTR CAA 90 bp TGGCACTGGACCATTGTCTGGTCTTCCAGAGAAACCAGGTTCATTTCTAGCAACTTTATCATCAGGGTGTaGTCCTTTGAAGAGATGTTT +
Preference number: 5 (lower is better)
Translates to: WHWTIVWSSRETRFISSNFIIRV*SFEEMF
Trigger: AAACATCTCTTCAAAGGACAACACCCTGATGATAAA...GTTGCTAGAAATGAACCTGGTTTCTCTGGAAGACCAGACAATGGTCCAGTGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227136.2
CDS CCA 72 bp GGTGGTGCTTATGGAGTAGAAATACCATGTAGCCACTaGCCCCTCCCATGGCAACCTGAAACAATGCATCTC +
Preference number: 6 (lower is better)
Translates to: GGAYGVEIPCSH*PLPWQPETMHL
Trigger: GAGATGCATTGTTTCAGGTTGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTACTCCATAAGCACCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124841.3
ENSMUST00000227136.2
CDS GCA 72 bp TTGAGTATCCAAAAGGATGAGAAGAATGGAAGGATGTaGCATGCAGACTCTGGCCTGAGTCTGTTCCACCCA +
Preference number: 6 (lower is better)
Translates to: LSIQKDEKNGRM*HADSGLSLFHP
Trigger: TGGGTGGAACAGACTCAGGCCAGAGTCTGCATGGCACATCCTTCCATTCTTCTCATCCTTTTGGATACTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124841.3
ENSMUST00000227136.2
CDS TCA 72 bp TGGAGAGGCCCCGGGCCACCCTCTCCAGGTAAACAATaGTCTTACAGCCTATATCATCTAAGAAATTTCTCA +
Preference number: 6 (lower is better)
Translates to: WRGPGPPSPGKQ*SYSLYHLRNFS
Trigger: TGAGAAATTTCTTAGATGATATAGGCTGTAAGATCATTGTTTACCTGGAGAGGGTGGCCCGGGGCCTCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124841.3
ENSMUST00000227136.2
CDS CCA 72 bp CCCGTCCCTGTGAATCAGCACAAAGGGGCTAAAAGTTaGATAACAAAGGGTCAGAAATTCTCGAGTATTTAT +
Preference number: 6 (lower is better)
Translates to: PVPVNQHKGAKS*ITKGQKFSSIY
Trigger: ATAAATACTCGAGAATTTCTGACCCTTTGTTATCCAACTTTTAGCCCCTTTGTGCTGATTCACAGGGACGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124841.3
ENSMUST00000227136.2
CDS TCA 72 bp GGTATATGGGTTTCTTCTCAGAACTTCCCCAATAACTaGAAGTATAATTCACAGAAACAAACATGTTCCCCA +
Preference number: 6 (lower is better)
Translates to: GIWVSSQNFPNN*KYNSQKQTCSP
Trigger: TGGGGAACATGTTTGTTTCTGTGAATTATACTTTCAGTTATTGGGGAAGTTCTGAGAAGAAACCCATATACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000124841.3
ENSMUST00000227136.2