RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R198 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095125

Ensembl transcript IDs: ENSMUST00000226786.2, ENSMUST00000226909.2, ENSMUST00000227167.2

Found 249 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGCCTCATGGTGGACTCCTACTTCACTCTTCCCCCTGGGACCCTTaGCTGAGATGGGAAGTCCAGCCTTTATATCTCTTCTGCCCAGTC +
Preference number: 1 (lower is better)
Translates to: LPHGGLLLHSSPWDP*LRWEVQPLYLFCPV
Trigger: GACTGGGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACCATGAGGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp GGCTGCTGGCTCTGCCATCTTCCAATTGGTCTAGCAGGCTGCCCTTaGTGGTTCTGGGCTGGAACTGTTATTTGCCCTTCCATGATATCC +
Preference number: 1 (lower is better)
Translates to: GCWLCHLPIGLAGCP*WFWAGTVICPSMIS
Trigger: GGATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp GCTATTGGCTGCTGGCTCTGCCATCTTCCAATTGGTCTAGCAGGCTaGCCTTGCTGGTTCTGGGCTGGAACTGTTATTTGCCCTTCCATG +
Preference number: 1 (lower is better)
Translates to: AIGCWLCHLPIGLAG*PCWFWAGTVICPSM
Trigger: CATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCAGCCAATAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp GATCCTCTCCTGCCTCATGGTGGACTCCTACTTCACTCTTCCCCCTaGGACCCTTGGCTGAGATGGGAAGTCCAGCCTTTATATCTCTTC +
Preference number: 1 (lower is better)
Translates to: DPLLPHGGLLLHSSP*DPWLRWEVQPLYLF
Trigger: GAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACCATGAGGCAGGAGAGGATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 90 bp CTCATGGTGGACTCCTACTTCACTCTTCCCCCTGGGACCCTTGGCTaGGATGGGAAGTCCAGCCTTTATATCTCTTCTGCCCAGTCATTG +
Preference number: 1 (lower is better)
Translates to: LMVDSYFTLPPGTLG*DGKSSLYISSAQSL
Trigger: CAATGACTGGGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACCATGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 90 bp TGCCCTGTGCCTGTAGCCGCCAGCAGCCACGGGTTACTGGATTTCTaGAAGGAAAGATGGGGTTTGTGTGGGAAAGGTGGCTTGAGAAAT +
Preference number: 1 (lower is better)
Translates to: CPVPVAASSHGLLDF*KERWGLCGKGGLRN
Trigger: ATTTCTCAAGCCACCTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGCTGGCGGCTACAGGCACAGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp GGTGGACTCCTACTTCACTCTTCCCCCTGGGACCCTTGGCTGAGATaGGAAGTCCAGCCTTTATATCTCTTCTGCCCAGTCATTGGCTAT +
Preference number: 1 (lower is better)
Translates to: GGLLLHSSPWDPWLR*EVQPLYLFCPVIGY
Trigger: ATAGCCAATGACTGGGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp TGCTGGCTCTGCCATCTTCCAATTGGTCTAGCAGGCTGCCCTTGCTaGTTCTGGGCTGGAACTGTTATTTGCCCTTCCATGATATCCTGG +
Preference number: 1 (lower is better)
Translates to: CWLCHLPIGLAGCPC*FWAGTVICPSMISW
Trigger: CCAGGATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp CTGCACCTAACATCTGCCACTGAGCTAGCATGTTATACCAGCTATTaGCTGCTGGCTCTGCCATCTTCCAATTGGTCTAGCAGGCTGCCC +
Preference number: 1 (lower is better)
Translates to: LHLTSATELACYTSY*LLALPSSNWSSRLP
Trigger: GGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCAGCCAATAGCTGGTATAACATGCTAGCTCAGTGGCAGATGTTAGGTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 90 bp AGTATGGCCCCACATTGGGTGCCACATAATGCTAGGTTCCAGCCTTaGCACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAA +
Preference number: 1 (lower is better)
Translates to: SMAPHWVPHNARFQP*HKVWALKWKQGYLE
Trigger: TTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGTCAAGGCTGGAACCTAGCATTATGTGGCACCCAATGTGGGGCCATACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp CCATCTTCCAATTGGTCTAGCAGGCTGCCCTTGCTGGTTCTGGGCTaGAACTGTTATTTGCCCTTCCATGATATCCTGGCTCAGGGATCT +
Preference number: 1 (lower is better)
Translates to: PSSNWSSRLPLLVLG*NCYLPFHDILAQGS
Trigger: AGATCCCTGAGCCAGGATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp GCATGTTATACCAGCTATTGGCTGCTGGCTCTGCCATCTTCCAATTaGTCTAGCAGGCTGCCCTTGCTGGTTCTGGGCTGGAACTGTTAT +
Preference number: 1 (lower is better)
Translates to: ACYTSYWLLALPSSN*SSRLPLLVLGWNCY
Trigger: ATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCAGCCAATAGCTGGTATAACATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp GGTCTAGCAGGCTGCCCTTGCTGGTTCTGGGCTGGAACTGTTATTTaGCCTTCCATGATATCCTGGCTCAGGGATCTATCTCTCAGAATA +
Preference number: 1 (lower is better)
Translates to: GLAGCPCWFWAGTVI*PSMISWLRDLSLRI
Trigger: TATTCTGAGAGATAGATCCCTGAGCCAGGATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp TCTCCTTTCACACACACAAACACCTACTTCCCACAGATACTCTCATaGACACCTCACCCACACCTCACTCTTCCTTCACACTCTCTCCAC +
Preference number: 1 (lower is better)
Translates to: SPFTHTNTYFPQILS*TPHPHLTLPSHSLH
Trigger: GTGGAGAGAGTGTGAAGGAAGAGTGAGGTGTGGGTGAGGTGTGCATGAGAGTATCTGTGGGAAGTAGGTGTTTGTGTGTGTGAAAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp TGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTaGCTTTCTGAGCTTTCTCCAGCCCTATGCTTGGATAACATGCTG +
Preference number: 1 (lower is better)
Translates to: CPSPCPNFHFHSFLA*LSELSPALCLDNML
Trigger: CAGCATGTTATCCAAGCATAGGGCTGGAGAAAGCTCAGAAAGCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 90 bp AGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCCACTaGGCTAGCATGTTATACCAGCTATTGGCTGCTGGCTCTGCCATC +
Preference number: 1 (lower is better)
Translates to: SFSGHFYLPAPNICH*ASMLYQLLAAGSAI
Trigger: GATGGCAGAGCCAGCAGCCAATAGCTGGTATAACATGCTAGCTCAGTGGCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp CTCTCTCTGTCTCTCTCTCTTACTGATTCACACCTTGAGGCTACATaGACCCTGCACTCTCATGCACACTCTGCTTTTCTCCTGTGCTTT +
Preference number: 1 (lower is better)
Translates to: LSLSLSLTDSHLEAT*TLHSHAHSAFLLCF
Trigger: AAAGCACAGGAGAAAAGCAGAGTGTGCATGAGAGTGCAGGGTGCATGTAGCCTCAAGGTGTGAATCAGTAAGAGAGAGAGACAGAGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp ATAGTGTTGGTGGAATGGGAAGATGGTAAAAACCCACTTTCCACCTaGCTAGAAACCCTAAACCAGTCTACAGATTGGGCAGTGGCAAAC +
Preference number: 1 (lower is better)
Translates to: IVLVEWEDGKNPLST*LETLNQSTDWAVAN
Trigger: GTTTGCCACTGCCCAATCTGTAGACTGGTTTAGGGTTTCTAGGCAGGTGGAAAGTGGGTTTTTACCATCTTCCCATTCCACCAACACTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp ACAGCTTTCTTGCCTGGCTTTCTGAGCTTTCTCCAGCCCTATGCTTaGATAACATGCTGCCCAGTGGACATCATTAGTAAACTCAGAGTT +
Preference number: 1 (lower is better)
Translates to: TAFLPGFLSFLQPYA*ITCCPVDIISKLRV
Trigger: AACTCTGAGTTTACTAATGATGTCCACTGGGCAGCATGTTATCCAAGCATAGGGCTGGAGAAAGCTCAGAAAGCCAGGCAAGAAAGCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp GGGACAAGAAAAGGATACCTCCGCAGTCCCGCATTCTGCAAGCAATaGAGGAAGCTAGAGAACAAGGAAAATTTGATGTTTCTTCCAGTA +
Preference number: 1 (lower is better)
Translates to: GTRKGYLRSPAFCKQ*RKLENKENLMFLPV
Trigger: TACTGGAAGAAACATCAAATTTTCCTTGTTCTCTAGCTTCCTGCATTGCTTGCAGAATGCGGGACTGCGGAGGTATCCTTTTCTTGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp ATATTGAATATGAGAATATGTCTCACAATGGTCTTTTCTGTGCCCTaGAATCTCAGCTCAGATAAGGGTTACCTCCTCACCTTCACCAAC +
Preference number: 1 (lower is better)
Translates to: ILNMRICLTMVFSVP*NLSSDKGYLLTFTN
