Pregenerated sensors for VMN1R206 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000101578Ensembl transcript IDs: ENSMUST00000187140.3, ENSMUST00000227244.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTGTGTTATGGACAGGGACTGGAGCCTGTTTTCACATATGCACCTaGGATTCCAGTCTCACTTCTTGCTGCCACAGCTGCATATTTTCT | + |
|
Preference number: 1 (lower is better) Translates to: SVLWTGTGACFHICT*DSSLTSCCHSCIFS Trigger: AGAAAATATGCAGCTGTGGCAGCAAGAAGTGAGACTGGAATCTCAGGTGCATATGTGAAAACAGGCTCCAGTCCCTGTCCATAACACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR TCA 90 bp | CTATTTCCATCAAGAGTGACATGGCCCTTGGCCACCATGAAGTACTaGGTATATGTCCCACAGAGTACATTTGCTTACAGTCACAGTAAT | + |
|
Preference number: 1 (lower is better) Translates to: LFPSRVTWPLATMKY*VYVPQSTFAYSHSN Trigger: ATTACTGTGACTGTAAGCAAATGTACTCTGTGGGACATATACTCAGTACTTCATGGTGGCCAAGGGCCATGTCACTCTTGATGGAAATAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR TCA 90 bp | AGATGTCAAGCTCTGAGTGGCCACGTCTTCAGATTTCTGATTATATaGGGAACCAGCCACAAGCAGAGTTCACAAATGGATGTAGTTTTT | + |
|
Preference number: 1 (lower is better) Translates to: RCQALSGHVFRFLII*GTSHKQSSQMDVVF Trigger: AAAAACTACATCCATTTGTGAACTCTGCTTGTGGCTGGTTCCTCATATAATCAGAAATCTGAAGACGTGGCCACTCAGAGCTTGACATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR GCA 90 bp | TTCAAGGATGTGAGTCACCGGGAAGACTGTCTGACAACAATCACATaGTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATATTGGAG | + |
|
Preference number: 1 (lower is better) Translates to: FKDVSHREDCLTTIT*LNCFVDFVLPTILE Trigger: CTCCAATATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAGTCTTCCCGGTGACTCACATCCTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CCA 90 bp | GCTTGGGATTCAGCATCTAAAGATACTAGTGCATTTTGGAAGGAGTaGAGAGGATATATGAACCAGAGGACTATTGTACATTTGGCTGAA | + |
|
Preference number: 1 (lower is better) Translates to: AWDSASKDTSAFWKE*RGYMNQRTIVHLAE Trigger: TTCAGCCAAATGTACAATAGTCCTCTGGTTCATATATCCTCTCCACTCCTTCCAAAATGCACTAGTATCTTTAGATGCTGAATCCCAAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR GCA 90 bp | AATTTGATGTTTGGTGTTCTCTCCAGTCTTTATAGGCACAGGACATaGACATGTTGCACAGTCATCAATGCAGACAAAATATTCCTTCAT | + |
|
Preference number: 1 (lower is better) Translates to: NLMFGVLSSLYRHRT*TCCTVINADKIFLH Trigger: ATGAAGGAATATTTTGTCTGCATTGATGACTGTGCAACATGTGCATGTCCTGTGCCTATAAAGACTGGAGAGAACACCAAACATCAAATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR TCA 90 bp | TGTTTATTCCTGCTGAGAACTCTTATGAATATAAAACCGATGAAATaGTTCAGGGCATTTAAGTTTTGTGACTGGTGCAATGGGCCATCA | + |
|
Preference number: 1 (lower is better) Translates to: CLFLLRTLMNIKPMK*FRAFKFCDWCNGPS Trigger: TGATGGCCCATTGCACCAGTCACAAAACTTAAATGCCCTGAATCATTTCATCGGTTTTATATTCATAAGAGTTCTCAGCAGGAATAAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CCA 90 bp | TCAAGATTTAAGAAATTGTCTGGTCTTCTCCTAGAAACCATACAATaGCTCAGAACAATCACTCTAGTTGCAGTCAGCAATTTGATGTTT | + |
|
Preference number: 1 (lower is better) Translates to: SRFKKLSGLLLETIQ*LRTITLVAVSNLMF Trigger: AAACATCAAATTGCTGACTGCAACTAGAGTGATTGTTCTGAGCCATTGTATGGTTTCTAGGAGAAGACCAGACAATTTCTTAAATCTTGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR-3UTR TCA 90 bp | GAATCTATTTCCATCAAGAGTGACATGGCCCTTGGCCACCATGAAGTACTGAGTACGTCTTCAGATTTCTaGTTATATGAGGAACCAGCC | + |
