RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R203 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069289

Ensembl transcript IDs: ENSMUST00000091729.2, ENSMUST00000227520.2, ENSMUST00000228889.2

Found 257 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGAAGGGCAGGGATAGATCTCCTGAGTCTGGTGACTGGCAAGAGGTaGGGGCAGCTCTGCCACTGCATGCAAAGGGTAGGGCAAGCTCAG +
Preference number: 1 (lower is better)
Translates to: RRAGIDLLSLVTGKR*GQLCHCMQRVGQAQ
Trigger: CTGAGCTTGCCCTACCCTTTGCATGCAGTGGCAGAGCTGCCCCCACCTCTTGCCAGTCACCAGACTCAGGAGATCTATCCCTGCCCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp ACTTGTTCCAAGGGCCAGCGTTCCCACATTGCTCAGGTGAGGGGTTaGGACAGCTCTCTGGTGCACTCTTCCTCTGCGCTAGCTCTCCCT +
Preference number: 1 (lower is better)
Translates to: TCSKGQRSHIAQVRG*DSSLVHSSSALALP
Trigger: AGGGAGAGCTAGCGCAGAGGAAGAGTGCACCAGAGAGCTGTCCCAACCCCTCACCTGAGCAATGTGGGAACGCTGGCCCTTGGAACAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp ACTGAGGCTGCACCTTCACCAATGGCCTTCCATGGCCTCTCACAGTaGCGAGCCTCAGCTGCTCTTTGTGACCCCTTCATGCCTTCAAAA +
Preference number: 1 (lower is better)
Translates to: TEAAPSPMAFHGLSQ*RASAALCDPFMPSK
Trigger: TTTTGAAGGCATGAAGGGGTCACAAAGAGCAGCTGAGGCTCGGCACTGTGAGAGGCCATGGAAGGCCATTGGTGAAGGTGCAGCCTCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp ATCTCTTCCTGTGTTCCCATGACATTCAAGGACATGAGCTGTGCCTaGGCCCAGCCTGACCCCCAAGGCTGTCAAGGAGGATCGATGTTC +
Preference number: 1 (lower is better)
Translates to: ISSCVPMTFKDMSCA*AQPDPQGCQGGSMF
Trigger: GAACATCGATCCTCCTTGACAGCCTTGGGGGTCAGGCTGGGCTCAGGCACAGCTCATGTCCTTGAATGTCATGGGAACACAGGAAGAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp GGACAGCTCTCTGGTGCACTCTTCCTCTGCGCTAGCTCTCCCTCCTaGAGGAGGTGGAAGTGGGTGATTATGGAGGTATTTCTCCTACAT +
Preference number: 1 (lower is better)
Translates to: GQLSGALFLCASSPS*RRWKWVIMEVFLLH
Trigger: ATGTAGGAGAAATACCTCCATAATCACCCACTTCCACCTCCTGCAGGAGGGAGAGCTAGCGCAGAGGAAGAGTGCACCAGAGAGCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp GCCTCTCACAGTGCCGAGCCTCAGCTGCTCTTTGTGACCCCTTCATaGCTTCAAAACCAGCACCACCTGGGTGACTCTTACACATTACCA +
Preference number: 1 (lower is better)
Translates to: ASHSAEPQLLFVTPS*LQNQHHLGDSYTLP
Trigger: TGGTAATGTGTAAGAGTCACCCAGGTGGTGCTGGTTTTGAAGGCATGAAGGGGTCACAAAGAGCAGCTGAGGCTCGGCACTGTGAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp TCTGGTGCACTCTTCCTCTGCGCTAGCTCTCCCTCCTGCAGGAGGTaGAAGTGGGTGATTATGGAGGTATTTCTCCTACATCCATGCCAC +
Preference number: 1 (lower is better)
Translates to: SGALFLCASSPSCRR*KWVIMEVFLLHPCH
Trigger: GTGGCATGGATGTAGGAGAAATACCTCCATAATCACCCACTTCCACCTCCTGCAGGAGGGAGAGCTAGCGCAGAGGAAGAGTGCACCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp TTACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTaGGAGCATGGCAGCATCCAGGCTGTCATGGCACAGGCAGAGTTG +
Preference number: 1 (lower is better)
Translates to: LLGAGLQVHSPLSSR*EHGSIQAVMAQAEL
Trigger: CAACTCTGCCTGTGCCATGACAGCCTGGATGCTGCCATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp ATGTCTGGGATCCAACTCACGATCTTCTGGGCTCCTTCAAGGGCTTaGGTCACTTCTCCAGCCATGCCCTTTGTAGCACATGCGTCATCC +
Preference number: 1 (lower is better)
Translates to: MSGIQLTIFWAPSRA*VTSPAMPFVAHASS
Trigger: GGATGACGCATGTGCTACAAAGGGCATGGCTGGAGAAGTGACCCAAGCCCTTGAAGGAGCCCAGAAGATCGTGAGTTGGATCCCAGACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp TGTTCCCATGACATTCAAGGACATGAGCTGTGCCTGAGCCCAGCCTaGCCCCCAAGGCTGTCAAGGAGGATCGATGTTCCAGAGATAAGA +
Preference number: 1 (lower is better)
Translates to: CSHDIQGHELCLSPA*PPRLSRRIDVPEIR
Trigger: TCTTATCTCTGGAACATCGATCCTCCTTGACAGCCTTGGGGGTCAGGCTGGGCTCAGGCACAGCTCATGTCCTTGAATGTCATGGGAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp GAGCTCCTTTGTGCGACAGAGCTGCATGAAGCTGTGGAGAGCACCTaGATATTAACAAAGGGCAGCTGCAAAGCAGGCTTGCTTGGCTTC +
Preference number: 1 (lower is better)
Translates to: ELLCATELHEAVEST*ILTKGSCKAGLLGF
Trigger: GAAGCCAAGCAAGCCTGCTTTGCAGCTGCCCTTTGTTAATATCCAGGTGCTCTCCACAGCTTCATGCAGCTCTGTCGCACAAAGGAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp CGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTCTTaGAGAGGACTCTGGTTCCTTACCCTACACCTATATCATAGGATG +
Preference number: 1 (lower is better)
Translates to: RQTRKWRGGEETCLS*RGLWFLTLHLYHRM
Trigger: CATCCTATGATATAGGTGTAGGGTAAGGAACCAGAGTCCTCTGCAAGACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp GAGGTATTTCTCCTACATCCATGCCACCACATAGCAGATGAGGTATaGAGCCAGGCCTATTATGCTGGTCAGGTGAGGTGTGAGGCCAGA +
Preference number: 1 (lower is better)
Translates to: EVFLLHPCHHIADEV*SQAYYAGQVRCEAR
Trigger: TCTGGCCTCACACCTCACCTGACCAGCATAATAGGCCTGGCTCCATACCTCATCTGCTATGTGGTGGCATGGATGTAGGAGAAATACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp TCAATCTCCAACTGTCCAATGTCTGGGATCCAACTCACGATCTTCTaGGCTCCTTCAAGGGCTTGGGTCACTTCTCCAGCCATGCCCTTT +
Preference number: 1 (lower is better)
Translates to: SISNCPMSGIQLTIF*APSRAWVTSPAMPF
Trigger: AAAGGGCATGGCTGGAGAAGTGACCCAAGCCCTTGAAGGAGCCCAGAAGATCGTGAGTTGGATCCCAGACATTGGACAGTTGGAGATTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp AAGTGGAGGGGTGGTGAGGAGACCTGCTTGTCTTGCAGAGGACTCTaGTTCCTTACCCTACACCTATATCATAGGATGCATGACAGCTTG +
Preference number: 1 (lower is better)
Translates to: KWRGGEETCLSCRGL*FLTLHLYHRMHDSL
Trigger: CAAGCTGTCATGCATCCTATGATATAGGTGTAGGGTAAGGAACCAGAGTCCTCTGCAAGACAAGCAGGTCTCCTCACCACCCCTCCACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp CTTGCAGAGGACTCTGGTTCCTTACCCTACACCTATATCATAGGATaGATGACAGCTTGTAGCTCTAGTTCCTGGGGACCCAATGCTCTT +
Preference number: 1 (lower is better)
Translates to: LAEDSGSLPYTYIIG*MTACSSSSWGPNAL
Trigger: AAGAGCATTGGGTCCCCAGGAACTAGAGCTACAAGCTGTCATGCATCCTATGATATAGGTGTAGGGTAAGGAACCAGAGTCCTCTGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp TTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTaGTTGTCTTGCAGAGGACTCTGGTTCCTTACCCTACACCTATAT +
Preference number: 1 (lower is better)
Translates to: LHLRQTRKWRGGEET*LSCRGLWFLTLHLY
Trigger: ATATAGGTGTAGGGTAAGGAACCAGAGTCCTCTGCAAGACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp TTACCTACCAACAGCCAGGTAGGCCTTACTTGCTCTAAAAGAAACTaGCCGCTCTTTGCTCTCTCTGACTCTCTTCTTTCTCTGACCCCT +
Preference number: 1 (lower is better)
Translates to: LPTNSQVGLTCSKRN*PLFALSDSLLSLTP
Trigger: AGGGGTCAGAGAAAGAAGAGAGTCAGAGAGAGCAAAGAGCGGCCAGTTTCTTTTAGAGCAAGTAAGGCCTACCTGGCTGTTGGTAGGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp TATAGAAAAGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTaGGGAGACCTGCTTGTCTTGCAGAGGACTCTGGTTCCTTACCCT +
Preference number: 1 (lower is better)
Translates to: YRKVTFTSDKEVEGW*GDLLVLQRTLVPYP
Trigger: AGGGTAAGGAACCAGAGTCCTCTGCAAGACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACTTTTCTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp ACCTTTAGTCCTCGTACTTTGGAAGCAGAGGCTGGCAGATCACTGTaGGTTCTAGTCCAGGTTGTTCCACATAGCCAGTTCTATACGATC +
Preference number: 1 (lower is better)
Translates to: TFSPRTLEAEAGRSL*VLVQVVPHSQFYTI
Trigger: GATCGTATAGAACTGGCTATGTGGAACAACCTGGACTAGAACTCACAGTGATCTGCCAGCCTCTGCTTCCAAAGTACGAGGACTAAAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp AGTTGGGAGTTCTACGTCTTCATCCAAAAGCTACTAGTGGAAGACTaGCTTCCAGGTAACTGGGGTAAGAGTCTTAAGCCCACACCCACA +
Preference number: 1 (lower is better)
Translates to: SWEFYVFIQKLLVED*LPGNWGKSLKPTPT
Trigger: TGTGGGTGTGGGCTTAAGACTCTTACCCCAGTTACCTGGAAGTCAGTCTTCCACTAGTAGCTTTTGGATGAAGACGTAGAACTCCCAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp CTGCATGAAGCTGTGGAGAGCACCTGGATATTAACAAAGGGCAGCTaGAAAGCAGGCTTGCTTGGCTTCAGTCACTCATTGATTCATTTT +
Preference number: 1 (lower is better)
Translates to: LHEAVESTWILTKGS*KAGLLGFSHSLIHF
Trigger: AAAATGAATCAATGAGTGACTGAAGCCAAGCAAGCCTGCTTTGCAGCTGCCCTTTGTTAATATCCAGGTGCTCTCCACAGCTTCATGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp CATTGCAAAGACTGCAGTTGTCAGCGTCACTCTGTCAGAAAAGTGTaGAGTGTCTTGGCCCATGAAGTGCAGCTTTCTTCTTCCATAGTT +
Preference number: 1 (lower is better)
Translates to: HCKDCSCQRHSVRKV*SVLAHEVQLSSSIV
Trigger: AACTATGGAAGAAGAAAGCTGCACTTCATGGGCCAAGACACTGCACACTTTTCTGACAGAGTGACGCTGACAACTGCAGTCTTTGCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp CTTCCAAGCTCCTACACAACATCTGACAGAGCTCTTAACACTGAATaGATCTTCTATCCCAAAGTTCCAAAGTCCTTCCACAGTCCTCCC +
Preference number: 1 (lower is better)
Translates to: LPSSYTTSDRALNTE*IFYPKVPKSFHSPP
Trigger: GGGAGGACTGTGGAAGGACTTTGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTAGGAGCTTGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp ACTCTTACACATTACCAAGTCCAGCCACAGCACAAGGTACAACCTTaGCTATCTCTGGAACACAGCCTCTGTGCTTTCAGAAAACACTTC +
Preference number: 1 (lower is better)
Translates to: TLTHYQVQPQHKVQP*LSLEHSLCAFRKHF
Trigger: GAAGTGTTTTCTGAAAGCACAGAGGCTGTGTTCCAGAGATAGCCAAGGTTGTACCTTGTGCTGTGGCTGGACTTGGTAATGTGTAAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp GTTCAGAACAACCTCTGTAACTTCAGTCAGTCACTGGGTGTGGGATaGTTTATTCAAGCCTTGAAAGGCACAGGGTATGCATGTGCTACA +
Preference number: 1 (lower is better)
Translates to: VQNNLCNFSQSLGVG*FIQALKGTGYACAT
Trigger: TGTAGCACATGCATACCCTGTGCCTTTCAAGGCTTGAATAAATCATCCCACACCCAGTGACTGACTGAAGTTACAGAGGTTGTTCTGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp TCTCAGCTTGCTTCTTTATATAAGGCATTGCTAGATACCCAGGGTTaGGAATTATCCAGTAAGAGCTGCACCCTCCCATATCAACCATTG +
Preference number: 1 (lower is better)