Trigger: GTTGGTGAAGGTGAGGAGGTAACCCTTATCTGAGCTGAGATTGCAGGGCACAGAAAAGACCATTGTGAGACATATTCTCATATTCAATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp CTTATCAAGTCTGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTaGCTGCACCTAACATCTGCCACTGAGCTAGCATGTTATACCAGC +
Preference number: 1 (lower is better)
Translates to: LIKSVYFSAFLAISI*LHLTSATELACYTS
Trigger: GCTGGTATAACATGCTAGCTCAGTGGCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACAGACTTGATAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 90 bp ACCCATGCCCAAGTTCATGAAATAACAACTGAGATGGAATTATTATaGATAATTCCCCAGGACAAAGCTTGGGTCATTCCCACTAAATCA +
Preference number: 1 (lower is better)
Translates to: THAQVHEITTEMELL*IIPQDKAWVIPTKS
Trigger: TGATTTAGTGGGAATGACCCAAGCTTTGTCCTGGGGAATTATTCATAATAATTCCATCTCAGTTGTTATTTCATGAACTTGGGCATGGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 90 bp GAAAGAATCAAGTTAACCCTTAACTCAGTAGTACTGTTGGCTTTCTaGTTCTGCACACTGAATACAATAACTATGCTAAGAGTCCCTATG +
Preference number: 1 (lower is better)
Translates to: ERIKLTLNSVVLLAF*FCTLNTITMLRVPM
Trigger: CATAGGGACTCTTAGCATAGTTATTGTATTCAGTGTGCAGAAGCAGAAAGCCAACAGTACTACTGAGTTAAGGGTTAACTTGATTCTTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 90 bp GATGGGGACCTATTGATTTATTCATCAGGCTTTAAGCACAATAACTaGGCAGATATTCCTAATTTCCTATGCTATCTGCATCTCGTGTTT +
Preference number: 1 (lower is better)
Translates to: DGDLLIYSSGFKHNN*ADIPNFLCYLHLVF
Trigger: AAACACGAGATGCAGATAGCATAGGAAATTAGGAATATCTGCTCAGTTATTGTGCTTAAAGCCTGATGAATAAATCAATAGGTCCCCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 90 bp TTCCCAGTTCATCAGCAGGTTCTGTTTGTAGTACAGAAAATGTTATaGAAGAAGGTATTCCTCTATTGTCCAAACAAACTGCTAAGAAAG +
Preference number: 1 (lower is better)
Translates to: FPVHQQVLFVVQKML*KKVFLYCPNKLLRK
Trigger: CTTTCTTAGCAGTTTGTTTGGACAATAGAGGAATACCTTCTTCCATAACATTTTCTGTACTACAAACAGAACCTGCTGATGAACTGGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 90 bp CCTGCCTCATGGTGGACTCCTACTTCACTCTTCCCCCTGGGACCCTaGGCTGAGATGGGAAGTCCAGCCTTTATATCTCTTCTGCCCAGT +
Preference number: 2 (lower is better)
Translates to: PASWWTPTSLFPLGP*AEMGSPAFISLLPS
Trigger: ACTGGGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACCATGAGGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTGGCAACTCCTCCTCATaGCCAACCTCATCTTCTTCC +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGGNSSS*PTSSSS
Trigger: GGAAGAAGATGAGGTTGGGCATGAGGAGGAGTTGCC...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 90 bp TGGCTGCTGGCTCTGCCATCTTCCAATTGGTCTAGCAGGCTGCCCTaGCTGGTTCTGGGCTGGAACTGTTATTTGCCCTTCCATGATATC +
Preference number: 2 (lower is better)
Translates to: WLLALPSSNWSSRLP*LVLGWNCYLPFHDI
Trigger: GATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTTACAGGGACCTTGGATaGGGCAGCATGGAAAAGGAT +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGYRDLG*GSMEKD
Trigger: ATCCTTTTCCATGCTGCCTCATCCAAGGTCCCTGTA...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCCCCCACATGTTTGGCTaGAATATCTCCCCCAGCACC +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGPHMFG*NISPST
Trigger: GGTGCTGGGGGAGATATTTCAGCCAAACATGTGGGG...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTTCTCCTGCCTCATGGTaGACTCCTACTTCACTCTTC +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGSPASW*TPTSLF
Trigger: GAAGAGTGAAGTAGGAGTCCACCATGAGGCAGGAGA...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCGCTAGGTTCCAGCCTTaGCACAAGGTCTGGGCTCTC +
Preference number: 2 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVARFQP*HKVWAL
Trigger: GAGAGCCCAGACCTTGTGTCAAGGCTGGAACCTAGC...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTAGCACTAACCCATGCTaGAATAATGGACCTTCCCAG +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGSTNPC*NNGPSQ
Trigger: CTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCT...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCGGCAACTCCTCCTCATaGCCAACCTCATCTTCTTCC +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGGNSSS*PTSSSS
Trigger: GGAAGAAGATGAGGTTGGGCATGAGGAGGAGTTGCC...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTGACCCTTGGCTGAGATaGGAAGTCCAGCCTTTATAT +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGDPWLR*EVQPLY
Trigger: ATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTC...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCTCCTGGATCCTCTCCTaGCTCATGGTGGACTCCTAC +
Preference number: 2 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVSWILS*LMVDSY
Trigger: GTAGGAGTCCACCATGAGGCAGGAGAGGATCCAGGA...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGTCCTCTCCTGCCTCATaGTGGACTCCTACTTCACTC +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKSSPAS*WTPTSL
Trigger: GAGTGAAGTAGGAGTCCACCATGAGGCAGGAGAGGA...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTAAAGCTGCCAGGCAGTaGCCAGAAAGAATCAAGTTA +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGKAARQ*PERIKL
Trigger: TAACTTGATTCTTTCTGGCCACTGCCTGGCAGCTTT...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCAGGAAGGAGAGCCTTTaGATCCCAGAGATGCATCTG +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGRKESL*IPEMHL
Trigger: CAGATGCATCTCTGGGATCCAAAGGCTCTCCTTCCT...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGTACAGGGACCTTGGATaGGGCAGCATGGAAAAGGAT +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKYRDLG*GSMEKD
Trigger: ATCCTTTTCCATGCTGCCTCATCCAAGGTCCCTGTA...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTGTACTGTTGGCTTTCTaGTTCTGCACACTGAATACA +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGVLLAF*FCTLNT
Trigger: TGTATTCAGTGTGCAGAAGCAGAAAGCCAACAGTAC...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TTGCAATTGTTCCCCAAATTTTCAAGCTTCTCCTATTATCAGGCCTGTGGCCAATCCCCCTGGGACCCTTaGCTGAGATGGGAAGTCCAG +
Preference number: 2 (lower is better)
Translates to: LQLFPKFSSFSYYQACGQSPWDP*LRWEVQ
Trigger: CTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGA...TTGGCCACAGGCCTGATAATAGGAGAAGCTTGAAAATTTGGGGAACAATTGCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 90 bp GTGGGGCTCAAACTGGAAGATTTGGGTAAGTCCTCCCTCTTGCTTTaGATGCAGAAAGGACCCTACCTGAGAAGCTGCAGTCAAAAGTTC +
Preference number: 2 (lower is better)
Translates to: VGLKLEDLGKSSLLL*MQKGPYLRSCSQKF
Trigger: GAACTTTTGACTGCAGCTTCTCAGGTAGGGTCCTTTCTGCATCAAAAGCAAGAGGGAGGACTTACCCAAATCTTCCAGTTTGAGCCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTaGCCTGGCTTTCTGAGCTTTCTCCAGCCCTATGCTTGGATAACA +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAF*PGFLSFLQPYAWIT
Trigger: TGTTATCCAAGCATAGGGCTGGAGAAAGCTCAGAAAGCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGCCTGGGACCCTTGGCTaGGATGGGAAGTCCAGCCTT +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGPGTLG*DGKSSL
Trigger: AAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGG...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTTCTCTCAGAATAACATaGCACCTATGGCTTATTGCT +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGSLRIT*HLWLIA