|
Preference number: 2 (lower is better) Translates to: ESISIKSDMALGHHEVLSTSSDF*LYEEPA Trigger: GGCTGGTTCCTCATATAATCAGAAATCTGAAGACGT...ACTCAGTACTTCATGGTGGCCAAGGGCCATGTCACTCTTGATGGAAATAGATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CAA 90 bp | ACCATACAATGGCTCAGAACAATCACTCTAGTTGCAGTCAGCAATTaGATGTTTGGTGTTCTCTCCAGTCTTTATAGGCACAGGACATGC | + |
|
Preference number: 2 (lower is better) Translates to: TIQWLRTITLVAVSN*MFGVLSSLYRHRTC Trigger: GCATGTCCTGTGCCTATAAAGACTGGAGAGAACACCAAACATCAAATTGCTGACTGCAACTAGAGTGATTGTTCTGAGCCATTGTATGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR-3UTR CCA 90 bp | AGTGACATGGCCCTTGGCCACCATGAAGTACTGAGTATATGTCCCACAGAGTACTTCAAGAGTGGCAAGTaGAAAAGGAAATGTCTATAT | + |
|
Preference number: 2 (lower is better) Translates to: SDMALGHHEVLSICPTEYFKSGK*KRKCLY Trigger: ATATAGACATTTCCTTTTCCACTTGCCACTCTTGAA...GTACTCTGTGGGACATATACTCAGTACTTCATGGTGGCCAAGGGCCATGTCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR-3UTR GCA 90 bp | GGGATTCAGCATCTAAAGATACTAGTGCATTTTGGAAGGAGTGGAGAGGATATATCCAGTCTCACTTCTTaGTGCCACAGCTGCATATTT | + |
|
Preference number: 2 (lower is better) Translates to: GIQHLKILVHFGRSGEDISSLTS*CHSCIF Trigger: AAATATGCAGCTGTGGCAGCAAGAAGTGAGACTGGA...TATATCCTCTCCACTCCTTCCAAAATGCACTAGTATCTTTAGATGCTGAATCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CAA 90 bp | TGCTATGCTCTTATAATGACGATGTGCCCAGGTGATTCATGTATATaGGTTCACTCAACTCAATTTAGGCAGACTCATTTCTTTACACAA | + |
|
Preference number: 2 (lower is better) Translates to: CYALIMTMCPGDSCI*VHSTQFRQTHFFTQ Trigger: TTGTGTAAAGAAATGAGTCTGCCTAAATTGAGTTGAGTGAACCAATATACATGAATCACCTGGGCACATCGTCATTATAAGAGCATAGCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR-3UTR GCA 90 bp | GGGATTCAGCATCTAAAGATACTAGTGCATTTTGGAAGGAGTGGAGAGGATATATTGCACAGTCATCAATaGAGACAAAATATTCCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: GIQHLKILVHFGRSGEDILHSHQ*RQNIPS Trigger: TGAAGGAATATTTTGTCTGCATTGATGACTGTGCAA...TATATCCTCTCCACTCCTTCCAAAATGCACTAGTATCTTTAGATGCTGAATCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR-3UTR GCA 90 bp | ACGTATTTCCTCAGTGCTAAAGAGATGGATCAAGATTTAAGAAATTGTCTGGTCAACAATCACTCTAGTTaGAGTCAGCAATTTGATGTT | + |
|
Preference number: 2 (lower is better) Translates to: TYFLSAKEMDQDLRNCLVNNHSS*SQQFDV Trigger: AACATCAAATTGCTGACTGCAACTAGAGTGATTGTT...GACCAGACAATTTCTTAAATCTTGATCCATCTCTTTAGCACTGAGGAAATACGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR TCA 72 bp | TCAAGAGTGACATGGCCCTTGGCCACCATGAAGTACTaGGTATATGTCCCACAGAGTACATTTGCTTACAGT | + |
|
Preference number: 3 (lower is better) Translates to: SRVTWPLATMKY*VYVPQSTFAYS Trigger: ACTGTAAGCAAATGTACTCTGTGGGACATATACTCAGTACTTCATGGTGGCCAAGGGCCATGTCACTCTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CCA 72 bp | TGTTTGTCTATGTGTGTCTGTGTTATGGACAGGGACTaGAGCCTGTTTTCACATATGCACCTGAGATTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: CLSMCVCVMDRD*SLFSHMHLRFQ Trigger: CTGGAATCTCAGGTGCATATGTGAAAACAGGCTCCAGTCCCTGTCCATAACACAGACACACATAGACAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR GCA 72 bp | GTGAGTCACCGGGAAGACTGTCTGACAACAATCACATaGTTAAACTGCTTTGTGGATTTTGTCTTACCCACA | + |