Translates to: SQLASLYKALLDTQG*ELSSKSCTLPYQPL
Trigger: CAATGGTTGATATGGGAGGGTGCAGCTCTTACTGGATAATTCCCAACCCTGGGTATCTAGCAATGCCTTATATAAAGAAGCAAGCTGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp ACAGTATACCCTTTTGCCCAAACAGCTTTACTTAGAAATGTTCGTTaGAATGAGTCATTGGTCTGGTTGAGGCCTCTGACTTCTGCTACA +
Preference number: 1 (lower is better)
Translates to: TVYPFAQTALLRNVR*NESLVWLRPLTSAT
Trigger: TGTAGCAGAAGTCAGAGGCCTCAACCAGACCAATGACTCATTGCAACGAACATTTCTAAGTAAAGCTGTTTGGGCAAAAGGGTATACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp GTCTGTCTCTTGACACAGAAACTCAGAGGAATGGCTATCTCACAATaGCTCTCTCAGCTTGCTTCTTTATATAAGGCATTGCTAGATACC +
Preference number: 1 (lower is better)
Translates to: VCLLTQKLRGMAISQ*LSQLASLYKALLDT
Trigger: GGTATCTAGCAATGCCTTATATAAAGAAGCAAGCTGAGAGAGCCATTGTGAGATAGCCATTCCTCTGAGTTTCTGTGTCAAGAGACAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp ATCCTAAGTTTGTCTGTTGCTGAACATGGAGACAGAAATGCTTCTTaGATTTGTGGGGTGACAGCCAGTAGTCTTGTTCCCAATCTTTCT +
Preference number: 1 (lower is better)
Translates to: ILSLSVAEHGDRNAS*ICGVTASSLVPNLS
Trigger: AGAAAGATTGGGAACAAGACTACTGGCTGTCACCCCACAAATTCAAGAAGCATTTCTGTCTCCATGTTCAGCAACAGACAAACTTAGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp GTGGTAAACCAGTTTTACAAATCCTTGTTAGTCCCATTTTCTCAGTaGTGGAGCATTGTCTGGTCTTCCAGAGAAGACAGGTTCATTTCT +
Preference number: 1 (lower is better)
Translates to: VVNQFYKSLLVPFSQ*WSIVWSSREDRFIS
Trigger: AGAAATGAACCTGTCTTCTCTGGAAGACCAGACAATGCTCCAGCACTGAGAAAATGGGACTAACAAGGATTTGTAAAACTGGTTTACCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp TACAAATCCTTGTTAGTCCCATTTTCTCAGTGCTGGAGCATTGTCTaGTCTTCCAGAGAAGACAGGTTCATTTCTAGCAATCAGACATTG +
Preference number: 1 (lower is better)
Translates to: YKSLLVPFSQCWSIV*SSREDRFISSNQTL
Trigger: CAATGTCTGATTGCTAGAAATGAACCTGTCTTCTCTGGAAGACCAGACAATGCTCCAGCACTGAGAAAATGGGACTAACAAGGATTTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp GTAAACCAGTTTTACAAATCCTTGTTAGTCCCATTTTCTCAGTGCTaGAGCATTGTCTGGTCTTCCAGAGAAGACAGGTTCATTTCTAGC +
Preference number: 1 (lower is better)
Translates to: VNQFYKSLLVPFSQC*SIVWSSREDRFISS
Trigger: GCTAGAAATGAACCTGTCTTCTCTGGAAGACCAGACAATGCTCCAGCACTGAGAAAATGGGACTAACAAGGATTTGTAAAACTGGTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 90 bp GCACCTCAGCCTAATAAACGAGACCTTGATAGGTTGATATCTACTTaGTCCTCCGACTTTCTTTCTTTTATTCCCATTTCCTTCCAGGTT +
Preference number: 1 (lower is better)
Translates to: APQPNKRDLDRLIST*SSDFLSFIPISFQV
Trigger: AACCTGGAAGGAAATGGGAATAAAAGAAAGAAAGTCGGAGGACCAAGTAGATATCAACCTATCAAGGTCTCGTTTATTAGGCTGAGGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp ATAACTCCAGTTGTGTCAAGTTGGCACAAAATTAGCCAGTACAATTaGCTCCTTGTCAACTTGACACACAAACACATTGTCAGAGACCAT +
Preference number: 1 (lower is better)
Translates to: ITPVVSSWHKISQYN*LLVNLTHKHIVRDH
Trigger: ATGGTCTCTGACAATGTGTTTGTGTGTCAAGTTGACAAGGAGTCAATTGTACTGGCTAATTTTGTGCCAACTTGACACAACTGGAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 90 bp TCAAATTGGCATGAAATTAAACCTGCTGATATATCCCGCATAATTTaGAGACAGGTTTTACACAGTATACCCTTTTGCCCAAACAGCTTT +
Preference number: 1 (lower is better)
Translates to: SNWHEIKPADISRII*RQVLHSIPFCPNSF
Trigger: AAAGCTGTTTGGGCAAAAGGGTATACTGTGTAAAACCTGTCTGCAAATTATGCGGGATATATCAGCAGGTTTAATTTCATGCCAATTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 90 bp CTTTATGTTCTTACATCACTTCCTTTTGAGTCAAATGACACAGACTaGTTTAGAAGGTGCTTGATTTGCCTGTTTCTGGTTCTTTCAAAC +
Preference number: 1 (lower is better)
Translates to: LYVLTSLPFESNDTD*FRRCLICLFLVLSN
Trigger: GTTTGAAAGAACCAGAAACAGGCAAATCAAGCACCTTCTAAATCAGTCTGTGTCATTTGACTCAAAAGGAAGTGATGTAAGAACATAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp CACTTGTTCCAAGGGCCAGCGTTCCCACATTGCTCAGGTGAGGGGTaGGGACAGCTCTCTGGTGCACTCTTCCTCTGCGCTAGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: HLFQGPAFPHCSGEG*GQLSGALFLCASSP
Trigger: GGGAGAGCTAGCGCAGAGGAAGAGTGCACCAGAGAGCTGTCCCAACCCCTCACCTGAGCAATGTGGGAACGCTGGCCCTTGGAACAAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp GCTGACAAGCTGTCTTGCACCCACCCCACCAGAGCCACCTCTACCTaGCTGCCTAGGAGAAGGGCAGGGATAGATCTCCTGAGTCTGGTG +
Preference number: 2 (lower is better)
Translates to: ADKLSCTHPTRATST*LPRRRAGIDLLSLV
Trigger: CACCAGACTCAGGAGATCTATCCCTGCCCTTCTCCTAGGCAGCAAGGTAGAGGTGGCTCTGGTGGGGTGGGTGCAAGACAGCTTGTCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTGAAGTGGAGGGGTGGTaGGGAGACCTGCTTGTCTTG +
Preference number: 2 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFEVEGW*GDLLVL
Trigger: CAAGACAAGCAGGTCTCCTCACCACCCCTCCACTTC...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGCCTGAGTCTGGTGACTaGCAAGAGGTGGGGGCAGCT +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMPESGD*QEVGAA
Trigger: AGCTGCCCCCACCTCTTGCCAGTCACCAGACTCAGG...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTCGTCAGACAAGGAAGTaGAGGGGTGGTGAGGAGACC +
Preference number: 2 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPARQTRK*RGGEET
Trigger: GGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACG...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTGTCCCATTTTCTCAGTaGTGGAGCATTGTCTGGTCT +
Preference number: 2 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFVPFSQ*WSIVWS
Trigger: AGACCAGACAATGCTCCAGCACTGAGAAAATGGGAC...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGGGTGGTGAGGAGACCTaGTTGTCTTGCAGAGGACTC +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMGGEET*LSCRGL
Trigger: GAGTCCTCTGCAAGACAAGCAGGTCTCCTCACCACC...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGGCTGGCAGATCACTGTaGGTTCTAGTCCAGGTTGTT +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMAGRSL*VLVQVV
Trigger: AACAACCTGGACTAGAACTCACAGTGATCTGCCAGC...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTTTTGTGCGACAGAGCTaGATGAAGCTGTGGAGAGCA +
Preference number: 2 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPAFVRQS*MKLWRA
Trigger: TGCTCTCCACAGCTTCATGCAGCTCTGTCGCACAAA...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCCCTGCTGAAGGTGAGTaGTGGGTCAGGCTACCAGGG +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFPAEGE*WVRLPG
Trigger: CCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGG...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGTGGCACAGGCAGAGTTaGGAGTTCTACGTCTTCATC +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMWHRQS*EFYVFI
Trigger: GATGAAGACGTAGAACTCCCAACTCTGCCTGTGCCA...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp CTGCCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTaGCACCTAAGAACTGGCCACTCTTTGCTCTCTCTAGGAGGCAGG +
Preference number: 2 (lower is better)
Translates to: LPYRPQEARNYNNTV*HLRTGHSLLSLGGR
Trigger: CCTGCCTCCTAGAGAGAGCAAAGAGTGGCCAGTTCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTACACCTGTACAAATGTaGCATATACCCACAAAGACA +
Preference number: 2 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFTPVQM*HIPTKT
Trigger: TGTCTTTGTGGGTATATGTCACATTTGTACAGGTGT...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAGAAGTGGAGGGGTGGTaGGGAGACCTGCTTGTCTTG +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLREVEGW*GDLLVL
Trigger: CAAGACAAGCAGGTCTCCTCACCACCCCTCCACTTC...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTCAGGTAGGCCTTACTTaGTCTAAAAGAAACTGGCCG +
Preference number: 2 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPAQVGLT*SKRNWP
Trigger: CGGCCAGTTTCTTTTAGAGCAAGTAAGGCCTACCTG...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGTTTGGAAGCAGAGGCTaGCAGATCACTGTGAGTTCT +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMFGSRG*QITVSS
Trigger: AGAACTCACAGTGATCTGCCAGCCTCTGCTTCCAAA...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGTCCAACAAACTCAGGTaGTCATGTACTCAGGTGATC +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMSNKLR*SCTQVI
Trigger: GATCACCTGAGTACATGATCACCTGAGTTTGTTGGA...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp GTTGAAAGGAGTGGAGAGAATGTATGGACCAGGGGAGTATCAGACTTTTGTGATGGTGGTGAGGAGACCTaGTTGTCTTGCAGAGGACTC +
Preference number: 2 (lower is better)
Translates to: VERSGENVWTRGVSDFCDGGEET*LSCRGL
Trigger: GAGTCCTCTGCAAGACAAGCAGGTCTCCTCACCACC...ATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGTTATCCAGTAAGAGCTaGACCCTCCCATATCAACCA +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMLSSKS*TLPYQP
Trigger: TGGTTGATATGGGAGGGTGCAGCTCTTACTGGATAA...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTGTCAGTCACTGGGTGTaGGATGATTTATTCAAGCCT +
Preference number: 2 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPAVSHWV*DDLFKP
Trigger: AGGCTTGAATAAATCATCCCACACCCAGTGACTGAC...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTGAAAGGCACAGGGTATaGATGTGCTACACAGTTATA +
Preference number: 2 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPAERHRV*MCYTVI
Trigger: TATAACTGTGTAGCACATGCATACCCTGTGCCTTTC...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACCACCTCTACCTTGCTaGCTAGGAGAAGGGCAGGGA +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPPPLPC*LGEGQG
Trigger: TCCCTGCCCTTCTCCTAGGCAGCAAGGTAGAGGTGG...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTGTCAGTCACTGGGTGTaGGATGATTTATTCAAGCCT +
Preference number: 2 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACVSHWV*DDLFKP