Trigger: AGCAATAAGCCATAGGTGTCATGTTATTCTGAGAGA...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCTGTCGTTCTGTGCTATaGACTGTTTGCCAGGTCAGC +
Preference number: 2 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVCRSVL*TVCQVS
Trigger: GCTGACCTGGCAAACAGTGCATAGCACAGAACGACA...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTATAGTGTTGGTGGAATaGGAAGATGGTAAAAACCCA +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGIVLVE*EDGKNP
Trigger: TGGGTTTTTACCATCTTCCCATTCCACCAACACTAT...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCATCCCCCTGGGACCCTTaGCTGAGATGGGAAGTCCAG +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSSPWDP*LRWEVQ
Trigger: CTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGA...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCTCTTCCTCTACTTCATaGCCATTCTTCTCCTGGATC +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGSSSTS*PFFSWI
Trigger: GATCCAGGAGAAGAATGGCCATGAAGTAGAGGAAGA...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGCCTTCCATGATATCCTaGCTCAGGGATCTATCTCTC +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKPSMIS*LRDLSL
Trigger: GAGAGATAGATCCCTGAGCCAGGATATCATGGAAGG...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTACTTTTCAGCTTTTCTaGCCATTTCTATTTGCCTGC +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGTFQLF*PFLFAC
Trigger: GCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGT...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 90 bp TGTTTCTCTGTCTCTCTCTGTCTCTCTCTCTTACTGATTCACACCTaGAGGCTACATGCACCCTGCACTCTCATGCACACTCTGCTTTTC +
Preference number: 2 (lower is better)
Translates to: CFSVSLCLSLLLIHT*RLHAPCTLMHTLLF
Trigger: GAAAAGCAGAGTGTGCATGAGAGTGCAGGGTGCATGTAGCCTCAAGGTGTGAATCAGTAAGAGAGAGAGACAGAGAGAGACAGAGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGCTCTCATGCACACTCTaGTTTTCTCCTGTGCTTTTC +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKLSCTL*FSPVLF
Trigger: GAAAAGCACAGGAGAAAAGCAGAGTGTGCATGAGAG...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGTCCCCCTGGGACCCTTaGCTGAGATGGGAAGTCCAG +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQSPWDP*LRWEVQ
Trigger: CTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGA...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGTCTTCCTCTACTTCATaGCCATTCTTCTCCTGGATC +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKSSSTS*PFFSWI
Trigger: GATCCAGGAGAAGAATGGCCATGAAGTAGAGGAAGA...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTGGAAGCAGGGATATCTaGAAGATACATAATAAACAC +
Preference number: 2 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGGSRDI*KIHNKH
Trigger: GTGTTTATTATGTATCTTCCAGATATCCCTGCTTCC...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGGATTCTCTCTACAGCTaGGGAACTTCCTTCACAGAA +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKDSLYS*GTSFTE
Trigger: TTCTGTGAAGGAAGTTCCCCAGCTGTAGAGAGAATC...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTCCTGGATCCTCTCCTaGCTCATGGTGGACTCCTAC +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGSWILS*LMVDSY
Trigger: GTAGGAGTCCACCATGAGGCAGGAGAGGATCCAGGA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATATCTCCTGCCTCATGGTaGACTCCTACTTCACTCTTC +
Preference number: 2 (lower is better)
Translates to: TQGLGSQVEAGISGRYIISPASW*TPTSLF
Trigger: GAAGAGTGAAGTAGGAGTCCACCATGAGGCAGGAGA...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCTTGGGTTCCCAATATTaGCTCTGCTTCATTTTCTCA +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGLGSQY*LCFIFS
Trigger: TGAGAAAATGAAGCAGAGCCAATATTGGGAACCCAA...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 90 bp GAATTGGTAGAGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTaGGATCCCAGAGATGCATCTGAATTTGAGGAGGAGGCAACTAAA +
Preference number: 2 (lower is better)
Translates to: ELVETSSTFDEEGEP*DPRDASEFEEEATK
Trigger: TTTAGTTGCCTCCTCCTCAAATTCAGATGCATCTCTGGGATCCAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCTCTACCAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACACCTGGGACCCTTGGCTaGGATGGGAAGTCCAGCCTT +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITPGTLG*DGKSSL
Trigger: AAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGG...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCAATACAGCAGCTCTTTaGTTTTCTCTGCTTTGTTCA +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGNTAAL*FSLLCS
Trigger: TGAACAAAGCAGAGAAAATCAAAGAGCTGCTGTATT...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGTCTCTCAGAATAACATaGCACCTATGGCTTATTGCT +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKSLRIT*HLWLIA
Trigger: AGCAATAAGCCATAGGTGTCATGTTATTCTGAGAGA...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGCTCTTTGATTTTCTCTaGTTTGTTCATTCCGTGAGC +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKLFDFL*FVHSVS
Trigger: GCTCACGGAATGAACAAAGCAGAGAAAATCAAAGAG...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCATCCTCTCCTGCCTCATaGTGGACTCCTACTTCACTC +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSSSPAS*WTPTSL
Trigger: GAGTGAAGTAGGAGTCCACCATGAGGCAGGAGAGGA...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCGTCCTCTACATTAAATaGTGCCCAGGTCGTGGGGCT +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICVLYIK*CPGRGA
Trigger: AGCCCCACGACCTGGGCACCATTTAATGTAGAGGAC...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCTTTTTGTTTACAAGCTaGCAGGCAAGTTTCAAGGCT +
Preference number: 2 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVFLFTS*QASFKA
Trigger: AGCCTTGAAACTTGCCTGTCAGCTTGTAAACAAAAA...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TTGGTAGAGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTTGGATCCCAGAATAAAATGTAAAGGGTaGAGTTTTTCCTCACCTGGC +
Preference number: 2 (lower is better)
Translates to: LVETSSTFDEEGEPLDPRIKCKG*SFSSPG
Trigger: GCCAGGTGAGGAAAAACTGCACCCTTTACATTTTAT...TCTGGGATCCAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCTCTACCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTGGCACTCCCCTGGTATaGTGTCCCCAGCAATTGTTA +
Preference number: 2 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGGTPLV*CPQQLL
Trigger: TAACAATTGCTGGGGACAGCATACCAGGGGAGTGCC...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTAGGCACTCCCCTGGTATaGTGTCCCCAGCAATTGTTA +
Preference number: 2 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLGTPLV*CPQQLL
Trigger: TAACAATTGCTGGGGACAGCATACCAGGGGAGTGCC...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGCCAAAACTACGAGTGTaGAGTTATTACATTGTTTCC +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKPKLRV*SYYIVS
Trigger: GGAAACAATGTAATAACTGCACACTCGTAGTTTTGG...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCTTTGTTTTCTACACTTaGTTATCCAGGAACAACTCT +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGFVFYT*LSRNNS
