Pregenerated sensors for VMN1R2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115072

Ensembl transcript IDs: ENSMUST00000105160.5, ENSMUST00000226198.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTGGTGCCTGATTCTCTTAGTGGAGTCAAGATGTTTAGAAGCAGGTaGACAAGGCAACTGACTGAGCAGGAGGGACCAATGTACTTGGTT	+
Preference number: 5 (lower is better) Translates to: LVPDSLSGVKMFRSR*TRQLTEQEGPMYLV Trigger: AACCAAGTACATTGGTCCCTCCTGCTCAGTCAGTTGCCTTGTGCACCTGCTTCTAAACATCTTGACTCCACTAAGAGAATCAGGCACCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2
CDS TCA 90 bp	GACTTGTCTCTCATGTCTGTAGAGAATACTAACCATGGAGATACTTaGGCAGGCCATGAGACCCAGACAGAAGACATCAGAGAAGCACAC	+
Preference number: 5 (lower is better) Translates to: DLSLMSVENTNHGDT*AGHETQTEDIREAH Trigger: GTGTGCTTCTCTGATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTATCTCCATGGTTAGTATTCTCTACAGACATGAGAGACAAGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2
CDS CAA 72 bp	ACAAGGCAACTGACTGAGCAGGAGGGACCAATGTACTaGGTTGCTCTGTATTTAAGCTTTATCCACCTGGAG	+
Preference number: 6 (lower is better) Translates to: TRQLTEQEGPMY*VALYLSFIHLE Trigger: CTCCAGGTGGATAAAGCTTAAATACAGAGCAACCAAGTACATTGGTCCCTCCTGCTCAGTCAGTTGCCTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2
CDS TCA 72 bp	CTCATGTCTGTAGAGAATACTAACCATGGAGATACTTaGGCAGGCCATGAGACCCAGACAGAAGACATCAGA	+
Preference number: 6 (lower is better) Translates to: LMSVENTNHGDT*AGHETQTEDIR Trigger: TCTGATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTATCTCCATGGTTAGTATTCTCTACAGACATGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2
CDS CAA 72 bp	GGTGGCTCTGTCTTCAGGGTAGACTTTCAGAAAGTATaGAGCACTGTGGATATGCTTGACTTGTCTCTCATG	+
Preference number: 6 (lower is better) Translates to: GGSVFRVDFQKV*STVDMLDLSLM Trigger: CATGAGAGACAAGTCAAGCATATCCACAGTGCTCAATACTTTCTGAAAGTCTACCCTGAAGACAGAGCCACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2
CDS CAA 72 bp	GTTGCTCTGTATTTAAGCTTTATCCACCTGGAGTTATaGGGGCTGGTGGTGATTGCTTGGAAACAACTCAGT	+
Preference number: 6 (lower is better) Translates to: VALYLSFIHLEL*GLVVIAWKQLS Trigger: ACTGAGTTGTTTCCAAGCAATCACCACCAGCCCCAATAACTCCAGGTGGATAAAGCTTAAATACAGAGCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2
CDS CAA 72 bp	TTTCAGAAAGTATTGAGCACTGTGGATATGCTTGACTaGTCTCTCATGTCTGTAGAGAATACTAACCATGGA	+
Preference number: 6 (lower is better) Translates to: FQKVLSTVDMLD*SLMSVENTNHG Trigger: TCCATGGTTAGTATTCTCTACAGACATGAGAGACAAGTCAAGCATATCCACAGTGCTCAATACTTTCTGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2
CDS CAA 72 bp	AAGCAGGGTAAAAACAGATTGGAACTAGATCTCATATaGGTGATGAGAACAAAGGGACAAAACATGGGAAAG	+
Preference number: 6 (lower is better) Translates to: KQGKNRLELDLI*VMRTKGQNMGK Trigger: CTTTCCCATGTTTTGTCCCTTTGTTCTCATCACCAATATGAGATCTAGTTCCAATCTGTTTTTACCCTGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000105160.5 ENSMUST00000226198.2

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