Pregenerated sensors for VMN1R202 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094379Ensembl transcript IDs: ENSMUST00000078642.2, ENSMUST00000228020.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTATAAAAGCAGCACCAGTTCTGGGCTCGGGGTCTCTTCGCCTCTaGAATCAAGCTCTCCCAATAAATGTGTGCAGAAGGATCCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: PIKAAPVLGSGSLRL*NQALPINVCRRILL Trigger: CAACAGGATCCTTCTGCACACATTTATTGGGAGAGCTTGATTGCAGAGGCGAAGAGACCCCGAGCCCAGAACTGGTGCTGCTTTTATAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 90 bp | CTGAGAGGAACAGAGGATAAAGGAAGCTCCAGGGGAGAACTAGTATaGAAACAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAA | + |
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Preference number: 1 (lower is better) Translates to: LRGTEDKGSSRGELV*KQPGGAVCLEKPLK Trigger: TTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCCCCTGGAGCTTCCTTTATCCTCTGTTCCTCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 90 bp | CATGTTTCTGGGGACTTATCAAGTCCACCTTGGTCTTGCTGTCTCTaGGATCTATCCTGGATCACCCAGCATGAATCTGGCATCTCAACT | + |
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Preference number: 1 (lower is better) Translates to: HVSGDLSSPPWSCCL*DLSWITQHESGIST Trigger: AGTTGAGATGCCAGATTCATGCTGGGTGATCCAGGATAGATCCCAGAGACAGCAAGACCAAGGTGGACTTGATAAGTCCCCAGAAACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 90 bp | TTTAGTGCTTTGTATCCTGAAATGGCAAGCACTTACTACATTCAGTaGATTAGCTTCGCTTTCTGGCCATGTGCACTTTGTAAGAGGTCT | + |
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Preference number: 1 (lower is better) Translates to: FSALYPEMASTYYIQ*ISFAFWPCALCKRS Trigger: AGACCTCTTACAAAGTGCACATGGCCAGAAAGCGAAGCTAATCCACTGAATGTAGTAAGTGCTTGCCATTTCAGGATACAAAGCACTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR GCA 90 bp | CAGCTCAGGGGCGATTTACTTTGCTCTCAGTCTGACTCTAACTACTaGAACAAAATTTGGAAACATAAATACAACAGACAACAGAGAACA | + |
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Preference number: 1 (lower is better) Translates to: QLRGDLLCSQSDSNY*NKIWKHKYNRQQRT Trigger: TGTTCTCTGTTGTCTGTTGTATTTATGTTTCCAAATTTTGTTGCAGTAGTTAGAGTCAGACTGAGAGCAAAGTAAATCGCCCCTGAGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGTGGTCTTGCTGTCTCTaGGATCTATCCTGGATCACC | + |
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Preference number: 2 (lower is better) Translates to: GELVWKQPGGAVCLEKPLWSCCL*DLSWIT Trigger: GGTGATCCAGGATAGATCCCAGAGACAGCAAGACCA...CAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGCTCTGGGATCTATCCTaGATCACCCAGCATGAATCT | + |
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Preference number: 2 (lower is better) Translates to: GELVWKQPGGAVCLEKPLLWDLS*ITQHES Trigger: AGATTCATGCTGGGTGATCCAGGATAGATCCCAGAG...CAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CAA 90 bp | ACTTGCGTGAAGTTAAATGACCATTGTGGGAAGCCACATGTGCCATaGCAGAGTGGCACTGACTACTGCTGGCCACCATGCATAAGTTTG | + |
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Preference number: 2 (lower is better) Translates to: TCVKLNDHCGKPHVP*QSGTDYCWPPCISL Trigger: CAAACTTATGCATGGTGGCCAGCAGTAGTCAGTGCCACTCTGCAATGGCACATGTGGCTTCCCACAATGGTCATTTAACTTCACGCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR GCA 90 bp | GGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGTCAAAAATCAGCCCATaGTTCAGAAGCACATTGGTG | + |