Trigger: AGAGTTGTTCCTGGATAAGCAAGTGTAGAAAACAAA...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCTCTCCTGCCTCATGGTaGACTCCTACTTCACTCTTC +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICSPASW*TPTSLF
Trigger: GAAGAGTGAAGTAGGAGTCCACCATGAGGCAGGAGA...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATATACTTCAGAGCTCGGTaGTTAGCTACTTGCATTTCC +
Preference number: 2 (lower is better)
Translates to: TQGLGSQVEAGISGRYIIYFRAR*LATCIS
Trigger: GGAAATGCAAGTAGCTAACCACCGAGCTCTGAAGTA...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGGGAAGCAGGGATATCTaGAAGATACATAATAAACAC +
Preference number: 2 (lower is better)
Translates to: AATGYWISERKDGVCVGKGSRDI*KIHNKH
Trigger: GTGTTTATTATGTATCTTCCAGATATCCCTGCTTCC...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCAGGAAGGAGAGCCTTTaGATCCCAGAGATGCATCTG +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICRKESL*IPEMHL
Trigger: CAGATGCATCTCTGGGATCCAAAGGCTCTCCTTCCT...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCAGTACAGTTATTCTCTaGTTTGTGGTAAAACAAGCA +
Preference number: 2 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGSTVIL*FVVKQA
Trigger: TGCTTGTTTTACCACAAACCAGAGAATAACTGTACT...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCAATACAGCAGCTCTTTaGTTTTCTCTGCTTTGTTCA +
Preference number: 2 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVNTAAL*FSLLCS
Trigger: TGAACAAAGCAGAGAAAATCAAAGAGCTGCTGTATT...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCAGAAAGGACCCTACCTaGGAAGCTGCAGTCAAAAGT +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICRKDPT*EAAVKS
Trigger: ACTTTTGACTGCAGCTTCTCAGGTAGGGTCCTTTCT...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACACCCCACATGTTTGGCTaGAATATCTCCCCCAGCACC +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITPHMFG*NISPST
Trigger: GGTGCTGGGGGAGATATTTCAGCCAAACATGTGGGG...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTTATTTGCCCTTCCATaGTATCCTGGCTCAGGGATC +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGLFALP*YPGSGI
Trigger: GATCCCTGAGCCAGGATATCATGGAAGGGCAAATAA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGTGTCGTTCTGTGCTATaGACTGTTTGCCAGGTCAGC +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQCRSVL*TVCQVS
Trigger: GCTGACCTGGCAAACAGTGCATAGCACAGAACGACA...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTTGTCGTTCTGTGCTATaGACTGTTTGCCAGGTCAGC +
Preference number: 2 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGCRSVL*TVCQVS
Trigger: GCTGACCTGGCAAACAGTGCATAGCACAGAACGACA...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TTGCAATTGTTCCCCAAATTTTCAAGCTTCTCCTATTATCAGGCCTGTGGCCAAGTCTTTTCTGTGCCCTaGAATCTCAGCTCAGATAAG +
Preference number: 2 (lower is better)
Translates to: LQLFPKFSSFSYYQACGQVFSVP*NLSSDK
Trigger: CTTATCTGAGCTGAGATTGCAGGGCACAGAAAAGAC...TTGGCCACAGGCCTGATAATAGGAGAAGCTTGAAAATTTGGGGAACAATTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCACAATGGTCTTTTCTGTaGCCTGCAATCTCAGCTCAG +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSQWSFL*PAISAQ
Trigger: CTGAGCTGAGATTGCAGGGCACAGAAAAGACCATTG...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCATCCTACTCACTTCTGTaGACTCTCCTCTCACTCACA +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSSYSLL*TLLSLT
Trigger: TGTGAGTGAGAGGAGAGTGCACAGAAGTGAGTAGGA...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCAGACCCTTGGCTGAGATaGGAAGTCCAGCCTTTATAT +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSDPWLR*EVQPLY
Trigger: ATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTC...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCCCTTCCATGATATCCTaGCTCAGGGATCTATCTCTC +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICPSMIS*LRDLSL
Trigger: GAGAGATAGATCCCTGAGCCAGGATATCATGGAAGG...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 90 bp AACTGCTCAGAATCAAAAACACCTTCTCCCCAGTATATTGTAGAATaGGTAGAGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTTG +
Preference number: 2 (lower is better)
Translates to: NCSESKTPSPQYIVE*VETSSTFDEEGEPL
Trigger: CAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCTCTACCAATTCTACAATATACTGGGGAGAAGGTGTTTTTGATTCTGAGCAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAGCAGTGGCAAACGTCTaGAGAAAAGGAAATGTATTA +
Preference number: 2 (lower is better)
Translates to: TQGLGSQVEAGISGRYIIAVANV*RKGNVL
Trigger: TAATACATTTCCTTTTCTTCAGACGTTTGCCACTGC...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACACACACCAAGGCCAACTaGGAAGCAGTCACACAGAGA +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITHTKAN*EAVTQR
Trigger: TCTCTGTGTGACTGCTTCTCAGTTGGCCTTGGTGTG...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTAGCACTAACCCATGCTaGAATAATGGACCTTCCCAG +
Preference number: 2 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGSTNPC*NNGPSQ
Trigger: CTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCT...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACAACCACGGAAGCCCAGTaGGGGGATACAATATGGATG +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITTTEAQ*GDTIWM
Trigger: CATCCATATTGTATCCCCTCACTGGGCTTCCGTGGT...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCTTTAGTCTCTCAGCCTaGTCTCCTAGAGCTGTCTAT +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICFSLSA*SPRAVY
Trigger: ATAGACAGCTCTAGGAGAGCAGGCTGAGAGACTAAA...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCATTCCTAATTTCCTATaGTATCTGCATCTCGTGTTT +
Preference number: 2 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVIPNFL*YLHLVF
Trigger: AAACACGAGATGCAGATAGCATAGGAAATTAGGAAT...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAAAGTACTGTTGGCTTTCTaGTTCTGCACACTGAATACA +
Preference number: 2 (lower is better)
Translates to: TRSGLSSGSRDIWKIHNKVLLAF*FCTLNT
Trigger: TGTATTCAGTGTGCAGAAGCAGAAAGCCAACAGTAC...TTTATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCAGCATTCTGCAAGCAATaGAGGAAGCTAGAGAACAAG +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSAFCKQ*RKLENK
Trigger: CTTGTTCTCTAGCTTCCTGCATTGCTTGCAGAATGC...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGGACCCTTGGCTGAGATaGGAAGTCCAGCCTTTATAT +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQDPWLR*EVQPLY
Trigger: ATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTC...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCAGTACAGTTATTCTCTaGTTTGTGGTAAAACAAGCA +
Preference number: 2 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVSTVIL*FVVKQA
Trigger: TGCTTGTTTTACCACAAACCAGAGAATAACTGTACT...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTTGATACAGGGACCTTaGATGAGGCAGCATGGAAAA +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGLIQGP*MRQHGK
Trigger: TTTTCCATGCTGCCTCATCCAAGGTCCCTGTATCAA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGGATGAGGAGGATGAATaGCAGGTTTCATACAGTACA +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGDEEDE*QVSYST