Trigger: AGGCTTGAATAAATCATCCCACACCCAGTGACTGAC...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGACTTCAGTCAGTCACTaGGTGTGGGATGATTTATTC +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMTSVSH*VWDDLF
Trigger: GAATAAATCATCCCACACCCAGTGACTGACTGAAGT...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACGTCAGACAAGGAAGTaGAGGGGTGGTGAGGAGACC +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPRQTRK*RGGEET
Trigger: GGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACG...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp GACTCTTACACATTACCAAGTCCAGCCACAGCACAAGGTACAACCTaGGCTATCTCTGGAACACAGCCTCTGTGCTTTCAGAAAACACTT +
Preference number: 2 (lower is better)
Translates to: DSYTLPSPATAQGTT*AISGTQPLCFQKTL
Trigger: AAGTGTTTTCTGAAAGCACAGAGGCTGTGTTCCAGAGATAGCCAAGGTTGTACCTTGTGCTGTGGCTGGACTTGGTAATGTGTAAGAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTTGCGACAGAGCTGCATaGAGCTGTGGAGAGCACCTG +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVCDRAA*SCGEHL
Trigger: CAGGTGCTCTCCACAGCTTCATGCAGCTCTGTCGCA...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGACAGTGTCTTGGCCCATaGAGTGCAGCTTTCTTCTTC +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRQCLGP*SAAFFF
Trigger: GAAGAAGAAAGCTGCACTTCATGGGCCAAGACACTG...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp GTTGAAAGGAGTGGAGAGAATGTATGGACCAGGGGAGTATCAGACTTTTGTGATTTAACAAAGGGCAGCTaGAAAGCAGGCTTGCTTGGC +
Preference number: 2 (lower is better)
Translates to: VERSGENVWTRGVSDFCDLTKGS*KAGLLG
Trigger: GCCAAGCAAGCCTGCTTTGCAGCTGCCCTTTGTTAA...ATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCTTTGTGCGACAGAGCTaGATGAAGCTGTGGAGAGCA +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFFVRQS*MKLWRA
Trigger: TGCTCTCCACAGCTTCATGCAGCTCTGTCGCACAAA...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCAATGGACTAAAGGGCTaGCAGTTCTCCTCACTGGGA +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFNGLKG*QFSSLG
Trigger: TCCCAGTGAGGAGAACTGGCAGCCCTTTAGTCCATT...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTCTAGCAATCAGACATTaGTTCAGAACAACCTCTGTA +
Preference number: 2 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPALAIRH*FRTTSV
Trigger: TACAGAGGTTGTTCTGAACCAATGTCTGATTGCTAG...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GTTGAAAGGAGTGGAGAGAATGTATGGACCAGGGGAGTATCAGACTTTTGTGATTGCTGGAGCATTGTCTaGTCTTCCAGAGAAGACAGG +
Preference number: 2 (lower is better)
Translates to: VERSGENVWTRGVSDFCDCWSIV*SSREDR
Trigger: CCTGTCTTCTCTGGAAGACCAGACAATGCTCCAGCA...ATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACCCTCCTGCAGGAGGTaGAAGTGGGTGATTATGGAG +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPPSCRR*KWVIME
Trigger: CTCCATAATCACCCACTTCCACCTCCTGCAGGAGGG...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTGTTGGGACAGCTCTCTaGTGCACTCTTCCTCTGCGC +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVVGTAL*CTLPLR
Trigger: GCGCAGAGGAAGAGTGCACCAGAGAGCTGTCCCAAC...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp GCTATCTCACAATGGCTCTCTCAGCTTGCTTCTTTATATAAGGCATaGCTAGATACCCAGGGTTGGGAATTATCCAGTAAGAGCTGCACC +
Preference number: 2 (lower is better)
Translates to: AISQWLSQLASLYKA*LDTQGWELSSKSCT
Trigger: GGTGCAGCTCTTACTGGATAATTCCCAACCCTGGGTATCTAGCAATGCCTTATATAAAGAAGCAAGCTGAGAGAGCCATTGTGAGATAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGTCAAATGACACAGACTaGTTTAGAAGGTGCTTGATT +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMSNDTD*FRRCLI
Trigger: AATCAAGCACCTTCTAAATCAGTCTGTGTCATTTGA...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAAGAGGAATAGGAAGTTaGAGGAAGACGGAGCACAAC +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRRGIGS*RKTEHN
Trigger: GTTGTGCTCCGTCTTCCTTCAACTTCCTATTCCTCT...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACCACATAGCAGATaGGGTATGGAGCCAGGCCTA +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVPPHSR*GMEPGL
Trigger: TAGGCCTGGCTCCATACCTCATCTGCTATGTGGTGG...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp GCTACCAGGGTAAAGCTTCCCAGTTTGTATTTGTACTTTAGGAATCCTCTGGTTGAGACCTGCTTGTCTTaGAGAGGACTCTGGTTCCTT +
Preference number: 2 (lower is better)
Translates to: ATRVKLPSLYLYFRNPLVETCLS*RGLWFL
Trigger: AAGGAACCAGAGTCCTCTGCAAGACAAGCAGGTCTC...AACCAGAGGATTCCTAAAGTACAAATACAAACTGGGAAGCTTTACCCTGGTAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGATATCCCGCATAATTTaGAGACAGGTTTTACACAGT +
Preference number: 2 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMISRII*RQVLHS
Trigger: ACTGTGTAAAACCTGTCTGCAAATTATGCGGGATAT...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCAAGTGTGCAGTGTCTTaGCCCATGAAGTGCAGCTTT +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFKCAVS*PMKCSF
Trigger: AAAGCTGCACTTCATGGGCCAAGACACTGCACACTT...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGATTAGTCCTCGTACTTTaGAAGCAGAGGCTGGCAGAT +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRLVLVL*KQRLAD
Trigger: ATCTGCCAGCCTCTGCTTCCAAAGTACGAGGACTAA...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGCAGTGTCTTGGCCCATaGAGTGCAGCTTTCTTCTTC +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLQCLGP*SAAFFF
Trigger: GAAGAAGAAAGCTGCACTTCATGGGCCAAGACACTG...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCAAGAGCTTGGCAAAAATaGCCACCTTGCCATGTAGGG +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPRAWQK*PPCHVG
Trigger: CCCTACATGGCAAGGTGGTCATTTTTGCCAAGCTCT...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGATCTGTCAGAAAAGTGTaGAGTGTCTTGGCCCATGAA +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRSVRKV*SVLAHE
Trigger: TTCATGGGCCAAGACACTGCACACTTTTCTGACAGA...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTTGTGACTGGTACATTTaGCTTCTATTGACTGAATTC +
Preference number: 2 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACCDWYI*LLLTEF
Trigger: GAATTCAGTCAATAGAAGCCAAATGTACCAGTCACA...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGATGCTCTAAAAGAAACTaGCCGCTCTTTGCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRCSKRN*PLFALS
Trigger: AGAGAGAGCAAAGAGCGGCCAGTTTCTTTTAGAGCA...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp TATTTGTACTTTAGGAATCCTCTGGTTCTCAACTTCAAGGCAGCATaGCAAAGACTGCAGTTGTCAGCGTCACTCTGTCAGAAAAGTGTG +
Preference number: 2 (lower is better)
Translates to: YLYFRNPLVLNFKAA*QRLQLSASLCQKSV
Trigger: CACACTTTTCTGACAGAGTGACGCTGACAACTGCAGTCTTTGCAATGCTGCCTTGAAGTTGAGAACCAGAGGATTCCTAAAGTACAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCAGTGAGGCCAGAAATCTaGAGTGTGATAGCTGACAAG +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPVRPEI*SVIADK
Trigger: CTTGTCAGCTATCACACTTCAGATTTCTGGCCTCAC...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTGGAGGTGGAAGTGGGTaGTTATGGAGGTATTTCTCC +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVGGGSG*LWRYFS
Trigger: GGAGAAATACCTCCATAATCACCCACTTCCACCTCC...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTGTTTTGTGTACACAGTaGCATCAAGCAAAATATAGA +
Preference number: 2 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACVLCTQ*HQAKYR
Trigger: TCTATATTTTGCTTGATGGCACTGTGTACACAAAAC...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTGAGACCTGCTTGTCTTaGAGAGGACTCTGGTTCCTT +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVETCLS*RGLWFL
Trigger: AAGGAACCAGAGTCCTCTGCAAGACAAGCAGGTCTC...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGTTAGTCCTCGTACTTTaGAAGCAGAGGCTGGCAGAT +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLLVLVL*KQRLAD
Trigger: ATCTGCCAGCCTCTGCTTCCAAAGTACGAGGACTAA...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTTGGCACAGGCAGAGTTaGGAGTTCTACGTCTTCATC +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVWHRQS*EFYVFI
Trigger: GATGAAGACGTAGAACTCCCAACTCTGCCTGTGCCA...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp GTGGAGAGCACCTGGATATTAACAAAGGGCAGCTGCAAAGCAGGCTaGCTTGGCTTCAGTCACTCATTGATTCATTTTGAAAAATACAAA +
Preference number: 2 (lower is better)
Translates to: VESTWILTKGSCKAG*LGFSHSLIHFEKYK
Trigger: TTTGTATTTTTCAAAATGAATCAATGAGTGACTGAAGCCAAGCAAGCCTGCTTTGCAGCTGCCCTTTGTTAATATCCAGGTGCTCTCCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp GTTGAAAGGAGTGGAGAGAATGTATGGACCAGGGGAGTATCAGACTTTTGTGATACACCTGTACAAATGTaGCATATACCCACAAAGACA +
Preference number: 2 (lower is better)
Translates to: VERSGENVWTRGVSDFCDTPVQM*HIPTKT
Trigger: TGTCTTTGTGGGTATATGTCACATTTGTACAGGTGT...ATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCAATAAGAGAGCATGTTaGAAGGAGTGGAGAGAATGT +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFNKRAC*KEWREC
Trigger: ACATTCTCTCCACTCCTTTCAACATGCTCTCTTATT...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAAATAAGAGAGCATGTTaGAAGGAGTGGAGAGAATGT +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRNKRAC*KEWREC
Trigger: ACATTCTCTCCACTCCTTTCAACATGCTCTCTTATT...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGTCCAACAAACTCAGGTaGTCATGTACTCAGGTGATC +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLSNKLR*SCTQVI
Trigger: GATCACCTGAGTACATGATCACCTGAGTTTGTTGGA...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp AGGTTAAGCACACCTTTCTTCACACCTTCTTTATGTTCTTACATCACTTCCTTTTTAACAAAGGGCAGCTaGAAAGCAGGCTTGCTTGGC +
Preference number: 2 (lower is better)
Translates to: RLSTPFFTPSLCSYITSFLTKGS*KAGLLG