|
Preference number: 3 (lower is better) Translates to: VSHREDCLTTIT*LNCFVDFVLPT Trigger: TGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAGTCTTCCCGGTGACTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CCA 72 bp | TGTGCCACTCAAAGTCCACGCCATCCTTGTTCATGCTaGATCAACAATTATACATCTCCTGTCTACCTTTTT | + |
|
Preference number: 3 (lower is better) Translates to: CATQSPRHPCSC*INNYTSPVYLF Trigger: AAAAAGGTAGACAGGAGATGTATAATTGTTGATCCAGCATGAACAAGGATGGCGTGGACTTTGAGTGGCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CCA 72 bp | GCTTGGGATTCAGCATCTAAAGATACTAGTGCATTTTaGAAGGAGTGGAGAGGATATATGAACCAGAGGACT | + |
|
Preference number: 3 (lower is better) Translates to: AWDSASKDTSAF*KEWRGYMNQRT Trigger: AGTCCTCTGGTTCATATATCCTCTCCACTCCTTCCAAAATGCACTAGTATCTTTAGATGCTGAATCCCAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR-3UTR CAA 90 bp | GGGATTCAGCATCTAAAGATACTAGTGCATTTTGGAAGGAGTGGAGAGGATATAGTTGCAGTCAGCAATTaGATGTTTGGTGTTCTCTCC | + |
|
Preference number: 3 (lower is better) Translates to: GIQHLKILVHFGRSGEDIVAVSN*MFGVLS Trigger: GGAGAGAACACCAAACATCAAATTGCTGACTGCAAC...TATATCCTCTCCACTCCTTCCAAAATGCACTAGTATCTTTAGATGCTGAATCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR GCA 72 bp | CTCTCCAGTCTTTATAGGCACAGGACATGCACATGTTaGACAGTCATCAATGCAGACAAAATATTCCTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: LSSLYRHRTCTC*TVINADKIFLH Trigger: ATGAAGGAATATTTTGTCTGCATTGATGACTGTGCAACATGTGCATGTCCTGTGCCTATAAAGACTGGAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR-3UTR CAA 90 bp | GGGATTCAGCATCTAAAGATACTAGTGCATTTTGGAAGGAGTGGAGAGGATATAGTGATGCAGTTGCATTaGTGTCTGCTATGCTCTTAT | + |
|
Preference number: 3 (lower is better) Translates to: GIQHLKILVHFGRSGEDIVMQLH*CLLCSY Trigger: ATAAGAGCATAGCAGACACAAATGCAACTGCATCAC...TATATCCTCTCCACTCCTTCCAAAATGCACTAGTATCTTTAGATGCTGAATCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CCA 72 bp | AAGAAATTGTCTGGTCTTCTCCTAGAAACCATACAATaGCTCAGAACAATCACTCTAGTTGCAGTCAGCAAT | + |
|
Preference number: 3 (lower is better) Translates to: KKLSGLLLETIQ*LRTITLVAVSN Trigger: ATTGCTGACTGCAACTAGAGTGATTGTTCTGAGCCATTGTATGGTTTCTAGGAGAAGACCAGACAATTTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| CDS-3UTR TCA 90 bp | GGAAGACTGTCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTAGAAGCTTGGAGCTCTaGAGGAAGAGGACATGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GRLSDNNHMLKLLCGFCLRSLEL*RKRTCW Trigger: CCAGCATGTCCTCTTCCTTCAGAGCTCCAAGCTTCT...AAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAGTCTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| 3UTR CAA 72 bp | ACATTAGATCCAGATGTGCTGGTGATGCAGTTGCATTaGTGTCTGCTATGCTCTTATAATGACGATGTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: TLDPDVLVMQLH*CLLCSYNDDVP Trigger: GGGCACATCGTCATTATAAGAGCATAGCAGACACAAATGCAACTGCATCACCAGCACATCTGGATCTAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CAA 