Trigger: TGTACTGTATGAAACCTGTCATTCATCCTCCTCATC...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACATACAGGGACCTTGGATaGGGCAGCATGGAAAAGGAT +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITYRDLG*GSMEKD
Trigger: ATCCTTTTCCATGCTGCCTCATCCAAGGTCCCTGTA...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGTTTAGTCTCTCAGCCTaGTCTCCTAGAGCTGTCTAT +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQFSLSA*SPRAVY
Trigger: ATAGACAGCTCTAGGAGAGCAGGCTGAGAGACTAAA...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTAGCATTCTGCAAGCAATaGAGGAAGCTAGAGAACAAG +
Preference number: 2 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLAFCKQ*RKLENK
Trigger: CTTGTTCTCTAGCTTCCTGCATTGCTTGCAGAATGC...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGTCTTCCTCTACTTCATaGCCATTCTTCTCCTGGATC +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQSSSTS*PFFSWI
Trigger: GATCCAGGAGAAGAATGGCCATGAAGTAGAGGAAGA...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAAATTGGGTTCCCAATATTaGCTCTGCTTCATTTTCTCA +
Preference number: 2 (lower is better)
Translates to: TRSGLSSGSRDIWKIHNKLGSQY*LCFIFS
Trigger: TGAGAAAATGAAGCAGAGCCAATATTGGGAACCCAA...TTTATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGAAAGCTGCCAGGCAGTaGCCAGAAAGAATCAAGTTA +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQKAARQ*PERIKL
Trigger: TAACTTGATTCTTTCTGGCCACTGCCTGGCAGCTTT...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTTGGATGAGGCAGCATaGAAAAGGATAGGAAAGGAT +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGLDEAA*KRIGKD
Trigger: ATCCTTTCCTATCCTTTTCCATGCTGCCTCATCCAA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCACCTTTATATCTCTTCTaGCCAGTCATTGGCTATTCA +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSPLYLF*PVIGYS
Trigger: TGAATAGCCAATGACTGGGCAGAAGAGATATAAAGG...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTGTACTGTTGGCTTTCTaGTTCTGCACACTGAATACA +
Preference number: 2 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGVLLAF*FCTLNT
Trigger: TGTATTCAGTGTGCAGAAGCAGAAAGCCAACAGTAC...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCATAGTGTTGGTGGAATaGGAAGATGGTAAAAACCCA +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICIVLVE*EDGKNP
Trigger: TGGGTTTTTACCATCTTCCCATTCCACCAACACTAT...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCACTTCTGCCCAGTCATTaGCTATTCAGCCTTTTATTA +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSLLPSH*LFSLLL
Trigger: TAATAAAAGGCTGAATAGCCAATGACTGGGCAGAAG...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGACTTTTCAGCTTTTCTaGCCATTTCTATTTGCCTGC +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGTFQLF*PFLFAC
Trigger: GCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGT...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTCAAATTCAAAAGAATaGCCACAGCCCACAAAGAAT +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGSNSKE*PQPTKN
Trigger: ATTCTTTGTGGGCTGTGGTCATTCTTTTGAATTTGA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTCCTTTATATCTCTTCTaGCCAGTCATTGGCTATTCA +
Preference number: 2 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGPLYLF*PVIGYS
Trigger: TGAATAGCCAATGACTGGGCAGAAGAGATATAAAGG...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACATTTAGTCTCTCAGCCTaGTCTCCTAGAGCTGTCTAT +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITFSLSA*SPRAVY
Trigger: ATAGACAGCTCTAGGAGAGCAGGCTGAGAGACTAAA...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGCCAAAACTACGAGTGTaGAGTTATTACATTGTTTCC +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGPKLRV*SYYIVS
Trigger: GGAAACAATGTAATAACTGCACACTCGTAGTTTTGG...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCAAGTATTTAACCTCCTaGCTGGCTAGGAAATTTTGT +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICKYLTS*LARKFC
Trigger: ACAAAATTTCCTAGCCAGGCAGGAGGTTAAATACTT...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTAATAGTGTTGGTGGAATaGGAAGATGGTAAAAACCCA +
Preference number: 2 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLIVLVE*EDGKNP
Trigger: TGGGTTTTTACCATCTTCCCATTCCACCAACACTAT...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTCTTCTGCCCAGTCATTaGCTATTCAGCCTTTTATTA +
Preference number: 2 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGLLPSH*LFSLLL
Trigger: TAATAAAAGGCTGAATAGCCAATGACTGGGCAGAAG...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGCTTCTGCCCAGTCATTaGCTATTCAGCCTTTTATTA +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQLLPSH*LFSLLL
Trigger: TAATAAAAGGCTGAATAGCCAATGACTGGGCAGAAG...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACATACTTCAGAGCTCGGTaGTTAGCTACTTGCATTTCC +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITYFRAR*LATCIS
Trigger: GGAAATGCAAGTAGCTAACCACCGAGCTCTGAAGTA...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCGGAAGCAGGGATATCTaGAAGATACATAATAAACAC +
Preference number: 2 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICGSRDI*KIHNKH
Trigger: GTGTTTATTATGTATCTTCCAGATATCCCTGCTTCC...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTATCAAATTCAAAAGAATaGCCACAGCCCACAAAGAAT +
Preference number: 2 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLSNSKE*PQPTKN
Trigger: ATTCTTTGTGGGCTGTGGTCATTCTTTTGAATTTGA...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCAATTCCTAATTTCCTATaGTATCTGCATCTCGTGTTT +
Preference number: 2 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSIPNFL*YLHLVF
Trigger: AAACACGAGATGCAGATAGCATAGGAAATTAGGAAT...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTTTGTTTTCTACACTTaGTTATCCAGGAACAACTCT +
Preference number: 2 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGFVFYT*LSRNNS
Trigger: AGAGTTGTTCCTGGATAAGCAAGTGTAGAAAACAAA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTCCAATCAGAAATAACTaGGGAGCACTCTTTATATCA +
Preference number: 2 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGPIRNN*GALFIS
Trigger: TGATATAAAGAGTGCTCCCCAGTTATTTCTGATTGG...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CCA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTACCAATCAGAAATAACTaGGGAGCACTCTTTATATCA +
Preference number: 2 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLPIRNN*GALFIS
Trigger: TGATATAAAGAGTGCTCCCCAGTTATTTCTGATTGG...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR TCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACAGCAGTGGCAAACGTCTaGAGAAAAGGAAATGTATTA +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITAVANV*RKGNVL
Trigger: TAATACATTTCCTTTTCTTCAGACGTTTGCCACTGC...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACAATAAAATGTAAAGGGTaGAGTTTTTCCTCACCTGGC +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITIKCKG*SFSSPG
Trigger: GCCAGGTGAGGAAAAACTGCACCCTTTACATTTTAT...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGTTTGTTTTCTACACTTaGTTATCCAGGAACAACTCT +
Preference number: 2 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQFVFYT*LSRNNS