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Preference number: 2 (lower is better) Translates to: GELVWKQPGGAVCLEKPLSKISP*FRSTLV Trigger: CACCAATGTGCTTCTGAAGCATGGGCTGATTTTTGA...CAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCATCTTGTGTTTCCCTATaGAGGACACAGCAAGCTAAC | + |
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Preference number: 2 (lower is better) Translates to: QPGGAVCLEKPLKMFQHASCVSL*RTQQAN Trigger: GTTAGCTTGCTGTGTCCTTCATAGGGAAACACAAGA...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGTACAGAGAGAGAGAGTAGCCAATCAGATGAGGAACATGCAAATGAGGCATATAGGCCTAGAGAGGTaGCTGATAAAGCTGGTTCCA | + |
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Preference number: 2 (lower is better) Translates to: EVQRERVANQMRNMQMRHIGLER*LIKLVP Trigger: TGGAACCAGCTTTATCAGGCACCTCTCTAGGCCTAT...ATGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCTCTGTACCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCAATTAGCTTCGCTTTCTaGCCATGTGCACTTTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: QPGGAVCLEKPLKMFQHAISFAF*PCALCK Trigger: CTTACAAAGTGCACATGGCCAGAAAGCGAAGCTAAT...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGCTTTGTATCCTGAAATaGCAAGCACTTACTACATTC | + |
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Preference number: 2 (lower is better) Translates to: GELVWKQPGGAVCLEKPLLCILK*QALTTF Trigger: GAATGTAGTAAGTGCTTGCCATTTCAGGATACAAAG...CAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGGAAGCTCCAGGGGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCTCAGAAGCACATTGGTaGGCAATTCTTAGTTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: KGSSRGELVWKQPGGAVCSEAHW*AILSFV Trigger: AACAAAACTAAGAATTGCCCACCAATGTGCTTCTGA...GCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCCCCTGGAGCTTCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGGAAGCTCCAGGGGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCGTCTACTATTGTGTCTaGTATTTCATTTGTCACTCC | + |
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Preference number: 2 (lower is better) Translates to: KGSSRGELVWKQPGGAVCVYYCV*YFICHS Trigger: GGAGTGACAAATGAAATACCAGACACAATAGTAGAC...GCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCCCCTGGAGCTTCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCATTACTAATGTTGGGATaGTGTGATATTGAGCATCCC | + |
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Preference number: 2 (lower is better) Translates to: QPGGAVCLEKPLKMFQHALLMLG*CDIEHP Trigger: GGGATGCTCAATATCACACCATCCCAACATTAGTAA...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCATCTTCTGATAAAAGATaGTTCTTCACTTGCTCATTG | + |
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Preference number: 2 (lower is better) Translates to: QPGGAVCLEKPLKMFQHASSDKR*FFTCSL Trigger: CAATGAGCAAGTGAAGAAGCATCTTTTATCAGAAGA...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGTACAGAGAGAGAGAGTAGCCAATCAGATGAGGAACATGCAAATGAGGCATGGGACAGGAGTCATATaGCTAATTGGTAAAATCATG | + |
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Preference number: 2 (lower is better) Translates to: EVQRERVANQMRNMQMRHGTGVI*LIGKIM Trigger: CATGATTTTACCAATTAGCCATATGACTCCTGTCCC...ATGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCTCTGTACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGTACAGAGAGAGAGAGTAGCCAATCAGATGAGGAACATGCAAATGAGGCATCAGGATTTAGGTCTCTaGATAAACAAGTTACAGAAG | + |