72 bp | TGGCTCAGAACAATCACTCTAGTTGCAGTCAGCAATTaGATGTTTGGTGTTCTCTCCAGTCTTTATAGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: WLRTITLVAVSN*MFGVLSSLYRH Trigger: GTGCCTATAAAGACTGGAGAGAACACCAAACATCAAATTGCTGACTGCAACTAGAGTGATTGTTCTGAGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| CDS-3UTR CCA 90 bp | AATCAGCTTGCAGGTCTACTTAGGCTTGGGATTCAGCATCTAAAGATACTAGTGAAGAGGACATGCTGGTaGTGTTTGTGGAGAAGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: NQLAGLLRLGIQHLKILVKRTCW*CLWRRN Trigger: ATTTCTTCTCCACAAACACCACCAGCATGTCCTCTT...CACTAGTATCTTTAGATGCTGAATCCCAAGCCTAAGTAGACCTGCAAGCTGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| CDS-3UTR TCA 90 bp | CTGTCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACGGTTTCCCCACCAACTaGACATATAATTCACAGACA | + |
|
Preference number: 4 (lower is better) Translates to: LSDNNHMLKLLCGFCLTHGFPTN*TYNSQT Trigger: TGTCTGTGAATTATATGTTCAGTTGGTGGGGAAACC...GTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR TCA 90 bp | TCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATAGAAGGAAGATACTTTaGGCAGCTCTCAGTTCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: SDNNHMLKLLCGFCLTHNRRKIL*AALSSG Trigger: CCCTGAACTGAGAGCTGCTCAAAGTATCTTCCTTCT...ATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR CCA 90 bp | GACTGTCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCAAGAGGACATGCTGGTaGTGTTTGTGGAGAAGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: DCLTTITCLNCFVDFVLPKRTCW*CLWRRN Trigger: ATTTCTTCTCCACAAACACCACCAGCATGTCCTCTT...GGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR TCA 90 bp | AACTGTCAACTCTCTAGTGAAGTATCTGAAGGGCATAGTTTTAATTCCATTTACAGAAGGAAGATACTTTaGGCAGCTCTCAGTTCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: NCQLSSEVSEGHSFNSIYRRKIL*AALSSG Trigger: CCCTGAACTGAGAGCTGCTCAAAGTATCTTCCTTCT...GTAAATGGAATTAAAACTATGCCCTTCAGATACTTCACTAGAGAGTTGACAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| 3UTR CAA 72 bp | CTTATAATGACGATGTGCCCAGGTGATTCATGTATATaGGTTCACTCAACTCAATTTAGGCAGACTCATTTC | + |
|
Preference number: 4 (lower is better) Translates to: LIMTMCPGDSCI*VHSTQFRQTHF Trigger: GAAATGAGTCTGCCTAAATTGAGTTGAGTGAACCAATATACATGAATCACCTGGGCACATCGTCATTATAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| CDS-3UTR TCA 90 bp | GACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATATTGGTTTCCCCACCAACTaGACATATAATTCACAGACA | + |
|
Preference number: 4 (lower is better) Translates to: DNNHMLKLLCGFCLTHNIGFPTN*TYNSQT Trigger: TGTCTGTGAATTATATGTTCAGTTGGTGGGGAAACC...AATATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR TCA 90 bp | GCTTTGTGGATTTTGTCTTACCCACAATATTGGAGAATTGAGATATCTTTGACATCAGACCTACACTTGTaGTGGAATGGATTAGGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: ALWILSYPQYWRIEISLTSDLHL*WNGLGS Trigger: TGAACCTAATCCATTCCATCACAAGTGTAGGTCTGA...TGTCAAAGATATCTCAATTCTCCAATATTGTGGGTAAGACAAAATCCACAAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR TCA 90 bp | TGGTTCACTCAACTCAATTTAGGCAGACTCATTTCTTTACACAATTTTCACCATTCAGACCTACACTTGTaGTGGAATGGATTAGGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: WFTQLNLGRLISLHNFHHSDLHL*WNGLGS Trigger: TGAACCTAATCCATTCCATCACAAGTGTAGGTCTGA...ATGGTGAAAATTGTGTAAAGAAATGAGTCTGCCTAAATTGAGTTGAGTGAACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| CDS-3UTR CCA 90 bp | GACTGTCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACACTTGTGATGGAATaGATTAGGTTCATACTCATT | + |