Trigger: AGAGTTGTTCCTGGATAAGCAAGTGTAGAAAACAAA...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR GCA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACACTCTTTGATTTTCTCTaGTTTGTTCATTCCGTGAGC +
Preference number: 2 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITLFDFL*FVHSVS
Trigger: GCTCACGGAATGAACAAAGCAGAGAAAATCAAAGAG...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTTTCCCCCTGGGACCCTaGGCTGAGATGGGAAGTCCA +
Preference number: 3 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGFPLGP*AEMGSP
Trigger: TGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAA...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp CATGGCCATTCTTCTCCTGGATCCTCTCCTGCCTCATaGTGGACTCCTACTTCACTCTTCCCCCTGGGACCC +
Preference number: 3 (lower is better)
Translates to: HGHSSPGSSPAS*WTPTSLFPLGP
Trigger: GGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACCATGAGGCAGGAGAGGATCCAGGAGAAGAATGGCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp ACCAGCTATTGGCTGCTGGCTCTGCCATCTTCCAATTaGTCTAGCAGGCTGCCCTTGCTGGTTCTGGGCTGG +
Preference number: 3 (lower is better)
Translates to: TSYWLLALPSSN*SSRLPLLVLGW
Trigger: CCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCAGCCAATAGCTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp CTGCCTCATGGTGGACTCCTACTTCACTCTTCCCCCTaGGACCCTTGGCTGAGATGGGAAGTCCAGCCTTTA +
Preference number: 3 (lower is better)
Translates to: LPHGGLLLHSSP*DPWLRWEVQPL
Trigger: TAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACCATGAGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp GGATGCCTCCATCTAGGCCTGCTGCAGGCACTCCCCTaGTATGCTGTCCCCAGCAATTGTTATTCCCAAGTA +
Preference number: 3 (lower is better)
Translates to: GCLHLGLLQALP*YAVPSNCYSQV
Trigger: TACTTGGGAATAACAATTGCTGGGGACAGCATACCAGGGGAGTGCCTGCAGCAGGCCTAGATGGAGGCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp GACTCCTACTTCACTCTTCCCCCTGGGACCCTTGGCTaGGATGGGAAGTCCAGCCTTTATATCTCTTCTGCC +
Preference number: 3 (lower is better)
Translates to: DSYFTLPPGTLG*DGKSSLYISSA
Trigger: GGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp CCACATTGGGTGCCACATAATGCTAGGTTCCAGCCTTaGCACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGA +
Preference number: 3 (lower is better)
Translates to: PHWVPHNARFQP*HKVWALKWKQG
Trigger: TCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGTCAAGGCTGGAACCTAGCATTATGTGGCACCCAATGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp CTCTGCCATCTTCCAATTGGTCTAGCAGGCTGCCCTTaGTGGTTCTGGGCTGGAACTGTTATTTGCCCTTCC +
Preference number: 3 (lower is better)
Translates to: LCHLPIGLAGCP*WFWAGTVICPS
Trigger: GGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp TGCTGGCTCTGCCATCTTCCAATTGGTCTAGCAGGCTaGCCTTGCTGGTTCTGGGCTGGAACTGTTATTTGC +
Preference number: 3 (lower is better)
Translates to: CWLCHLPIGLAG*PCWFWAGTVIC
Trigger: GCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGCCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp CTACTTCACTCTTCCCCCTGGGACCCTTGGCTGAGATaGGAAGTCCAGCCTTTATATCTCTTCTGCCCAGTC +
Preference number: 3 (lower is better)
Translates to: LLHSSPWDPWLR*EVQPLYLFCPV
Trigger: GACTGGGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp GGTGGACTCCTACTTCACTCTTCCCCCTGGGACCCTTaGCTGAGATGGGAAGTCCAGCCTTTATATCTCTTC +
Preference number: 3 (lower is better)
Translates to: GGLLLHSSPWDP*LRWEVQPLYLF
Trigger: GAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TTGGTAGAGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTTGGATCCCAGATTCCCCCTGGGACCCTaGGCTGAGATGGGAAGTCCA +
Preference number: 3 (lower is better)
Translates to: LVETSSTFDEEGEPLDPRFPLGP*AEMGSP
Trigger: TGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAA...TCTGGGATCCAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCTCTACCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp GGCTGCCCTTGCTGGTTCTGGGCTGGAACTGTTATTTaGCCTTCCATGATATCCTGGCTCAGGGATCTATCT +
Preference number: 3 (lower is better)
Translates to: GCPCWFWAGTVI*PSMISWLRDLS
Trigger: AGATAGATCCCTGAGCCAGGATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp TGCCATCTTCCAATTGGTCTAGCAGGCTGCCCTTGCTaGTTCTGGGCTGGAACTGTTATTTGCCCTTCCATG +
Preference number: 3 (lower is better)
Translates to: CHLPIGLAGCPC*FWAGTVICPSM
Trigger: CATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp GTGCCCTGCAATCTCAGCTCAGATAAGGGTTACCTCCTCACCTTCACCAACCCTAAACCAGTCTACAGATaGGGCAGTGGCAAACGTCTG +
Preference number: 3 (lower is better)
Translates to: VPCNLSSDKGYLLTFTNPKPVYR*GSGKRL
Trigger: CAGACGTTTGCCACTGCCCAATCTGTAGACTGGTTT...AGGGTTGGTGAAGGTGAGGAGGTAACCCTTATCTGAGCTGAGATTGCAGGGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTTCGGTGGTTAGCTACTaGCATTTCCTTGTGAAGCTC +
Preference number: 3 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGSVVSY*HFLVKL
Trigger: GAGCTTCACAAGGAAATGCAAGTAGCTAACCACCGA...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCGAGGAAGGAGAGCCTTaGGATCCCAGAGATGCATCT +
Preference number: 3 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGEEGEP*DPRDAS
Trigger: AGATGCATCTCTGGGATCCAAAGGCTCTCCTTCCTC...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTCTTGGGTTCCCAATATaGGCTCTGCTTCATTTTCTC +
Preference number: 3 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGLGFPI*ALLHFL
Trigger: GAGAAAATGAAGCAGAGCCAATATTGGGAACCCAAG...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGATCTCTGGGAAATGCTaGTCCCTCACCTTGCCCCAA +
Preference number: 3 (lower is better)
Translates to: AATGYWISERKDGVCVGKISGKC*SLTLPQ
Trigger: TTGGGGCAAGGTGAGGGACAAGCATTTCCCAGAGAT...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp CTGAACCGAGACTGTCGTTCTGTGCTATGCACTGTTTaGCAGGTCAGCCTATGCCACATAGCAGAGAGCATA +
Preference number: 3 (lower is better)
Translates to: LNRDCRSVLCTV*QVSLCHIAESI
Trigger: TATGCTCTCTGCTATGTGGCATAGGCTGACCTGGCAAACAGTGCATAGCACAGAACGACAGTCTCGGTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp TTTGTGGTCCTGAACCGAGACTGTCGTTCTGTGCTATaGACTGTTTGCCAGGTCAGCCTATGCCACATAGCA +
Preference number: 3 (lower is better)
Translates to: FVVLNRDCRSVL*TVCQVSLCHIA
Trigger: TGCTATGTGGCATAGGCTGACCTGGCAAACAGTGCATAGCACAGAACGACAGTCTCGGTTCAGGACCACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp AATTGGTCTAGCAGGCTGCCCTTGCTGGTTCTGGGCTaGAACTGTTATTTGCCCTTCCATGATATCCTGGCT +
Preference number: 3 (lower is better)
Translates to: NWSSRLPLLVLG*NCYLPFHDILA
Trigger: AGCCAGGATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp CTTCCAATTGGTCTAGCAGGCTGCCCTTGCTGGTTCTaGGCTGGAACTGTTATTTGCCCTTCCATGATATCC +
Preference number: 3 (lower is better)
Translates to: LPIGLAGCPCWF*AGTVICPSMIS
Trigger: GGATATCATGGAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TCTTTTCTGTGCCCTGCAATCTCAGCTCAGATAAGGGTTACCTCCTCACCTTCATGTGCTATGCACTGTTaGCCAGGTCAGCCTATGCCA +
Preference number: 3 (lower is better)