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Preference number: 2 (lower is better) Translates to: EVQRERVANQMRNMQMRHQDLGL*INKLQK Trigger: CTTCTGTAACTTGTTTATGCAGAGACCTAAATCCTG...ATGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCTCTGTACCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CCA 90 bp | GTCAACTCTCTCCCAGAGATTGGGTCTACTATTGTGTCTGGTATTTCATTTGTCACTTACTACATTCAGTaGATTAGCTTCGCTTTCTGG | + |
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Preference number: 2 (lower is better) Translates to: VNSLPEIGSTIVSGISFVTYYIQ*ISFAFW Trigger: CCAGAAAGCGAAGCTAATCCACTGAATGTAGTAAGT...GACAAATGAAATACCAGACACAATAGTAGACCCAATCTCTGGGAGAGAGTTGAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CAA 90 bp | GTGGAATTCATATACAGTGTATATTGTTATCCCTTCTTTAGTGCTTaGTATCCTGAAATGGCAAGCACTTACTACATTCAGTGGATTAGC | + |
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Preference number: 2 (lower is better) Translates to: VEFIYSVYCYPFFSA*YPEMASTYYIQWIS Trigger: GCTAATCCACTGAATGTAGTAAGTGCTTGCCATTTCAGGATACAAAGCACTAAAGAAGGGATAACAATATACACTGTATATGAATTCCAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 72 bp | GGGGACTTATCAAGTCCACCTTGGTCTTGCTGTCTCTaGGATCTATCCTGGATCACCCAGCATGAATCTGGC | + |
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Preference number: 3 (lower is better) Translates to: GDLSSPPWSCCL*DLSWITQHESG Trigger: GCCAGATTCATGCTGGGTGATCCAGGATAGATCCCAGAGACAGCAAGACCAAGGTGGACTTGATAAGTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGGAAGCTCCAGGGGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCACTCTCTCCCAGAGATaGGGTCTACTATTGTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: KGSSRGELVWKQPGGAVCTLSQR*GLLLCL Trigger: CAGACACAATAGTAGACCCAATCTCTGGGAGAGAGT...GCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCCCCTGGAGCTTCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR TCA 72 bp | AACAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTaGAAATGTTTCAACATGCAGCTCAGGGGCGATTTA | + |
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Preference number: 3 (lower is better) Translates to: NSQEEQSALRNP*KCFNMQLRGDL Trigger: TAAATCGCCCCTGAGCTGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR GCA 72 bp | CATGTTTCTGGGGACTTATCAAGTCCACCTTGGTCTTaGTGTCTCTGGGATCTATCCTGGATCACCCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: HVSGDLSSPPWS*CLWDLSWITQH Trigger: ATGCTGGGTGATCCAGGATAGATCCCAGAGACAGCAAGACCAAGGTGGACTTGATAAGTCCCCAGAAACATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR GCA 72 bp | CTTCGCCTCTGCAATCAAGCTCTCCCAATAAATGTGTaGAGAAGGATCCTGTTGCAGCGTTGTTACTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: LRLCNQALPINV*RRILLQRCYCW Trigger: CCAGCAGTAACAACGCTGCAACAGGATCCTTCTGCACACATTTATTGGGAGAGCTTGATTGCAGAGGCGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 72 bp | ACAGAGGATAAAGGAAGCTCCAGGGGAGAACTAGTATaGAAACAGCCAGGAGGAGCAGTCTGCCTTGAGAAA | + |
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Preference number: 3 (lower is better) Translates to: TEDKGSSRGELV*KQPGGAVCLEK Trigger: TTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCCCCTGGAGCTTCCTTTATCCTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CAA 90 bp | GGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAGATGCTTCTTCACTaGCTCATTGGTTTAGAACAG | + |
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Preference number: 3 (lower is better) Translates to: GELVWKQPGGAVCLEKPLKMLLH*LIGLEQ Trigger: CTGTTCTAAACCAATGAGCAAGTGAAGAAGCATCTT...CAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGTACAGAGAGAGAGAGTAGCCAATCAGATGAGGAACATGCAAATGAGGCATAAGTCCACCTTGGTCTaGCTGTCTCTGGGATCTATC | + |