|
Preference number: 4 (lower is better) Translates to: DCLTTITCLNCFVDFVLPTLVME*IRFILI Trigger: AATGAGTATGAACCTAATCCATTCCATCACAAGTGT...GGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR CCA 90 bp | AATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATATTGGAGAATTCTATAGAGAAGCTTaGAGCTCTGAAGGAAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NHMLKLLCGFCLTHNIGEFYREA*SSEGRG Trigger: TCCTCTTCCTTCAGAGCTCCAAGCTTCTCTATAGAA...TTCTCCAATATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR GCA 90 bp | ATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATATTGGAGAATAAGAATAAAAGGATGTaGCATGCAGACCTTGGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: ITCLNCFVDFVLPTILENKNKRM*HADLGL Trigger: AAGACCAAGGTCTGCATGGCACATCCTTTTATTCTT...ATTCTCCAATATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR GCA 90 bp | ACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATATTGAAGAATAAAAGGATGTaGCATGCAGACCTTGGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: TTITCLNCFVDFVLPTILKNKRM*HADLGL Trigger: AAGACCAAGGTCTGCATGGCACATCCTTTTATTCTT...CAATATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR CCA 90 bp | GAAGACTGTCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTAACACTTGTGATGGAATaGATTAGGTTCATACTCATT | + |
|
Preference number: 4 (lower is better) Translates to: EDCLTTITCLNCFVDFVLTLVME*IRFILI Trigger: AATGAGTATGAACCTAATCCATTCCATCACAAGTGT...TAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAGTCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS GCA 90 bp | AACCAGAAGCCCATCCCTGTGAATCAGCACCAGGGGGCTAAAAGTTaGATAACCAAGGGCCAGAAATTCTTGAGTATTTGCTATCAATGT | + |
|
Preference number: 5 (lower is better) Translates to: NQKPIPVNQHQGAKS*ITKGQKFLSICYQC Trigger: ACATTGATAGCAAATACTCAAGAATTTCTGGCCCTTGGTTATGCAACTTTTAGCCCCCTGGTGCTGATTCACAGGGATGGGCTTCTGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR CAA 90 bp | GGAAGACTGTCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTCAGAAGGAAGATACTTaGAGCAGCTCTCAGTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: GRLSDNNHMLKLLCGFCLQKEDT*SSSQFR Trigger: CCTGAACTGAGAGCTGCTCAAAGTATCTTCCTTCTG...AAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGACAGTCTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS GCA 90 bp | ATTAAAGCATTGAGTATCCAAAAGTATAGGAAGAATAAAAGGATGTaGCATGCAGACCTTGGTCTTAGTCTGCTCCACCTAGATGCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: IKALSIQKYRKNKRM*HADLGLSLLHLDAL Trigger: CAGAGCATCTAGGTGGAGCAGACTAAGACCAAGGTCTGCATGGCACATCCTTTTATTCTTCCTATACTTTTGGATACTCAATGCTTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR CAA 90 bp | TGGTTCACTCAACTCAATTTAGGCAGACTCATTTCTTTACACAATTTTCACCATCAGAAGGAAGATACTTaGAGCAGCTCTCAGTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: WFTQLNLGRLISLHNFHHQKEDT*SSSQFR Trigger: CCTGAACTGAGAGCTGCTCAAAGTATCTTCCTTCTG...ATGGTGAAAATTGTGTAAAGAAATGAGTCTGCCTAAATTGAGTTGAGTGAACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227244.2 |