Trigger: GCCAAGCAAGCCTGCTTTGCAGCTGCCCTTTGTTAA...AAAGGAAGTGATGTAAGAACATAAAGAAGGTGTGAAGAAAGGTGTGCTTAACCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCACATGGAGACAGAAATaGTTCTTGAATTTGTGGGGT +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFTWRQK*FLNLWG
Trigger: ACCCCACAAATTCAAGAAGCATTTCTGTCTCCATGT...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCCTAGCAATCAGACATTaGTTCAGAACAACCTCTGTA +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFLAIRH*FRTTSV
Trigger: TACAGAGGTTGTTCTGAACCAATGTCTGATTGCTAG...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AGGTTAAGCACACCTTTCTTCACACCTTCTTTATGTTCTTACATCACTTCCTTTTGCTGGAGCATTGTCTaGTCTTCCAGAGAAGACAGG +
Preference number: 2 (lower is better)
Translates to: RLSTPFFTPSLCSYITSFCWSIV*SSREDR
Trigger: CCTGTCTTCTCTGGAAGACCAGACAATGCTCCAGCA...AAAGGAAGTGATGTAAGAACATAAAGAAGGTGTGAAGAAAGGTGTGCTTAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCATTTTCTCAGTGCTaGAGCATTGTCTGGTCTTCC +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVPFSQC*SIVWSS
Trigger: GGAAGACCAGACAATGCTCCAGCACTGAGAAAATGG...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GTTGAAAGGAGTGGAGAGAATGTATGGACCAGGGGAGTATCAGACTTTTGTGATAGCTATGGAATTTCTTaGGCTAACATGATCAGAGCA +
Preference number: 2 (lower is better)
Translates to: VERSGENVWTRGVSDFCDSYGIS*ANMIRA
Trigger: TGCTCTGATCATGTTAGCCCAAGAAATTCCATAGCT...ATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAAGCTATGGAATTTCTTaGGCTAACATGATCAGAGCA +
Preference number: 2 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRSYGIS*ANMIRA
Trigger: TGCTCTGATCATGTTAGCCCAAGAAATTCCATAGCT...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACAAAGCAGGCTTGCTTaGCTTCAGTCACTCATTGAT +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPQSRLA*LQSLID
Trigger: ATCAATGAGTGACTGAAGCCAAGCAAGCCTGCTTTG...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTAAGTGTGCAGTGTCTTaGCCCATGAAGTGCAGCTTT +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVKCAVS*PMKCSF
Trigger: AAAGCTGCACTTCATGGGCCAAGACACTGCACACTT...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp TTTGCCCAAACAGCTTTACTTAGAAATGTTCGTTGCAATGAGTCATaGGTCTGGTTGAGGCCTCTGACTTCTGCTACAGTATTAATACTG +
Preference number: 2 (lower is better)
Translates to: FAQTALLRNVRCNES*VWLRPLTSATVLIL
Trigger: CAGTATTAATACTGTAGCAGAAGTCAGAGGCCTCAACCAGACCAATGACTCATTGCAACGAACATTTCTAAGTAAAGCTGTTTGGGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCAGATTTATTCAAGCCTTaGAAGGCACAGGGTATGCAT +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPDLFKP*KAQGMH
Trigger: ATGCATACCCTGTGCCTTTCAAGGCTTGAATAAATC...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCAGATTTAGAAGGTGCTTaGTTTGCCTGTTTCTGGTTC +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPDLEGA*FACFWF
Trigger: GAACCAGAAACAGGCAAATCAAGCACCTTCTAAATC...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCTCAAATGACACAGACTaGTTTAGAAGGTGCTTGATT +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFSNDTD*FRRCLI
Trigger: AATCAAGCACCTTCTAAATCAGTCTGTGTCATTTGA...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGGAAAGGCACAGGGTATaGATGTGCTACACAGTTATA +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLERHRV*MCYTVI
Trigger: TATAACTGTGTAGCACATGCATACCCTGTGCCTTTC...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCATGCTTTAGATTTTTCTaGCCTATAGGCCTCAGGAAG +
Preference number: 2 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPCFRFF*PIGLRK
Trigger: CTTCCTGAGGCCTATAGGGCAGAAAAATCTAAAGCA...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AGGTTAAGCACACCTTTCTTCACACCTTCTTTATGTTCTTACATCACTTCCTTTCCATTTTCTCAGTGCTaGAGCATTGTCTGGTCTTCC +
Preference number: 2 (lower is better)
Translates to: RLSTPFFTPSLCSYITSFPFSQC*SIVWSS
Trigger: GGAAGACCAGACAATGCTCCAGCACTGAGAAAATGG...AAAGGAAGTGATGTAAGAACATAAAGAAGGTGTGAAGAAAGGTGTGCTTAACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTTGCTCTAAAAGAAACTaGCCGCTCTTTGCTCTCTCT +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVCSKRN*PLFALS
Trigger: AGAGAGAGCAAAGAGCGGCCAGTTTCTTTTAGAGCA...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTTGCAGGAGGTGGAAGTaGGTGATTATGGAGGTATTT +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVCRRWK*VIMEVF
Trigger: AAATACCTCCATAATCACCCACTTCCACCTCCTGCA...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCTAGATACCCAGGGTTaGGAATTATCCAGTAAGAGC +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVLDTQG*ELSSKS
Trigger: GCTCTTACTGGATAATTCCCAACCCTGGGTATCTAG...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGCTCAGATCAAGGGTGTaGAACAATAAGAAGATTGTC +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLLRSRV*NNKKIV
Trigger: GACAATCTTCTTATTGTTTCACACCCTTGATCTGAG...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCATCCATTTAAAAGAGTaGCAAATCGAGAATGAGATG +
Preference number: 2 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFIHLKE*QIENEM
Trigger: CATCTCATTCTCGATTTGCCACTCTTTTAAATGGAT...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GTTGAAAGGAGTGGAGAGAATGTATGGACCAGGGGAGTATCAGACTTTTGTGATTTTAAGTTCTGTGACTaGTACATTTGGCTTCTATTG +
Preference number: 2 (lower is better)
Translates to: VERSGENVWTRGVSDFCDFKFCD*YIWLLL
Trigger: CAATAGAAGCCAAATGTACCAGTCACAGAACTTAAA...ATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp AGGTTAAGCACACCTTTCTTCACACCTTCTTTATGTTCTTACATCACTTCCTTTCAAAGCAGGCTTGCTTaGCTTCAGTCACTCATTGAT +
Preference number: 2 (lower is better)
Translates to: RLSTPFFTPSLCSYITSFQSRLA*LQSLID
Trigger: ATCAATGAGTGACTGAAGCCAAGCAAGCCTGCTTTG...AAAGGAAGTGATGTAAGAACATAAAGAAGGTGTGAAGAAAGGTGTGCTTAACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGTGTAGTACAAAAGAATaGACTAAAGGGCTGCCAGTT +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLCSTKE*TKGLPV
Trigger: AACTGGCAGCCCTTTAGTCCATTCTTTTGTACTACA...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGAGTGAAAAGAAAAGGTaGGATGTGAGGTCTCAAAGA +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLSEKKR*DVRSQR
Trigger: TCTTTGAGACCTCACATCCCACCTTTTCTTTTCACT...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTACTCAGACATCAGCATaGCCTTTCATCTTCTACATC +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVTQTSA*PFIFYI
Trigger: GATGTAGAAGATGAAAGGCCATGCTGATGTCTGAGT...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp AGGTTAAGCACACCTTTCTTCACACCTTCTTTATGTTCTTACATCACTTCCTTTGATTTATTCAAGCCTTaGAAGGCACAGGGTATGCAT +
Preference number: 2 (lower is better)
Translates to: RLSTPFFTPSLCSYITSFDLFKP*KAQGMH
Trigger: ATGCATACCCTGTGCCTTTCAAGGCTTGAATAAATC...AAAGGAAGTGATGTAAGAACATAAAGAAGGTGTGAAGAAAGGTGTGCTTAACCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGCTATACGATCCATGGTaGAATAGTAAGACTCTGTTT +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLLYDPW*NSKTLF
Trigger: AAACAGAGTCTTACTATTTCACCATGGATCGTATAG...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTGAACAATTTCTCAATTaGGGTTCCTCTTTCTGGATG +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVEQFLN*GSSFWM
Trigger: CATCCAGAAAGAGGAACCTCAATTGAGAAATTGTTC...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp GCTACCAGGGTAAAGCTTCCCAGTTTGTATTTGTACTTTAGGAATCCTCTGGTTGTTTTGTGTACACAGTaGCATCAAGCAAAATATAGA +
Preference number: 2 (lower is better)
Translates to: ATRVKLPSLYLYFRNPLVVLCTQ*HQAKYR
Trigger: TCTATATTTTGCTTGATGGCACTGTGTACACAAAAC...AACCAGAGGATTCCTAAAGTACAAATACAAACTGGGAAGCTTTACCCTGGTAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGTGTGACTGGTACATTTaGCTTCTATTGACTGAATTC +
Preference number: 2 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLCDWYI*LLLTEF
Trigger: GAATTCAGTCAATAGAAGCCAAATGTACCAGTCACA...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp GCTACCAGGGTAAAGCTTCCCAGTTTGTATTTGTACTTTAGGAATCCTCTGGTTTTTAAGTTCTGTGACTaGTACATTTGGCTTCTATTG +
Preference number: 2 (lower is better)
Translates to: ATRVKLPSLYLYFRNPLVFKFCD*YIWLLL
Trigger: CAATAGAAGCCAAATGTACCAGTCACAGAACTTAAA...AACCAGAGGATTCCTAAAGTACAAATACAAACTGGGAAGCTTTACCCTGGTAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 90 bp TATATCCCGCATAATTTGCAGACAGGTTTTACACAGTATACCCTTTaGCCCAAACAGCTTTACTTAGAAATGTTCGTTGCAATGAGTCAT +
Preference number: 2 (lower is better)
Translates to: YIPHNLQTGFTQYTL*PKQLYLEMFVAMSH
Trigger: ATGACTCATTGCAACGAACATTTCTAAGTAAAGCTGTTTGGGCAAAAGGGTATACTGTGTAAAACCTGTCTGCAAATTATGCGGGATATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp AGGTTAAGCACACCTTTCTTCACACCTTCTTTATGTTCTTACATCACTTCCTTTCTCAGATCAAGGGTGTaGAACAATAAGAAGATTGTC +
Preference number: 2 (lower is better)
Translates to: RLSTPFFTPSLCSYITSFLRSRV*NNKKIV
Trigger: GACAATCTTCTTATTGTTTCACACCCTTGATCTGAG...AAAGGAAGTGATGTAAGAACATAAAGAAGGTGTGAAGAAAGGTGTGCTTAACCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR TCA 90 bp CTCTCTAGGAGGCAGGTAATGTTTGACTTTGGTTATTATTGCCTTTCAATTTTTGATTTAGAAGGTGCTTaGTTTGCCTGTTTCTGGTTC +
Preference number: 2 (lower is better)
Translates to: LSRRQVMFDFGYYCLSIFDLEGA*FACFWF
Trigger: GAACCAGAAACAGGCAAATCAAGCACCTTCTAAATC...AAAAATTGAAAGGCAATAATAACCAAAGTCAAACATTACCTGCCTCCTAGAGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCTGAAGATAAACACATaGTTAAAGTGCTATTTGGGT +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVLKINT*LKCYLG
Trigger: ACCCAAATAGCACTTTAAGCATGTGTTTATCTTCAG...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTATCCATTTAAAAGAGTaGCAAATCGAGAATGAGATG +
Preference number: 2 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVIHLKE*QIENEM