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Preference number: 3 (lower is better) Translates to: EVQRERVANQMRNMQMRHKSTLV*LSLGSI Trigger: GATAGATCCCAGAGACAGCAAGACCAAGGTGGACTT...ATGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCTCTGTACCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR TCA 72 bp | ACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCCTTaGGAAACCCCTGAAAATGTTTCAACATGCAGCTCA | + |
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Preference number: 3 (lower is better) Translates to: TSMETARRSSLP*ETPENVSTCSS Trigger: TGAGCTGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR GCA 72 bp | GGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTaGCTTGAGAAACCCCTGAAAATGTTTCAACATGCA | + |
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Preference number: 3 (lower is better) Translates to: GELVWKQPGGAV*LEKPLKMFQHA Trigger: TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR TCA 72 bp | AAGACACTGCCTGGCCCGGGCATGATAATGAGGCTTTaGGAGTATAACCAATCAGATGTGAGACATGCAAAT | + |
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Preference number: 3 (lower is better) Translates to: KTLPGPGMIMRL*EYNQSDVRHAN Trigger: ATTTGCATGTCTCACATCTGATTGGTTATACTCTCAAAGCCTCATTATCATGCCCGGGCCAGGCAGTGTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR TCA 72 bp | CAAGAAGAAGGTATCAGATTCCATTACAGATGGTTGTaGCTCATCATGTGGTTGTGGTCGAACTCAGGACCC | + |
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Preference number: 3 (lower is better) Translates to: QEEGIRFHYRWL*LIMWLWSNSGP Trigger: GGGTCCTGAGTTCGACCACAACCACATGATGAGTCACAACCATCTGTAATGGAATCTGATACCTTCTTCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR GCA 72 bp | CCATTGCAGAGTGGCACTGACTACTGCTGGCCACCATaGATAAGTTTGGACAAACAACCAATGTGTACATAT | + |
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Preference number: 3 (lower is better) Translates to: PLQSGTDYCWPP*ISLDKQPMCTY Trigger: ATATGTACACATTGGTTGTTTGTCCAAACTTATGCATGGTGGCCAGCAGTAGTCAGTGCCACTCTGCAATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CAA 90 bp | GAGGTACAGAGAGAGAGAGTAGCCAATCAGATGAGGAACATGCAAATGAGGCATTTTAAACAAACATTCTaGAGTCTGGAGGAGGGACTC | + |
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Preference number: 3 (lower is better) Translates to: EVQRERVANQMRNMQMRHFKQTF*SLEEGL Trigger: GAGTCCCTCCTCCAGACTCAAGAATGTTTGTTTAAA...ATGCCTCATTTGCATGTTCCTCATCTGATTGGCTACTCTCTCTCTCTGTACCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 72 bp | CACAGCAAGCTAACCTGCATGTTACTAATGTTGGGATaGTGTGATATTGAGCATCCCTGTCTACTTCCTAGA | + |
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Preference number: 3 (lower is better) Translates to: HSKLTCMLLMLG*CDIEHPCLLPR Trigger: TCTAGGAAGTAGACAGGGATGCTCAATATCACACCATCCCAACATTAGTAACATGCAGGTTAGCTTGCTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CAA 90 bp | GTCAACTCTCTCCCAGAGATTGGGTCTACTATTGTGTCTGGTATTTCATTTGTCCCCTTCTTTAGTGCTTaGTATCCTGAAATGGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: VNSLPEIGSTIVSGISFVPFFSA*YPEMAS Trigger: GCTTGCCATTTCAGGATACAAAGCACTAAAGAAGGG...GACAAATGAAATACCAGACACAATAGTAGACCCAATCTCTGGGAGAGAGTTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR GCA 72 bp | CTTGTGTTTCCCTATGAAGGACACAGCAAGCTAACCTaGATGTTACTAATGTTGGGATGGTGTGATATTGAG | + |