||
| CDS-3UTR CAA 90 bp | TCTGACAACAATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATTTTGCTATCAATGTATaGTCCCTTGAAGAGAGACTT | + |
|
Preference number: 5 (lower is better) Translates to: SDNNHMLKLLCGFCLTHNFAINV*SLEERL Trigger: AAGTCTCTCTTCAAGGGACAATACATTGATAGCAAA...ATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGATTGTTGTCAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR CAA 90 bp | ATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATATTGGAGAATTTTGCTATCAATGTATaGTCCCTTGAAGAGAGACTT | + |
|
Preference number: 5 (lower is better) Translates to: ITCLNCFVDFVLPTILENFAINV*SLEERL Trigger: AAGTCTCTCTTCAAGGGACAATACATTGATAGCAAA...ATTCTCCAATATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS-3UTR CAA 90 bp | ATCACATGCTTAAACTGCTTTGTGGATTTTGTCTTACCCACAATATTGGAGAATAAGGGCCAGAAATTCTaGAGTATTTGCTATCAATGT | + |
|
Preference number: 5 (lower is better) Translates to: ITCLNCFVDFVLPTILENKGQKF*SICYQC Trigger: ACATTGATAGCAAATACTCAAGAATTTCTGGCCCTT...ATTCTCCAATATTGTGGGTAAGACAAAATCCACAAAGCAGTTTAAGCATGTGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS GCA 72 bp | CCCATCCCTGTGAATCAGCACCAGGGGGCTAAAAGTTaGATAACCAAGGGCCAGAAATTCTTGAGTATTTGC | + |
|
Preference number: 6 (lower is better) Translates to: PIPVNQHQGAKS*ITKGQKFLSIC Trigger: GCAAATACTCAAGAATTTCTGGCCCTTGGTTATGCAACTTTTAGCCCCCTGGTGCTGATTCACAGGGATGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS TCA 72 bp | GCTGTACAGATTTCTTCTCAGGGTTTCCCCACCAACTaGACATATAATTCACAGACACAGACATGTTCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: AVQISSQGFPTN*TYNSQTQTCSP Trigger: TGGGGAACATGTCTGTGTCTGTGAATTATATGTTCAGTTGGTGGGGAAACCCTGAGAAGAAATCTGTACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS CCA 72 bp | AGCTGTGACATATTCAGACCTACACTTGTGATGGAATaGATTAGGTTCATACTCATTAAAGCATTGAGTATC | + |
|
Preference number: 6 (lower is better) Translates to: SCDIFRPTLVME*IRFILIKALSI Trigger: GATACTCAATGCTTTAATGAGTATGAACCTAATCCATTCCATCACAAGTGTAGGTCTGAATATGTCACAGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS CAA 72 bp | AAGTTGCATAACCAAGGGCCAGAAATTCTTGAGTATTaGCTATCAATGTATTGTCCCTTGAAGAGAGACTTA | + |
|
Preference number: 6 (lower is better) Translates to: KLHNQGPEILEY*LSMYCPLKRDL Trigger: TAAGTCTCTCTTCAAGGGACAATACATTGATAGCAAATACTCAAGAATTTCTGGCCCTTGGTTATGCAACTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||
| CDS CAA 90 bp | CCTACACTTGTGATGGAATGGATTAGGTTCATACTCATTAAAGCATaGAGTATCCAAAAGTATAGGAAGAATAAAAGGATGTGCCATGCA | + |
|
Preference number: 6 (lower is better) Translates to: PTLVMEWIRFILIKA*SIQKYRKNKRMCHA Trigger: TGCATGGCACATCCTTTTATTCTTCCTATACTTTTGGATACTCAATGCTTTAATGAGTATGAACCTAATCCATTCCATCACAAGTGTAGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000187140.3 ENSMUST00000227244.2 |
||