Trigger: CATCTCATTCTCGATTTGCCACTCTTTTAAATGGAT...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR GCA 90 bp AGGTTAAGCACACCTTTCTTCACACCTTCTTTATGTTCTTACATCACTTCCTTTCTGAAGATAAACACATaGTTAAAGTGCTATTTGGGT +
Preference number: 2 (lower is better)
Translates to: RLSTPFFTPSLCSYITSFLKINT*LKCYLG
Trigger: ACCCAAATAGCACTTTAAGCATGTGTTTATCTTCAG...AAAGGAAGTGATGTAAGAACATAAAGAAGGTGTGAAGAAAGGTGTGCTTAACCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp GGGATAGATCTCCTGAGTCTGGTGACTGGCAAGAGGTaGGGGCAGCTCTGCCACTGCATGCAAAGGGTAGGG +
Preference number: 3 (lower is better)
Translates to: GIDLLSLVTGKR*GQLCHCMQRVG
Trigger: CCCTACCCTTTGCATGCAGTGGCAGAGCTGCCCCCACCTCTTGCCAGTCACCAGACTCAGGAGATCTATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp GAGAAGGGCAGGGATAGATCTCCTGAGTCTGGTGACTaGCAAGAGGTGGGGGCAGCTCTGCCACTGCATGCA +
Preference number: 3 (lower is better)
Translates to: EKGRDRSPESGD*QEVGAALPLHA
Trigger: TGCATGCAGTGGCAGAGCTGCCCCCACCTCTTGCCAGTCACCAGACTCAGGAGATCTATCCCTGCCCTTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp TGGCCTCTCACAGTGCCGAGCCTCAGCTGCTCTTTGTaGCCCCTTCATGCCTTCAAAACCAGCACCACCTGG +
Preference number: 3 (lower is better)
Translates to: WPLTVPSLSCSL*PLHAFKTSTTW
Trigger: CCAGGTGGTGCTGGTTTTGAAGGCATGAAGGGGTCACAAAGAGCAGCTGAGGCTCGGCACTGTGAGAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp CTTGAGCACTTGTTCCAAGGGCCAGCGTTCCCACATTaGTCAGGTGAGGGGTTGGGACAGCTCTCTGGTGCA +
Preference number: 3 (lower is better)
Translates to: LEHLFQGPAFPH*SGEGLGQLSGA
Trigger: TGCACCAGAGAGCTGTCCCAACCCCTCACCTGAGCAATGTGGGAACGCTGGCCCTTGGAACAAGTGCTCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GACATTCAAGGACATGAGCTGTGCCTGAGCCCAGCCTaGCCCCCAAGGCTGTCAAGGAGGATCGATGTTCCA +
Preference number: 3 (lower is better)
Translates to: DIQGHELCLSPA*PPRLSRRIDVP
Trigger: TGGAACATCGATCCTCCTTGACAGCCTTGGGGGTCAGGCTGGGCTCAGGCACAGCTCATGTCCTTGAATGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp GATCGATGTTCCAGAGATAAGATCCAGAGTGCCCGCTaGTTGGCACCTGACTTCGGCCCCCATGTCAGCAGT +
Preference number: 3 (lower is better)
Translates to: DRCSRDKIQSAR*LAPDFGPHVSS
Trigger: ACTGCTGACATGGGGGCCGAAGTCAGGTGCCAAGCAGCGGGCACTCTGGATCTTATCTCTGGAACATCGATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GCGCTAGCTCTCCCTCCTGCAGGAGGTGGAAGTGGGTaGTTATGGAGGTATTTCTCCTACATCCATGCCACC +
Preference number: 3 (lower is better)
Translates to: ALALPPAGGGSG*LWRYFSYIHAT
Trigger: GGTGGCATGGATGTAGGAGAAATACCTCCATAATCACCCACTTCCACCTCCTGCAGGAGGGAGAGCTAGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTAAAGTGTGCAGTGTCTaGGCCCATGAAGTGCAGCTT +
Preference number: 3 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFKVCSV*AHEVQL
Trigger: AAGCTGCACTTCATGGGCCAAGACACTGCACACTTT...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp TCTGGTGCACTCTTCCTCTGCGCTAGCTCTCCCTCCTaGAGGAGGTGGAAGTGGGTGATTATGGAGGTATTT +
Preference number: 3 (lower is better)
Translates to: SGALFLCASSPS*RRWKWVIMEVF
Trigger: AAATACCTCCATAATCACCCACTTCCACCTCCTGCAGGAGGGAGAGCTAGCGCAGAGGAAGAGTGCACCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp CTCCAGATGCCTGTACTCCACTGCTGCTGCTCTTGGTaGTCATCTCATGGTACTGGCATCTCCAAAGCACTG +
Preference number: 3 (lower is better)
Translates to: LQMPVLHCCCSW*SSHGTGISKAL
Trigger: CAGTGCTTTGGAGATGCCAGTACCATGAGATGACCACCAAGAGCAGCAGCAGTGGAGTACAGGCATCTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp AACTGTCCAATGTCTGGGATCCAACTCACGATCTTCTaGGCTCCTTCAAGGGCTTGGGTCACTTCTCCAGCC +
Preference number: 3 (lower is better)
Translates to: NCPMSGIQLTIF*APSRAWVTSPA
Trigger: GGCTGGAGAAGTGACCCAAGCCCTTGAAGGAGCCCAGAAGATCGTGAGTTGGATCCCAGACATTGGACAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GACCCCTTCATGCCTTCAAAACCAGCACCACCTGGGTaGCTCTTACACATTACCAAGTCCAGCCACAGCACA +
Preference number: 3 (lower is better)
Translates to: DPFMPSKPAPPG*LLHITKSSHST
Trigger: TGTGCTGTGGCTGGACTTGGTAATGTGTAAGAGTCACCCAGGTGGTGCTGGTTTTGAAGGCATGAAGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp AGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTCTTaGAGAGGACTCTGGTTCCTTACCCTACACCTATAT +
Preference number: 3 (lower is better)
Translates to: RKWRGGEETCLS*RGLWFLTLHLY
Trigger: ATATAGGTGTAGGGTAAGGAACCAGAGTCCTCTGCAAGACAAGCAGGTCTCCTCACCACCCCTCCACTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp TGTGCGACAGAGCTGCATGAAGCTGTGGAGAGCACCTaGATATTAACAAAGGGCAGCTGCAAAGCAGGCTTG +
Preference number: 3 (lower is better)
Translates to: CATELHEAVEST*ILTKGSCKAGL
Trigger: CAAGCCTGCTTTGCAGCTGCCCTTTGTTAATATCCAGGTGCTCTCCACAGCTTCATGCAGCTCTGTCGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp ATCCAACTCACGATCTTCTGGGCTCCTTCAAGGGCTTaGGTCACTTCTCCAGCCATGCCCTTTGTAGCACAT +
Preference number: 3 (lower is better)
Translates to: IQLTIFWAPSRA*VTSPAMPFVAH
Trigger: ATGTGCTACAAAGGGCATGGCTGGAGAAGTGACCCAAGCCCTTGAAGGAGCCCAGAAGATCGTGAGTTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTCTCAGTGCTGGAGCATaGTCTGGTCTTCCAGAGAAG +
Preference number: 3 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPALSAGA*SGLPEK
Trigger: CTTCTCTGGAAGACCAGACAATGCTCCAGCACTGAG...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTTGCTTAAAGTGCTATTaGGGTATGTCTTACCCACAG +
Preference number: 3 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFCLKCY*GMSYPQ
Trigger: CTGTGGGTAAGACATACCCAAATAGCACTTTAAGCA...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp CCTCGTACTTTGGAAGCAGAGGCTGGCAGATCACTGTaGGTTCTAGTCCAGGTTGTTCCACATAGCCAGTTC +
Preference number: 3 (lower is better)
Translates to: PRTLEAEAGRSL*VLVQVVPHSQF
Trigger: GAACTGGCTATGTGGAACAACCTGGACTAGAACTCACAGTGATCTGCCAGCCTCTGCTTCCAAAGTACGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp GCTGTGGAGAGCACCTGGATATTAACAAAGGGCAGCTaGAAAGCAGGCTTGCTTGGCTTCAGTCACTCATTG +
Preference number: 3 (lower is better)
Translates to: AVESTWILTKGS*KAGLLGFSHSL
Trigger: CAATGAGTGACTGAAGCCAAGCAAGCCTGCTTTGCAGCTGCCCTTTGTTAATATCCAGGTGCTCTCCACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp ATGGCAGCATCCAGGCTGTCATGGCACAGGCAGAGTTaGGAGTTCTACGTCTTCATCCAAAAGCTACTAGTG +
Preference number: 3 (lower is better)
Translates to: MAASRLSWHRQS*EFYVFIQKLLV
Trigger: CACTAGTAGCTTTTGGATGAAGACGTAGAACTCCCAACTCTGCCTGTGCCATGACAGCCTGGATGCTGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GGTATTTCTCCTACATCCATGCCACCACATAGCAGATaGGGTATGGAGCCAGGCCTATTATGCTGGTCAGGT +
Preference number: 3 (lower is better)
Translates to: GISPTSMPPHSR*GMEPGLLCWSG
Trigger: ACCTGACCAGCATAATAGGCCTGGCTCCATACCTCATCTGCTATGTGGTGGCATGGATGTAGGAGAAATACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GTCATCTTAGAACCTGAGTCTGAGCCTGGTGAAAGCTaGGTTAGACATACCACCCACCCTCTTGAGCACTTG +
Preference number: 3 (lower is better)
Translates to: VILEPESEPGES*VRHTTHPLEHL
Trigger: CAAGTGCTCAAGAGGGTGGGTGGTATGTCTAACTCAGCTTTCACCAGGCTCAGACTCAGGTTCTAAGATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp GACTCTGGTTCCTTACCCTACACCTATATCATAGGATaGATGACAGCTTGTAGCTCTAGTTCCTGGGGACCC +
Preference number: 3 (lower is better)
Translates to: DSGSLPYTYIIG*MTACSSSSWGP
Trigger: GGGTCCCCAGGAACTAGAGCTACAAGCTGTCATGCATCCTATGATATAGGTGTAGGGTAAGGAACCAGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp CAGAATCATGTAGTACAAAAGAATGGACTAAAGGGCTaGCAGTTCTCCTCACTGGGAGGCCTGCTGAAGGTG +
Preference number: 3 (lower is better)
Translates to: QNHVVQKNGLKG*QFSSLGGLLKV
Trigger: CACCTTCAGCAGGCCTCCCAGTGAGGAGAACTGGCAGCCCTTTAGTCCATTCTTTTGTACTACATGATTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp AAGTGGGTGATTATGGAGGTATTTCTCCTACATCCATaGCACCACATAGCAGATGAGGTATGGAGCCAGGCC +
Preference number: 3 (lower is better)
Translates to: KWVIMEVFLLHP*HHIADEVWSQA
Trigger: GGCCTGGCTCCATACCTCATCTGCTATGTGGTGGCATGGATGTAGGAGAAATACCTCCATAATCACCCACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp CATTACCAAGTCCAGCCACAGCACAAGGTACAACCTTaGCTATCTCTGGAACACAGCCTCTGTGCTTTCAGA +
Preference number: 3 (lower is better)
Translates to: HYQVQPQHKVQP*LSLEHSLCAFR
Trigger: TCTGAAAGCACAGAGGCTGTGTTCCAGAGATAGCCAAGGTTGTACCTTGTGCTGTGGCTGGACTTGGTAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGTTTCTCTGTGTAGCCTaGTGTGTCCTAGACTTTGCT +
Preference number: 3 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMFLCVA*CVLDFA
Trigger: AGCAAAGTCTAGGACACACAAGGCTACACAGAGAAA...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GATCCTTTTAGAGCTCCTTTGTGCGACAGAGCTGCATaGAGCTGTGGAGAGCACCTGGATATTAACAAAGGG +
Preference number: 3 (lower is better)
Translates to: DPFRAPLCDRAA*SCGEHLDINKG
Trigger: CCCTTTGTTAATATCCAGGTGCTCTCCACAGCTTCATGCAGCTCTGTCGCACAAAGGAGCTCTAAAAGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTTCTAGCAATCAGACATaGGTTCAGAACAACCTCTGT +
Preference number: 3 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACSSNQT*VQNNLC
Trigger: ACAGAGGTTGTTCTGAACCAATGTCTGATTGCTAGA...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGTCACCAGGCTTCCTCTaGGATATATTATTTTTGTCC +
Preference number: 3 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMSPGFL*DILFLS
Trigger: GGACAAAAATAATATATCCAAGAGGAAGCCTGGTGA...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp TTAGGAATCCTCTGGTTCTCAACTTCAAGGCAGCATTaGAAAGACTGCAGTTGTCAGCGTCACTCTGTCAGA +
Preference number: 3 (lower is better)
Translates to: LGILWFSTSRQH*KDCSCQRHSVR