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Preference number: 3 (lower is better) Translates to: LVFPYEGHSKLT*MLLMLGWCDIE Trigger: CTCAATATCACACCATCCCAACATTAGTAACATGCAGGTTAGCTTGCTGTGTCCTTCATAGGGAAACACAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 72 bp | TTGTATCCTGAAATGGCAAGCACTTACTACATTCAGTaGATTAGCTTCGCTTTCTGGCCATGTGCACTTTGT | + |
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Preference number: 3 (lower is better) Translates to: LYPEMASTYYIQ*ISFAFWPCALC Trigger: ACAAAGTGCACATGGCCAGAAAGCGAAGCTAATCCACTGAATGTAGTAAGTGCTTGCCATTTCAGGATACAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 72 bp | CAACTCTCTCCCAGAGATTGGGTCTACTATTGTGTCTaGTATTTCATTTGTCACTCCAAATGTCCAGACTTT | + |
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Preference number: 3 (lower is better) Translates to: QLSPRDWVYYCV*YFICHSKCPDF Trigger: AAAGTCTGGACATTTGGAGTGACAAATGAAATACCAGACACAATAGTAGACCCAATCTCTGGGAGAGAGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR-3UTR CAA 90 bp | AAAGCAAGCAGGGAAAAAGACATCCTTCAGAAGCAGAATGAAGGAAAAGCATCTTGTCTGGTATTTCATTaGTCACTCCAAATGTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: KASREKDILQKQNEGKASCLVFH*SLQMSR Trigger: TCTGGACATTTGGAGTGACAAATGAAATACCAGACA...AGATGCTTTTCCTTCATTCTGCTTCTGAAGGATGTCTTTTTCCCTGCTTGCTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CCA 72 bp | ACTGTATTTCATAACTGTGTTTGTGCTAGAGTCAGATaGCTTTCTGACCCAAGACAGAGATTTTGGAATAAA | + |
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Preference number: 3 (lower is better) Translates to: TVFHNCVCARVR*LSDPRQRFWNK Trigger: TTTATTCCAAAATCTCTGTCTTGGGTCAGAAAGCCATCTGACTCTAGCACAAACACAGTTATGAAATACAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR CCA 90 bp | AAAGGAAGCTCCAGGGGAGAACTAGTATGGAAACAGCCAGGAGGAGCAGTCTGCGGCAAGAACATGCCATaGTGTCTGAGGTTTGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: KGSSRGELVWKQPGGAVCGKNMP*CLRFEL Trigger: AAGCTCAAACCTCAGACACCATGGCATGTTCTTGCC...GCAGACTGCTCCTCCTGGCTGTTTCCATACTAGTTCTCCCCTGGAGCTTCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CAA 72 bp | AAGTTAAATGACCATTGTGGGAAGCCACATGTGCCATaGCAGAGTGGCACTGACTACTGCTGGCCACCATGC | + |
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Preference number: 4 (lower is better) Translates to: KLNDHCGKPHVP*QSGTDYCWPPC Trigger: GCATGGTGGCCAGCAGTAGTCAGTGCCACTCTGCAATGGCACATGTGGCTTCCCACAATGGTCATTTAACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR TCA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCATGCTACTGCCTGCTGTaGTATAGTGCAGCAAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: QPGGAVCLEKPLKMFQHACYCLL*YSAASW Trigger: CCAACTTGCTGCACTATATCACAGCAGGCAGTAGCA...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR GCA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCATGGCCTAGAATTGTCTaGAGACCTGGAACTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: QPGGAVCLEKPLKMFQHAWPRIV*RPGTVK Trigger: CTTCACAGTTCCAGGTCTGCAGACAATTCTAGGCCA...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR TCA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCATCATACTTGGTATTGTaGAATCATTTGCCACTGTGG | + |