Translates to: SFLCPAISAQIRVTSSPSCAMHC*PGQPMP
Trigger: TGGCATAGGCTGACCTGGCAAACAGTGCATAGCACA...TGAAGGTGAGGAGGTAACCCTTATCTGAGCTGAGATTGCAGGGCACAGAAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTTCTTCTGCCCAGTCATaGGCTATTCAGCCTTTTATT +
Preference number: 3 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGSSAQS*AIQPFI
Trigger: AATAAAAGGCTGAATAGCCAATGACTGGGCAGAAGA...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAAATTCCCCCTGGGACCCTaGGCTGAGATGGGAAGTCCA +
Preference number: 3 (lower is better)
Translates to: TRSGLSSGSRDIWKIHNKFPLGP*AEMGSP
Trigger: TGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAA...TTTATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCGGTAAGTCCTCCCTCTaGCTTTTGATGCAGAAAGGA +
Preference number: 3 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGGKSSL*LLMQKG
Trigger: TCCTTTCTGCATCAAAAGCAAGAGGGAGGACTTACC...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp GGCCATTTCTATTTGCCTGCACCTAACATCTGCCACTaGGCTAGCATGTTATACCAGCTATTGGCTGCTGGC +
Preference number: 3 (lower is better)
Translates to: GHFYLPAPNICH*ASMLYQLLAAG
Trigger: GCCAGCAGCCAATAGCTGGTATAACATGCTAGCTCAGTGGCAGATGTTAGGTGCAGGCAAATAGAAATGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp CTCTTACTGATTCACACCTTGAGGCTACATGCACCCTaGACTCTCATGCACACTCTGCTTTTCTCCTGTGCT +
Preference number: 3 (lower is better)
Translates to: LLLIHTLRLHAP*TLMHTLLFSCA
Trigger: AGCACAGGAGAAAAGCAGAGTGTGCATGAGAGTGCAGGGTGCATGTAGCCTCAAGGTGTGAATCAGTAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp CCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTaGCTTTCTGAGCTTTCTCCAGCCCTATGCTTGGAT +
Preference number: 3 (lower is better)
Translates to: PCPNFHFHSFLA*LSELSPALCLD
Trigger: ATCCAAGCATAGGGCTGGAGAAAGCTCAGAAAGCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp ACATCTGCCACTGAGCTAGCATGTTATACCAGCTATTaGCTGCTGGCTCTGCCATCTTCCAATTGGTCTAGC +
Preference number: 3 (lower is better)
Translates to: TSATELACYTSY*LLALPSSNWSS
Trigger: GCTAGACCAATTGGAAGATGGCAGAGCCAGCAGCCAATAGCTGGTATAACATGCTAGCTCAGTGGCAGATGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGAGACCCATGATAGTGTaGGTGGAATGGGAAGATGGT +
Preference number: 3 (lower is better)
Translates to: AATGYWISERKDGVCVGKRPMIV*VEWEDG
Trigger: ACCATCTTCCCATTCCACCAACACTATCATGGGTCT...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATATCATGGAGAACTCCCTaGGCAACTCCTCCTCATGCC +
Preference number: 3 (lower is better)
Translates to: TQGLGSQVEAGISGRYIISWRTP*ATPPHA
Trigger: GGCATGAGGAGGAGTTGCCAAGGGAGTTCTCCATGA...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGCTCAAACTGGAAGATTaGGGTAAGTCCTCCCTCTTG +
Preference number: 3 (lower is better)
Translates to: AATGYWISERKDGVCVGKLKLED*GKSSLL
Trigger: CAAGAGGGAGGACTTACCCAAATCTTCCAGTTTGAG...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCTATTCTAGTCCACATTaGCCACATGGCCCATTACCA +
Preference number: 3 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGYSSPH*PHGPLP
Trigger: TGGTAATGGGCCATGTGGCAAATGTGGACTAGAATA...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp GGGACAAGAAAAGGATACCTCCGCAGTCCCGCATTCTaGAAGCAATGCAGGAAGCTAGAGAACAAGGAAAAT +
Preference number: 3 (lower is better)
Translates to: GTRKGYLRSPAF*KQCRKLENKEN
Trigger: ATTTTCCTTGTTCTCTAGCTTCCTGCATTGCTTGCAGAATGCGGGACTGCGGAGGTATCCTTTTCTTGTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp AGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTTaGATCCCAGAGATGCATCTGAATTTGAGGAGGAGG +
Preference number: 3 (lower is better)
Translates to: RLHPPLMRKESL*IPEMHLNLRRR
Trigger: CCTCCTCCTCAAATTCAGATGCATCTCTGGGATCCAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAAATGTGCTATGCACTGTTaGCCAGGTCAGCCTATGCCA +
Preference number: 3 (lower is better)
Translates to: TRSGLSSGSRDIWKIHNKCAMHC*PGQPMP
Trigger: TGGCATAGGCTGACCTGGCAAACAGTGCATAGCACA...TTTATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCATCATGGAGAACTCCCTaGGCAACTCCTCCTCATGCC +
Preference number: 3 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSSWRTP*ATPPHA
Trigger: GGCATGAGGAGGAGTTGCCAAGGGAGTTCTCCATGA...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp TTTTGTTCATCTCTGGGAAATGCTTGTCCCTCACCTTaGCCCAACTTTCACTTTCACAGCTTTCTTGCCTGG +
Preference number: 3 (lower is better)
Translates to: FCSSLGNACPSP*PNFHFHSFLAW
Trigger: CCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCATTTCCCAGAGATGAACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CCA 72 bp TTGCCTGGCTTTCTGAGCTTTCTCCAGCCCTATGCTTaGATAACATGCTGCCCAGTGGACATCATTAGTAAA +
Preference number: 3 (lower is better)
Translates to: LPGFLSFLQPYA*ITCCPVDIISK
Trigger: TTTACTAATGATGTCCACTGGGCAGCATGTTATCCAAGCATAGGGCTGGAGAAAGCTCAGAAAGCCAGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTATCATGGAGAACTCCCTaGGCAACTCCTCCTCATGCC +
Preference number: 3 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLSWRTP*ATPPHA
Trigger: GGCATGAGGAGGAGTTGCCAAGGGAGTTCTCCATGA...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ATGCTTGTCCCTCACCTTGCCCCAACTTTCACTTTCACAGCTTTCTTGCCTGGCTGCCCTAATCTTTTATaGTTACTCCAAAACCAGGTA +
Preference number: 3 (lower is better)
Translates to: MLVPHLAPTFTFTAFLPGCPNLL*LLQNQV
Trigger: TACCTGGTTTTGGAGTAACAATAAAAGATTAGGGCA...GCCAGGCAAGAAAGCTGTGAAAGTGAAAGTTGGGGCAAGGTGAGGGACAAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCAGAGGAAGGAGAGCCTTaGGATCCCAGAGATGCATCT +
Preference number: 3 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSEEGEP*DPRDAS
Trigger: AGATGCATCTCTGGGATCCAAAGGCTCTCCTTCCTC...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp GGGAACTTCCTTCACAGAATAACCACGGAAGCCCAGTaGGGGGATACAATATGGATGATCCTTAGTTGTACT +
Preference number: 3 (lower is better)
Translates to: GNFLHRITTEAQ*GDTIWMILSCT
Trigger: AGTACAACTAAGGATCATCCATATTGTATCCCCTCACTGGGCTTCCGTGGTTATTCTGTGAAGGAAGTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp ATATCCTGGCTCAGGGATCTATCTCTCAGAATAACATaGCACCTATGGCTTATTGCTCCTCAGAGCTCTGCT +
Preference number: 3 (lower is better)
Translates to: ISWLRDLSLRIT*HLWLIAPQSSA
Trigger: AGCAGAGCTCTGAGGAGCAATAAGCCATAGGTGTCATGTTATTCTGAGAGATAGATCCCTGAGCCAGGATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp CTGAGCTTTCTCCAGCCCTATGCTTGGATAACATGCTaGCCAGTGGACATCATTAGTAAACTCAGAGTTTTC +
Preference number: 3 (lower is better)
Translates to: LSFLQPYAWITC*PVDIISKLRVF
Trigger: GAAAACTCTGAGTTTACTAATGATGTCCACTGGGCAGCATGTTATCCAAGCATAGGGCTGGAGAAAGCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTATGTGCTATGCACTGTTaGCCAGGTCAGCCTATGCCA +
Preference number: 3 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLCAMHC*PGQPMP
Trigger: TGGCATAGGCTGACCTGGCAAACAGTGCATAGCACA...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGAAACCAGTCTACAGATaGGGCAGTGGCAAACGTCTG +
Preference number: 3 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGKPVYR*GSGKRL