Trigger: TCTGACAGAGTGACGCTGACAACTGCAGTCTTTGCAATGCTGCCTTGAAGTTGAGAACCAGAGGATTCCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp CCTATAGAAAAGTTACATTTACGTCAGACAAGGAAGTaGAGGGGTGGTGAGGAGACCTGCTTGTCTTGCAGA +
Preference number: 3 (lower is better)
Translates to: PIEKLHLRQTRK*RGGEETCLSCR
Trigger: TCTGCAAGACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACTTTTCTATAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp AACAGCCAGGTAGGCCTTACTTGCTCTAAAAGAAACTaGCCGCTCTTTGCTCTCTCTGACTCTCTTCTTTCT +
Preference number: 3 (lower is better)
Translates to: NSQVGLTCSKRN*PLFALSDSLLS
Trigger: AGAAAGAAGAGAGTCAGAGAGAGCAAAGAGCGGCCAGTTTCTTTTAGAGCAAGTAAGGCCTACCTGGCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTTGCATGCTTACAATTTaGGTAGTGGTAAACCAGTTT +
Preference number: 3 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPACMLTI*VVVNQF
Trigger: AAACTGGTTTACCACTACCAAAATTGTAAGCATGCA...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTTTACATCACTTCCTTTaGAGTCAAATGACACAGACT +
Preference number: 3 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPALHHFL*SQMTQT
Trigger: AGTCTGTGTCATTTGACTCAAAAGGAAGTGATGTAA...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAGAGAGGAATAGGAAGTaGAAGGAAGACGGAGCACAA +
Preference number: 3 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRERNRK*KEDGAQ
Trigger: TTGTGCTCCGTCTTCCTTCAACTTCCTATTCCTCTC...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GTCAGTCACTGGGTGTGGGATGATTTATTCAAGCCTTaGAAGGCACAGGGTATGCATGTGCTACACAGTTAT +
Preference number: 3 (lower is better)
Translates to: VSHWVWDDLFKP*KAQGMHVLHSY
Trigger: ATAACTGTGTAGCACATGCATACCCTGTGCCTTTCAAGGCTTGAATAAATCATCCCACACCCAGTGACTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp AACCTCTGTAACTTCAGTCAGTCACTGGGTGTGGGATaGTTTATTCAAGCCTTGAAAGGCACAGGGTATGCA +
Preference number: 3 (lower is better)
Translates to: NLCNFSQSLGVG*FIQALKGTGYA
Trigger: TGCATACCCTGTGCCTTTCAAGGCTTGAATAAATCATCCCACACCCAGTGACTGACTGAAGTTACAGAGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp GTTTCCTCAAGAGTAGCTGCCTCCAACAAACTCAGGTaGTCATGTACTCAGGTGATCTCACTGATTGAACCT +
Preference number: 3 (lower is better)
Translates to: VSSRVAASNKLR*SCTQVISLIEP
Trigger: AGGTTCAATCAGTGAGATCACCTGAGTACATGATCACCTGAGTTTGTTGGAGGCAGCTACTCTTGAGGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp TTCTACGTCTTCATCCAAAAGCTACTAGTGGAAGACTaGCTTCCAGGTAACTGGGGTAAGAGTCTTAAGCCC +
Preference number: 3 (lower is better)
Translates to: FYVFIQKLLVED*LPGNWGKSLKP
Trigger: GGGCTTAAGACTCTTACCCCAGTTACCTGGAAGTCAGTCTTCCACTAGTAGCTTTTGGATGAAGACGTAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTCATGTCACTATCTTATaGTATGGATCCAATTTACGG +
Preference number: 3 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACHVTIL*YGSNLR
Trigger: CCGTAAATTGGATCCATACAATAAGATAGTGACATG...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAAACTTCAAGGCAGCATaGCAAAGACTGCAGTTGTCA +
Preference number: 3 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRNFKAA*QRLQLS
Trigger: TGACAACTGCAGTCTTTGCAATGCTGCCTTGAAGTT...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAAGACAGAAATGCTTCTaGAATTTGTGGGGTGACAGC +
Preference number: 3 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRRQKCF*NLWGDS
Trigger: GCTGTCACCCCACAAATTCAAGAAGCATTTCTGTCT...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp CCTTTTGCCCAAACAGCTTTACTTAGAAATGTTCGTTaGAATGAGTCATTGGTCTGGTTGAGGCCTCTGACT +
Preference number: 3 (lower is better)
Translates to: PFAQTALLRNVR*NESLVWLRPLT
Trigger: AGTCAGAGGCCTCAACCAGACCAATGACTCATTGCAACGAACATTTCTAAGTAAAGCTGTTTGGGCAAAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp ATAAGAGAGCATGTTGAAAGGAGTGGAGAGAATGTATaGACCAGGGGAGTATCAGACTTTTGTGATGGACCT +
Preference number: 3 (lower is better)
Translates to: IREHVERSGENV*TRGVSDFCDGP
Trigger: AGGTCCATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAACATGCTCTCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp GCAAGCTCAGCTCAGTGTAGTACTCAGACATCAGCATaGCCTTTCATCTTCTACATCCTAGTTGTTATTACG +
Preference number: 3 (lower is better)
Translates to: ASSAQCSTQTSA*PFIFYILVVIT
Trigger: CGTAATAACAACTAGGATGTAGAAGATGAAAGGCCATGCTGATGTCTGAGTACTACACTGAGCTGAGCTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp GCTTCTTTATATAAGGCATTGCTAGATACCCAGGGTTaGGAATTATCCAGTAAGAGCTGCACCCTCCCATAT +
Preference number: 3 (lower is better)
Translates to: ASLYKALLDTQG*ELSSKSCTLPY
Trigger: ATATGGGAGGGTGCAGCTCTTACTGGATAATTCCCAACCCTGGGTATCTAGCAATGCCTTATATAAAGAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp TCAAAAGCAAAAATCAATCTCCAACTGTCCAATGTCTaGGATCCAACTCACGATCTTCTGGGCTCCTTCAAG +
Preference number: 3 (lower is better)
Translates to: SKAKINLQLSNV*DPTHDLLGSFK
Trigger: CTTGAAGGAGCCCAGAAGATCGTGAGTTGGATCCCAGACATTGGACAGTTGGAGATTGATTTTTGCTTTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp TCACTCTGTCAGAAAAGTGTGCAGTGTCTTGGCCCATaGAGTGCAGCTTTCTTCTTCCATAGTTATTACCTT +
Preference number: 3 (lower is better)
Translates to: SLCQKSVQCLGP*SAAFFFHSYYL
Trigger: AAGGTAATAACTATGGAAGAAGAAAGCTGCACTTCATGGGCCAAGACACTGCACACTTTTCTGACAGAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp AACATGGAGACAGAAATGCTTCTTGAATTTGTGGGGTaGCAGCCAGTAGTCTTGTTCCCAATCTTTCTGGTA +
Preference number: 3 (lower is better)
Translates to: NMETEMLLEFVG*QPVVLFPIFLV
Trigger: TACCAGAAAGATTGGGAACAAGACTACTGGCTGTCACCCCACAAATTCAAGAAGCATTTCTGTCTCCATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp CCAGAGAAGACAGGTTCATTTCTAGCAATCAGACATTaGTTCAGAACAACCTCTGTAACTTCAGTCAGTCAC +
Preference number: 3 (lower is better)
Translates to: PEKTGSFLAIRH*FRTTSVTSVSH
Trigger: GTGACTGACTGAAGTTACAGAGGTTGTTCTGAACCAATGTCTGATTGCTAGAAATGAACCTGTCTTCTCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp AGCTTCCCAGTTTGTATTTGTACTTTAGGAATCCTCTaGTTCTCAACTTCAAGGCAGCATTGCAAAGACTGC +
Preference number: 3 (lower is better)
Translates to: SFPVCICTLGIL*FSTSRQHCKDC
Trigger: GCAGTCTTTGCAATGCTGCCTTGAAGTTGAGAACCAGAGGATTCCTAAAGTACAAATACAAACTGGGAAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp TCCTACACAACATCTGACAGAGCTCTTAACACTGAATaGATCTTCTATCCCAAAGTTCCAAAGTCCTTCCAC +
Preference number: 3 (lower is better)
Translates to: SYTTSDRALNTE*IFYPKVPKSFH
Trigger: GTGGAAGGACTTTGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCTACTTAGCAGACAATTaGAAGTCCAAAATACCCTGG +
Preference number: 3 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFYLADN*KSKIPW
Trigger: CCAGGGTATTTTGGACTTCAAATTGTCTGCTAAGTA...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CTCTCTAGGAGGCAGGTAATGTTTGACTTTGGTTATTATTGCCTTTCAATTTTTGAAACTGGCCGCTCTTaGCTCTCTCTGACTCTCTTC +
Preference number: 3 (lower is better)
Translates to: LSRRQVMFDFGYYCLSIFETGRS*LSLTLF
Trigger: GAAGAGAGTCAGAGAGAGCAAAGAGCGGCCAGTTTC...AAAAATTGAAAGGCAATAATAACCAAAGTCAAACATTACCTGCCTCCTAGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGACTTCCCAGTTTGTATTaGTACTTTAGGAATCCTCTG +
Preference number: 3 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRLPSLY*YFRNPL
Trigger: CAGAGGATTCCTAAAGTACAAATACAAACTGGGAAG...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp TCAGATTCAGCATCTAAAGATAATAAGAGAGCATGTTaGAAGGAGTGGAGAGAATGTATGGACCAGGGGAGT +
Preference number: 3 (lower is better)
Translates to: SDSASKDNKRAC*KEWRECMDQGS
Trigger: ACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAACATGCTCTCTTATTATCTTTAGATGCTGAATCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp AGGACCTTTGAGAAAGATAAGAGAGTGTCTGTCTCTTaGCACAGAAACTCAGAGGAATGGCTATCTCACAAT +
Preference number: 3 (lower is better)
Translates to: RTFEKDKRVSVS*HRNSEEWLSHN
Trigger: ATTGTGAGATAGCCATTCCTCTGAGTTTCTGTGTCAAGAGACAGACACTCTCTTATCTTTCTCAAAGGTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR GCA 72 bp TATCCAGTAAGAGCTGCACCCTCCCATATCAACCATTaGTTAAGAAAATACCCCACTAACTTGTCTATAGTC +
Preference number: 3 (lower is better)
Translates to: YPVRAAPSHINH*LRKYPTNLSIV
Trigger: GACTATAGACAAGTTAGTGGGGTATTTTCTTAAGCAATGGTTGATATGGGAGGGTGCAGCTCTTACTGGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp CCAATGAAGTGGTCCAGGGCATTTAAGTTCTGTGACTaGTACATTTGGCTTCTATTGACTGAATTCACAGTA +
Preference number: 3 (lower is better)
Translates to: PMKWSRAFKFCD*YIWLLLTEFTV
Trigger: TACTGTGAATTCAGTCAATAGAAGCCAAATGTACCAGTCACAGAACTTAAATGCCCTGGACCACTTCATTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp TTGACACAGAAACTCAGAGGAATGGCTATCTCACAATaGCTCTCTCAGCTTGCTTCTTTATATAAGGCATTG +
Preference number: 3 (lower is better)
Translates to: LTQKLRGMAISQ*LSQLASLYKAL
Trigger: CAATGCCTTATATAAAGAAGCAAGCTGAGAGAGCCATTGTGAGATAGCCATTCCTCTGAGTTTCTGTGTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGAGTTACTCAAAATGTTTaGTGTACACAGTGCCATCAA +
Preference number: 3 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRVTQNV*CTQCHQ
Trigger: TTGATGGCACTGTGTACACAAAACATTTTGAGTAAC...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CTCTCTAGGAGGCAGGTAATGTTTGACTTTGGTTATTATTGCCTTTCAATTTTTTTTAGTCCTCGTACTTaGGAAGCAGAGGCTGGCAGA +
Preference number: 3 (lower is better)
Translates to: LSRRQVMFDFGYYCLSIFFSPRT*EAEAGR
Trigger: TCTGCCAGCCTCTGCTTCCAAAGTACGAGGACTAAA...AAAAATTGAAAGGCAATAATAACCAAAGTCAAACATTACCTGCCTCCTAGAGAG
41% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACCATCACAAGGACCTTaGAGAAAGATAAGAGAGTGT +