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Preference number: 4 (lower is better) Translates to: QPGGAVCLEKPLKMFQHASYLVL*NHLPLW Trigger: CCACAGTGGCAAATGATTTCACAATACCAAGTATGA...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR TCA 90 bp | AAAGCAAGCAGGGAAAAAGACATCCTTCAGAAGCAGAATGAAGGAAAAGCATCTACATGCCATGGTGTCTaGGGTTTGAGCTTTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: KASREKDILQKQNEGKASTCHGV*GLSFLH Trigger: GTGGAGAAAGCTCAAACCTCAGACACCATGGCATGT...AGATGCTTTTCCTTCATTCTGCTTCTGAAGGATGTCTTTTTCCCTGCTTGCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR TCA 90 bp | AGAATAAAATTCTATTTGTGGGTTACTGCATGTCCTCTTGTGTTTCCCTATGAAATGGTGTCTGAGGTTTaGGCTTTCTCCACAGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: RIKFYLWVTACPLVFPYEMVSEV*AFSTVW Trigger: CCACACTGTGGAGAAAGCTCAAACCTCAGACACCAT...TTCATAGGGAAACACAAGAGGACATGCAGTAACCCACAAATAGAATTTTATTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR CCA 90 bp | AAAGCAAGCAGGGAAAAAGACATCCTTCAGAAGCAGAATGAAGGAAAAGCATCTCAGGTCTTAGCAATATaGACATCAAAGATAATCAGG | + |
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Preference number: 4 (lower is better) Translates to: KASREKDILQKQNEGKASQVLAI*TSKIIR Trigger: CCTGATTATCTTTGATGTCCATATTGCTAAGACCTG...AGATGCTTTTCCTTCATTCTGCTTCTGAAGGATGTCTTTTTCCCTGCTTGCTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR GCA 90 bp | GTCTACTATTGTGTCTGGTATTTCATTTGTCACTCCAAATGTCCAGACTTTAAATATTGTGAAATCATTTaGCACTGTGGAACCTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: VYYCVWYFICHSKCPDFKYCEII*HCGTCV Trigger: TACACAGGTTCCACAGTGGCAAATGATTTCACAATA...TTTAAAGTCTGGACATTTGGAGTGACAAATGAAATACCAGACACAATAGTAGAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| 3UTR CAA 72 bp | ATATACAGTGTATATTGTTATCCCTTCTTTAGTGCTTaGTATCCTGAAATGGCAAGCACTTACTACATTCAG | + |
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Preference number: 4 (lower is better) Translates to: IYSVYCYPFFSA*YPEMASTYYIQ Trigger: CTGAATGTAGTAAGTGCTTGCCATTTCAGGATACAAAGCACTAAAGAAGGGATAACAATATACACTGTATAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS-3UTR CAA 90 bp | CAGCCAGGAGGAGCAGTCTGCCTTGAGAAACCCCTGAAAATGTTTCAACATGCAATGACATCTATATTTTaGTTCTCACGACCCATGATG | + |
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Preference number: 5 (lower is better) Translates to: QPGGAVCLEKPLKMFQHAMTSIF*FSRPMM Trigger: CATCATGGGTCGTGAGAACAAAAATATAGATGTCAT...TGCATGTTGAAACATTTTCAGGGGTTTCTCAAGGCAGACTGCTCCTCCTGGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000228020.2 |
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| CDS TCA 72 bp | AAGAGAAGGAGAAAGGCAAGAACATGCCATGGTGTCTaGGGTTTGAGCTTTCTCCACAGTGTGGTCCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: KRRRKARTCHGV*GLSFLHSVVLG Trigger: TCCCAGGACCACACTGTGGAGAAAGCTCAAACCTCAGACACCATGGCATGTTCTTGCCTTTCTCCTTCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078642.2 ENSMUST00000228020.2 |
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| CDS GCA 72 bp | CCTCTGTGTAGCTCTGATTTCTGGCCTAGAATTGTCTaGAGACCTGGAACTGTGAAGGTAGAGGACACGCTT | + |
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Preference number: 6 (lower is better) Translates to: PLCSSDFWPRIV*RPGTVKVEDTL Trigger: AAGCGTGTCCTCTACCTTCACAGTTCCAGGTCTGCAGACAATTCTAGGCCAGAAATCAGAGCTACACAGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078642.2 ENSMUST00000228020.2 |
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| CDS CCA 72 bp | GAGAGAGATGAACATCCACTTAACTGTGTTCCTGGATaGCAGTATATAGCAATACCCAGTAACCATCCCAAC | + |
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Preference number: 6 (lower is better) Translates to: ERDEHPLNCVPG*QYIAIPSNHPN Trigger: GTTGGGATGGTTACTGGGTATTGCTATATACTGCCATCCAGGAACACAGTTAAGTGGATGTTCATCTCTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078642.2 ENSMUST00000228020.2 |
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