Preference number: 3 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPPSQGP*RKIREC
Trigger: ACACTCTCTTATCTTTCTCAAAGGTCCTTGTGATGG...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGTACTTAGCAGACAATTaGAAGTCCAAAATACCCTGG +
Preference number: 3 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLYLADN*KSKIPW
Trigger: CCAGGGTATTTTGGACTTCAAATTGTCTGCTAAGTA...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCAAATGGCTCTCTCAGCTaGCTTCTTTATATAAGGCAT +
Preference number: 3 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPNGSLS*LLYIRH
Trigger: ATGCCTTATATAAAGAAGCAAGCTGAGAGAGCCATT...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp AACACAGGGAAAACACATCCTAAGTTTGTCTGTTGCTaGACATGGAGACAGAAATGCTTCTTGAATTTGTGG +
Preference number: 3 (lower is better)
Translates to: NTGKTHPKFVCC*TWRQKCFLNLW
Trigger: CCACAAATTCAAGAAGCATTTCTGTCTCCATGTTCAGCAACAGACAAACTTAGGATGTGTTTTCCCTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp TCAATACAGTACACACTCGTTACTCAAAATGTTTTGTGTACACAGTGCCATCAATGCTTAAAGTGCTATTaGGGTATGTCTTACCCACAG +
Preference number: 3 (lower is better)
Translates to: SIQYTLVTQNVLCTQCHQCLKCY*GMSYPQ
Trigger: CTGTGGGTAAGACATACCCAAATAGCACTTTAAGCA...TTGATGGCACTGTGTACACAAAACATTTTGAGTAACGAGTGTGTACTGTATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp TCAATACAGTACACACTCGTTACTCAAAATGTTTTGTGTACACAGTGCCATCAATCTAGCAATCAGACATaGGTTCAGAACAACCTCTGT +
Preference number: 3 (lower is better)
Translates to: SIQYTLVTQNVLCTQCHQSSNQT*VQNNLC
Trigger: ACAGAGGTTGTTCTGAACCAATGTCTGATTGCTAGA...TTGATGGCACTGTGTACACAAAACATTTTGAGTAACGAGTGTGTACTGTATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp CCTAATAAACGAGACCTTGATAGGTTGATATCTACTTaGTCCTCCGACTTTCTTTCTTTTATTCCCATTTCC +
Preference number: 3 (lower is better)
Translates to: PNKRDLDRLIST*SSDFLSFIPIS
Trigger: GGAAATGGGAATAAAAGAAAGAAAGTCGGAGGACCAAGTAGATATCAACCTATCAAGGTCTCGTTTATTAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCAGTTTTACAAATCCTaGTTAGTCCCATTTTCTCAG +
Preference number: 3 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVQFYKS*LVPFSQ
Trigger: CTGAGAAAATGGGACTAACAAGGATTTGTAAAACTG...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCATGTCACTATCTTATaGTATGGATCCAATTTACGG +
Preference number: 3 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVHVTIL*YGSNLR
Trigger: CCGTAAATTGGATCCATACAATAAGATAGTGACATG...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CCA 72 bp TGGTCCAGGGCATTTAAGTTCTGTGACTGGTACATTTaGCTTCTATTGACTGAATTCACAGTAAATATCATT +
Preference number: 3 (lower is better)
Translates to: WSRAFKFCDWYI*LLLTEFTVNII
Trigger: AATGATATTTACTGTGAATTCAGTCAATAGAAGCCAAATGTACCAGTCACAGAACTTAAATGCCCTGGACCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp TCAATACAGTACACACTCGTTACTCAAAATGTTTTGTGTACACAGTGCCATCAATGCATGCTTACAATTTaGGTAGTGGTAAACCAGTTT +
Preference number: 3 (lower is better)
Translates to: SIQYTLVTQNVLCTQCHQCMLTI*VVVNQF
Trigger: AAACTGGTTTACCACTACCAAAATTGTAAGCATGCA...TTGATGGCACTGTGTACACAAAACATTTTGAGTAACGAGTGTGTACTGTATTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR-3UTR CAA 90 bp CTCTCTAGGAGGCAGGTAATGTTTGACTTTGGTTATTATTGCCTTTCAATTTTTTTACATCACTTCCTTTaGAGTCAAATGACACAGACT +
Preference number: 3 (lower is better)
Translates to: LSRRQVMFDFGYYCLSIFLHHFL*SQMTQT
Trigger: AGTCTGTGTCATTTGACTCAAAAGGAAGTGATGTAA...AAAAATTGAAAGGCAATAATAACCAAAGTCAAACATTACCTGCCTCCTAGAGAG
36% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR TCA 72 bp AAAGCTCAGGGGTATTCATTAATAAAGGTAAACCAGTaGATGCTTAATGATTGTGTTACAGATTGGAAGTTG +
Preference number: 3 (lower is better)
Translates to: KAQGYSLIKVNQ*MLNDCVTDWKL
Trigger: CAACTTCCAATCTGTAACACAATCATTAAGCATTCACTGGTTTACCTTTATTAATGAATACCCCTGAGCTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp CTGTCTTGCACCCACCCCACCAGAGCCACCTCTACCTaGCTGCCTAGGAGAAGGGCAGGGATAGATCTCCTG +
Preference number: 4 (lower is better)
Translates to: LSCTHPTRATST*LPRRRAGIDLL
Trigger: CAGGAGATCTATCCCTGCCCTTCTCCTAGGCAGCAAGGTAGAGGTGGCTCTGGTGGGGTGGGTGCAAGACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CCA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTGTGCCATGCAGACTTTaGCCTGAGTCTCCTCCACCC +
Preference number: 4 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFVPCRL*PESPPP
Trigger: GGGTGGAGGAGACTCAGGCCAAAGTCTGCATGGCAC...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp CGATGTTCCAGAGATAAGATCCAGAGTGCCCGCTGCTaGGCACCTGACTTCGGCCCCCATGTCAGCAGTTGC +
Preference number: 4 (lower is better)
Translates to: RCSRDKIQSARC*APDFGPHVSSC
Trigger: GCAACTGCTGACATGGGGGCCGAAGTCAGGTGCCAAGCAGCGGGCACTCTGGATCTTATCTCTGGAACATCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp GATCCAACTCACGATCTTCTGGGCTCCTTCAAGGGCTaGGGTCACTTCTCCAGCCATGCCCTTTGTAGCACA +
Preference number: 4 (lower is better)
Translates to: DPTHDLLGSFKG*GHFSSHALCST
Trigger: TGTGCTACAAAGGGCATGGCTGGAGAAGTGACCCAAGCCCTTGAAGGAGCCCAGAAGATCGTGAGTTGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR GCA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTAAAGGGGCAAAAAGTTaGATAACCAAGGGCCAGAAA +
Preference number: 4 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFKGAKS*ITKGQK
Trigger: TTTCTGGCCCTTGGTTATGCAACTTTTTGCCCCTTT...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR GCA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTTTCTGCCACAGAGCATaGCAAAATTTAACCAAAGGC +
Preference number: 4 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFFCHRA*QNLTKG
Trigger: GCCTTTGGTTAAATTTTGGCATGCTCTGTGGCAGAA...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp CATGGCAGCATCCAGGCTGTCATGGCACAGGCAGAGTaGGGAGTTCTACGTCTTCATCCAAAAGCTACTAGT +
Preference number: 4 (lower is better)
Translates to: HGSIQAVMAQAE*GVLRLHPKATS
Trigger: ACTAGTAGCTTTTGGATGAAGACGTAGAACTCCCAACTCTGCCTGTGCCATGACAGCCTGGATGCTGCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp GCTACCAGGGTAAAGCTTCCCAGTTTGTATTTGTACTTTAGGAATCCTCTGGTTATGCAGACTTTGGCCTaGGTCTCCTCCACCCAGATG +
Preference number: 4 (lower is better)
Translates to: ATRVKLPSLYLYFRNPLVMQTLA*VSSTQM
Trigger: CATCTGGGTGGAGGAGACTCAGGCCAAAGTCTGCAT...AACCAGAGGATTCCTAAAGTACAAATACAAACTGGGAAGCTTTACCCTGGTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CCA 90 bp GGCCTGCTGAAGGTGAGTGCTGGGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTCTCAGGACCATGAGATaGAGAACAATCAATTTTATT +
Preference number: 4 (lower is better)
Translates to: GLLKVSAGSGYQGKASQFLRTMR*RTINFI
Trigger: AATAAAATTGATTGTTCTCCATCTCATGGTCCTGAG...AAACTGGGAAGCTTTACCCTGGTAGCCTGACCCAGCACTCACCTTCAGCAGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGGGCTTCCCCAACAACTaGATGTATAATTCACAGAAA +
Preference number: 4 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMGFPNN*MYNSQK
Trigger: TTTCTGTGAATTATACATTCAGTTGTTGGGGAAGCC...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp GCTACCAGGGTAAAGCTTCCCAGTTTGTATTTGTACTTTAGGAATCCTCTGGTTCAAAGGCCATCCCTGTaGATCAGCACAAAGGGGCAA +
Preference number: 4 (lower is better)
Translates to: ATRVKLPSLYLYFRNPLVQRPSL*ISTKGQ
Trigger: TTGCCCCTTTGTGCTGATTCACAGGGATGGCCTTTG...AACCAGAGGATTCCTAAAGTACAAATACAAACTGGGAAGCTTTACCCTGGTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp TGTCAGCGTCACTCTGTCAGAAAAGTGTGCAGTGTCTaGGCCCATGAAGTGCAGCTTTCTTCTTCCATAGTT +
Preference number: 4 (lower is better)
Translates to: CQRHSVRKVCSV*AHEVQLSSSIV
Trigger: AACTATGGAAGAAGAAAGCTGCACTTCATGGGCCAAGACACTGCACACTTTTCTGACAGAGTGACGCTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp TTTAGGAATCCTCTGGTTCTCAACTTCAAGGCAGCATaGCAAAGACTGCAGTTGTCAGCGTCACTCTGTCAG +
Preference number: 4 (lower is better)
Translates to: FRNPLVLNFKAA*QRLQLSASLCQ
Trigger: CTGACAGAGTGACGCTGACAACTGCAGTCTTTGCAATGCTGCCTTGAAGTTGAGAACCAGAGGATTCCTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTGGCTTCCCCAACAACTaGATGTATAATTCACAGAAA +
Preference number: 4 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACGFPNN*MYNSQK
Trigger: TTTCTGTGAATTATACATTCAGTTGTTGGGGAAGCC...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACAAAGGCCATCCCTGTaGATCAGCACAAAGGGGCAA +
Preference number: 4 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPQRPSL*ISTKGQ
Trigger: TTGCCCCTTTGTGCTGATTCACAGGGATGGCCTTTG...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp AGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTaGCACCTAAGAACTGGCCACTCTTTGCTCTCTCTA +
Preference number: 4 (lower is better)
Translates to: RPQEARNYNNTV*HLRTGHSLLSL
Trigger: TAGAGAGAGCAAAGAGTGGCCAGTTCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CCA 90 bp CCAGTTTCCCAGAGCCATCCTCCTCTGCCCACATTTCTAAGCTATGAACCAGCTTTTGTAAAAGCCATGTaGATCAGAATGAGGTATATG +
Preference number: 4 (lower is better)
Translates to: PVSQSHPPLPTFLSYEPAFVKAM*IRMRYM
Trigger: CATATACCTCATTCTGATCCACATGGCTTTTACAAA...AGCTGGTTCATAGCTTAGAAATGTGGGCAGAGGAGGATGGCTCTGGGAAACTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CCA 90 bp CTCTCTAGGAGGCAGGTAATGTTTGACTTTGGTTATTATTGCCTTTCAATTTTTGTGCCATGCAGACTTTaGCCTGAGTCTCCTCCACCC +
Preference number: 4 (lower is better)
Translates to: LSRRQVMFDFGYYCLSIFVPCRL*PESPPP
Trigger: GGGTGGAGGAGACTCAGGCCAAAGTCTGCATGGCAC...AAAAATTGAAAGGCAATAATAACCAAAGTCAAACATTACCTGCCTCCTAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CCA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTGTGCTTCTAATGGAATaGATTAGGTTCGTACTGATT +
Preference number: 4 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACVLLME*IRFVLI
Trigger: AATCAGTACGAACCTAATCCATTCCATTAGAAGCAC...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CCA 90 bp TACTTGGGGCTGGCTTACAGGTTCACAGTCCATTGTCATCAAGGTGGGAGCATGCTCAGGACCATGAGATaGAGAACAATCAATTTTATT +
Preference number: 4 (lower is better)
Translates to: YLGLAYRFTVHCHQGGSMLRTMR*RTINFI
Trigger: AATAAAATTGATTGTTCTCCATCTCATGGTCCTGAG...CATGCTCCCACCTTGATGACAATGGACTGTGAACCTGTAAGCCAGCCCCAAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp GGTCAGGCTACCAGGGTAAAGCTTCCCAGTTTGTATTaGTACTTTAGGAATCCTCTGGTTCTCAACTTCAAG +
Preference number: 4 (lower is better)
Translates to: GQATRVKLPSLY*YFRNPLVLNFK
Trigger: CTTGAAGTTGAGAACCAGAGGATTCCTAAAGTACAAATACAAACTGGGAAGCTTTACCCTGGTAGCCTGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp CCCTATAGGCCTCAGGAAGCCAGAAACTATAATAACACTGTCTTGCACCTAAGACATCTCTCAGGACCATaGGATGGAGAACAATCAATT +
Preference number: 4 (lower is better)
Translates to: PYRPQEARNYNNTVLHLRHLSGP*DGEQSI
Trigger: AATTGATTGTTCTCCATCTCATGGTCCTGAGAGATG...TCTTAGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp AAATTCTGGGATGAAAAGCATGGAATTCCAGAAGCCAGGCTTCCAGAGGTTTTCCATCTCTCAGGACCATaGGATGGAGAACAATCAATT +
Preference number: 4 (lower is better)
Translates to: KFWDEKHGIPEARLPEVFHLSGP*DGEQSI
Trigger: AATTGATTGTTCTCCATCTCATGGTCCTGAGAGATG...GAAAACCTCTGGAAGCCTGGCTTCTGGAATTCCATGCTTTTCATCCCAGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CCA 90 bp AGTTACATTTACGTCAGACAAGGAAGTGGAGGGGTGGTGAGGAGACCTGCTTGTTTTGTAAAAGCCATGTaGATCAGAATGAGGTATATG +
Preference number: 4 (lower is better)
Translates to: SYIYVRQGSGGVVRRPACFVKAM*IRMRYM
Trigger: CATATACCTCATTCTGATCCACATGGCTTTTACAAA...ACAAGCAGGTCTCCTCACCACCCCTCCACTTCCTTGTCTGACGTAAATGTAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp ACCTGGATATTAACAAAGGGCAGCTGCAAAGCAGGCTaGCTTGGCTTCAGTCACTCATTGATTCATTTTGAA +
Preference number: 4 (lower is better)
Translates to: TWILTKGSCKAG*LGFSHSLIHFE
Trigger: TTCAAAATGAATCAATGAGTGACTGAAGCCAAGCAAGCCTGCTTTGCAGCTGCCCTTTGTTAATATCCAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp CAATGGCTCTCTCAGCTTGCTTCTTTATATAAGGCATaGCTAGATACCCAGGGTTGGGAATTATCCAGTAAG +
Preference number: 4 (lower is better)
Translates to: QWLSQLASLYKA*LDTQGWELSSK
Trigger: CTTACTGGATAATTCCCAACCCTGGGTATCTAGCAATGCCTTATATAAAGAAGCAAGCTGAGAGAGCCATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp TCCAGAGAAGACAGGTTCATTTCTAGCAATCAGACATaGGTTCAGAACAACCTCTGTAACTTCAGTCAGTCA +
Preference number: 4 (lower is better)
Translates to: SREDRFISSNQT*VQNNLCNFSQS
Trigger: TGACTGACTGAAGTTACAGAGGTTGTTCTGAACCAATGTCTGATTGCTAGAAATGAACCTGTCTTCTCTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCACCATGTGGATCAGAATaGGGTATATGGGTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPPCGSE*GIWVSS
Trigger: AGAAGAAACCCATATACCTCATTCTGATCCACATGG...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR GCA 90 bp ACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTCCAAAAGGGGCAAAAAGTTaGATAACCAAGGGCCAGAAA +
Preference number: 4 (lower is better)
Translates to: TTSDRALNTEWIFYPKVPKGAKS*ITKGQK
Trigger: TTTCTGGCCCTTGGTTATGCAACTTTTTGCCCCTTT...TGGAACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR GCA 90 bp TCAATACAGTACACACTCGTTACTCAAAATGTTTTGTGTACACAGTGCCATCAATCTCAAACCAAAGGCTaGTATTGTCTTAGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: SIQYTLVTQNVLCTQCHQSQTKG*YCLRQS
Trigger: GGACTGCCTAAGACAATAGCAGCCTTTGGTTTGAGA...TTGATGGCACTGTGTACACAAAACATTTTGAGTAACGAGTGTGTACTGTATTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR GCA 90 bp TACACAACATCTGACAGAGCTCTTAACACTGAATGGATCTTCTATCCCAAAGTTTTCTGCCACAGAGCATaGCAAAATTTAACCAAAGGC +
Preference number: 4 (lower is better)
Translates to: YTTSDRALNTEWIFYPKVFCHRA*QNLTKG
Trigger: GCCTTTGGTTAAATTTTGGCATGCTCTGTGGCAGAA...AACTTTGGGATAGAAGATCCATTCAGTGTTAAGAGCTCTGTCAGATGTTGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp GATTGTCTGAAGATAAACACATGCTTAAAGTGCTATTaGGGTATGTCTTACCCACAGTATTGTAGAACGGAG +
Preference number: 4 (lower is better)
Translates to: DCLKINTCLKCY*GMSYPQYCRTE
Trigger: CTCCGTTCTACAATACTGTGGGTAAGACATACCCAAATAGCACTTTAAGCATGTGTTTATCTTCAGACAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR TCA 90 bp CTCTCTAGGAGGCAGGTAATGTTTGACTTTGGTTATTATTGCCTTTCAATTTTTCCATGTGGATCAGAATaGGGTATATGGGTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LSRRQVMFDFGYYCLSIFPCGSE*GIWVSS
Trigger: AGAAGAAACCCATATACCTCATTCTGATCCACATGG...AAAAATTGAAAGGCAATAATAACCAAAGTCAAACATTACCTGCCTCCTAGAGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp CATAATTTGCAGACAGGTTTTACACAGTATACCCTTTaGCCCAAACAGCTTTACTTAGAAATGTTCGTTGCA +
Preference number: 4 (lower is better)
Translates to: HNLQTGFTQYTL*PKQLYLEMFVA
Trigger: TGCAACGAACATTTCTAAGTAAAGCTGTTTGGGCAAAAGGGTATACTGTGTAAAACCTGTCTGCAAATTATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp GTAATGCAAAGTTTTTGCTTTAGTAGTTCTGGTATCTaGTTAATCATAGCTGATTCTTCAGCCCCAGCTAAC +
Preference number: 4 (lower is better)
Translates to: VMQSFCFSSSGI*LIIADSSAPAN
Trigger: GTTAGCTGGGGCTGAAGAATCAGCTATGATTAACAAGATACCAGAACTACTAAAGCAAAAACTTTGCATTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp ACAATATTAAAAACACAGGGAAAACACATCCTAAGTTaGTCTGTTGCTGAACATGGAGACAGAAATGCTTCT +
Preference number: 4 (lower is better)
Translates to: TILKTQGKHILS*SVAEHGDRNAS
Trigger: AGAAGCATTTCTGTCTCCATGTTCAGCAACAGACAAACTTAGGATGTGTTTTCCCTGTGTTTTTAATATTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp GTCTATAGTCCATTCTTGATAAGAACAATTTCTCAATaGAGGTTCCTCTTTCTGGATGATCCTAATGTGTGT +
Preference number: 4 (lower is better)
Translates to: VYSPFLIRTISQ*RFLFLDDPNVC
Trigger: ACACACATTAGGATCATCCAGAAAGAGGAACCTCAATTGAGAAATTGTTCTTATCAAGAATGGACTATAGAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
3UTR CAA 72 bp TACAGTATTAATACTGAATTCTCACCAGGCTTCCTCTaGGATATATTATTTTTGTCCTGGGTCATAGAGATA +
Preference number: 4 (lower is better)
Translates to: YSINTEFSPGFL*DILFLSWVIEI
Trigger: TATCTCTATGACCCAGGACAAAAATAATATATCCAAGAGGAAGCCTGGTGAGAATTCAGTATTAATACTGTA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS CCA 90 bp CACTTTGAGCAGCTCTCAGCTCAGGGGGAGTTCTGTAGAGAAGCTTaGAGTTCTGAAGGTAGAGGACATGCTGGTGGTGCTTGTGGAGAA +
Preference number: 5 (lower is better)
Translates to: HFEQLSAQGEFCREA*SSEGRGHAGGACGE
Trigger: TTCTCCACAAGCACCACCAGCATGTCCTCTACCTTCAGAACTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTCAAAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000091729.2
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CAA 90 bp GTTGAAAGGAGTGGAGAGAATGTATGGACCAGGGGAGTATCAGACTTTTGTGATCAGAAGGAAGACACTTaGAGCAGCTCTCAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: VERSGENVWTRGVSDFCDQKEDT*SSSQLR
Trigger: CCTGAGCTGAGAGCTGCTCAAAGTGTCTTCCTTCTG...ATCACAAAAGTCTGATACTCCCCTGGTCCATACATTCTCTCCACTCCTTTCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS-3UTR CAA 90 bp GTTACAGATTGGAAGTTGTTAAAAATGACTACCCATAAGCCAGGTGTGGTACTGCAGAAGGAAGACACTTaGAGCAGCTCTCAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: VTDWKLLKMTTHKPGVVLQKEDT*SSSQLR
Trigger: CCTGAGCTGAGAGCTGCTCAAAGTGTCTTCCTTCTG...CAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACTTCCAATCTGTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS GCA 90 bp ATTAAAGCATTGAGTATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCATGCAGACTTTGGCCTGAGTCTCCTCCACCCAGATGTTCTG +
Preference number: 5 (lower is better)
Translates to: IKALSIQKNEKNGRM*HADFGLSLLHPDVL
Trigger: CAGAACATCTGGGTGGAGGAGACTCAGGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAATGCTTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091729.2
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS GCA 72 bp GTAGCCACTGGCCCCTCCCATGGCACCCTGAAACACTaGATCTCTCAGGACCATGAGATGGAGAACAATCAA +
Preference number: 6 (lower is better)
Translates to: VATGPSHGTLKH*ISQDHEMENNQ
Trigger: TTGATTGTTCTCCATCTCATGGTCCTGAGAGATGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091729.2
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS GCA 72 bp TTGAGTATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCATGCAGACTTTGGCCTGAGTCTCCTCCACCCA +
Preference number: 6 (lower is better)
Translates to: LSIQKNEKNGRM*HADFGLSLLHP
Trigger: TGGGTGGAGGAGACTCAGGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091729.2
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS TCA 72 bp GGTATATGGGTTTCTTCTCAGGGCTTCCCCAACAACTaGATGTATAATTCACAGAAACAGACATGTTCCCCA +
Preference number: 6 (lower is better)
Translates to: GIWVSSQGFPNN*MYNSQKQTCSP
Trigger: TGGGGAACATGTCTGTTTCTGTGAATTATACATTCAGTTGTTGGGGAAGCCCTGAGAAGAAACCCATATACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000091729.2
ENSMUST00000227520.2
ENSMUST00000228889.2
CDS CCA 72 bp TTTGCAAGAAGGATTAGAATGTTTGTAAAAGCCATGTaGATCAGAATGAGGTATATGGGTTTCTTCTCAGGG +
Preference number: 6 (lower is better)
Translates to: FARRIRMFVKAM*IRMRYMGFFSG
Trigger: CCCTGAGAAGAAACCCATATACCTCATTCTGATCCACATGGCTTTTACAAACATTCTAATCCTTCTTGCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000091729.2
ENSMUST00000227520.2
ENSMUST00000228889.2