Trigger: CAGACGTTTGCCACTGCCCAATCTGTAGACTGGTTT...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATATGCTGTCCCCAGCAATaGTTATTCCCAAGTAAGAGA +
Preference number: 3 (lower is better)
Translates to: TQGLGSQVEAGISGRYIICCPQQ*LFPSKR
Trigger: TCTCTTACTTGGGAATAACAATTGCTGGGGACAGCA...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTTACTGATTCACACCTaGAGGCTACATGCACCCTGC +
Preference number: 3 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGLLIHT*RLHAPC
Trigger: GCAGGGTGCATGTAGCCTCAAGGTGTGAATCAGTAA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCGATCATCTTCACTGTTaGCTGCAGACTGCTGTCCTC +
Preference number: 3 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICDHLHC*LQTAVL
Trigger: GAGGACAGCAGTCTGCAGCAAACAGTGAAGATGATC...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGATGTTATACCAGCTATaGGCTGCTGGCTCTGCCATC +
Preference number: 3 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGMLYQL*AAGSAI
Trigger: GATGGCAGAGCCAGCAGCCAATAGCTGGTATAACAT...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp TCGTGTTTAGAGTTACTTTCATTTAGTCTCTCAGCCTaGTCTCCTAGAGCTGTCTATGCTCATGGAGAACTC +
Preference number: 3 (lower is better)
Translates to: SCLELLSFSLSA*SPRAVYAHGEL
Trigger: GAGTTCTCCATGAGCATAGACAGCTCTAGGAGAGCAGGCTGAGAGACTAAATGAAAGTAACTCTAAACACGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp AAAGGATACCTCCGCAGTCCCGCATTCTGCAAGCAATaGAGGAAGCTAGAGAACAAGGAAAATTTGATGTTT +
Preference number: 3 (lower is better)
Translates to: KGYLRSPAFCKQ*RKLENKENLMF
Trigger: AAACATCAAATTTTCCTTGTTCTCTAGCTTCCTGCATTGCTTGCAGAATGCGGGACTGCGGAGGTATCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp TTGCTTTTGATGCAGAAAGGACCCTACCTGAGAAGCTaGAGTCAAAAGTTCGGAGAAAGAATAGGTAGGAAG +
Preference number: 3 (lower is better)
Translates to: LLLMQKGPYLRS*SQKFGERIGRK
Trigger: CTTCCTACCTATTCTTTCTCCGAACTTTTGACTGCAGCTTCTCAGGTAGGGTCCTTTCTGCATCAAAAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCAGACCCATGATAGTGTaGGTGGAATGGGAAGATGGT +
Preference number: 3 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICRPMIV*VEWEDG
Trigger: ACCATCTTCCCATTCCACCAACACTATCATGGGTCT...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCATCGGTGGTTAGCTACTaGCATTTCCTTGTGAAGCTC +
Preference number: 3 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSSVVSY*HFLVKL
Trigger: GAGCTTCACAAGGAAATGCAAGTAGCTAACCACCGA...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAAATTTCAAGGCTTGAGGTaGCTCTTTCTCTGTCTCTGT +
Preference number: 3 (lower is better)
Translates to: TRSGLSSGSRDIWKIHNKFQGLR*LFLCLC
Trigger: ACAGAGACAGAGAAAGAGCAACCTCAAGCCTTGAAA...TTTATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCGGCAAGTTTCAAGGCTaGAGGTTGCTCTTTCTCTGT +
Preference number: 3 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICGKFQG*RLLFLC
Trigger: ACAGAGAAAGAGCAACCTCAAGCCTTGAAACTTGCC...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TTTGTGGTAAAACAAGCACTAACCCATGCTGAAATAATGGACCTTCCCAGTTCAGGCAAGTTTCAAGGCTaGAGGTTGCTCTTTCTCTGT +
Preference number: 3 (lower is better)
Translates to: FVVKQALTHAEIMDLPSSGKFQG*RLLFLC
Trigger: ACAGAGAAAGAGCAACCTCAAGCCTTGAAACTTGCC...TGAACTGGGAAGGTCCATTATTTCAGCATGGGTTAGTGCTTGTTTTACCACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGCTCAAACTGGAAGATTaGGGTAAGTCCTCCCTCTTG +
Preference number: 3 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGLKLED*GKSSLL
Trigger: CAAGAGGGAGGACTTACCCAAATCTTCCAGTTTGAG...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTGCCTGCACCTAACATCTGCCTCAAACTGGAAGATTaGGGTAAGTCCTCCCTCTTG +
Preference number: 3 (lower is better)
Translates to: CLLFSFSGHFYLPAPNICLKLED*GKSSLL
Trigger: CAAGAGGGAGGACTTACCCAAATCTTCCAGTTTGAG...GCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp TCTGTTTACTTTTCAGCTTTTCTGGCCATTTCTATTTaGCTGCACCTAACATCTGCCACTGAGCTAGCATGT +
Preference number: 3 (lower is better)
Translates to: SVYFSAFLAISI*LHLTSATELAC
Trigger: ACATGCTAGCTCAGTGGCAGATGTTAGGTGCAGGCAAATAGAAATGGCCAGAAAAGCTGAAAAGTAAACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTAGACCCATGATAGTGTaGGTGGAATGGGAAGATGGT +
Preference number: 3 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGRPMIV*VEWEDG
Trigger: ACCATCTTCCCATTCCACCAACACTATCATGGGTCT...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTTCGGTGGTTAGCTACTaGCATTTCCTTGTGAAGCTC +
Preference number: 3 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGSVVSY*HFLVKL
Trigger: GAGCTTCACAAGGAAATGCAAGTAGCTAACCACCGA...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGTTTCAAGGCTTGAGGTaGCTCTTTCTCTGTCTCTGT +
Preference number: 3 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGFQGLR*LFLCLC
Trigger: ACAGAGACAGAGAAAGAGCAACCTCAAGCCTTGAAA...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp ACCCTTAACTCAGTAGTACTGTTGGCTTTCTGCTTCTaGACACTGAATACAATAACTATGCTAAGAGTCCCT +
Preference number: 3 (lower is better)
Translates to: TLNSVVLLAFCF*TLNTITMLRVP
Trigger: AGGGACTCTTAGCATAGTTATTGTATTCAGTGTGCAGAAGCAGAAAGCCAACAGTACTACTGAGTTAAGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp TGTGGTGGTTTTATAGTTTCATTATGGGTCAAGGTGAATCCAGTGAGCAATCTACTTGGGTTCCCAATATaGGCTCTGCTTCATTTTCTC +
Preference number: 3 (lower is better)
Translates to: CGGFIVSLWVKVNPVSNLLGFPI*ALLHFL
Trigger: GAGAAAATGAAGCAGAGCCAATATTGGGAACCCAAG...TAGATTGCTCACTGGATTCACCTTGACCCATAATGAAACTATAAAACCACCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ATAAGGATGAGGAGGATGAATGACAGGTTTCATACAGTACAGTTATTCTCTGGTTCTTCTGCCCAGTCATaGGCTATTCAGCCTTTTATT +
Preference number: 3 (lower is better)
Translates to: IRMRRMNDRFHTVQLFSGSSAQS*AIQPFI
Trigger: AATAAAAGGCTGAATAGCCAATGACTGGGCAGAAGA...ACCAGAGAATAACTGTACTGTATGAAACCTGTCATTCATCCTCCTCATCCTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp CTGGCTAGCTCCCAAATAATTGAGATGGGGACCTATTaGTTTATTCATCAGGCTTTAAGCACAATAACTGAG +
Preference number: 3 (lower is better)
Translates to: LASSQIIEMGTY*FIHQALSTITE
Trigger: CTCAGTTATTGTGCTTAAAGCCTGATGAATAAATCAATAGGTCCCCATCTCAATTATTTGGGAGCTAGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp CTCTCCCTACATACTCTCACACTCTCACCTTTAACTTaGCCTAATCTTTTATTGTTACTCCAAAACCAGGTA +
Preference number: 3 (lower is better)
Translates to: LSLHTLTLSPLT*PNLLLLLQNQV
Trigger: TACCTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAGAGTATGTAGGGAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp AACATGACACCTATGGCTTATTGCTCCTCAGAGCTCTaGTGTACTCCTGGCTTTCTTTTAAAAGTATTTAAC +
Preference number: 3 (lower is better)
Translates to: NMTPMAYCSSEL*CTPGFLLKVFN
Trigger: GTTAAATACTTTTAAAAGAAAGCCAGGAGTACAGCAGAGCTCTGAGGAGCAATAAGCCATAGGTGTCATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR-3UTR CAA 90 bp ACATCATTAGTAAACTCAGAGTTTTCTACCCATGCCCAAGTTCATGAAATAACATATTCTAGTCCACATTaGCCACATGGCCCATTACCA +
Preference number: 3 (lower is better)
Translates to: TSLVNSEFSTHAQVHEITYSSPH*PHGPLP
Trigger: TGGTAATGGGCCATGTGGCAAATGTGGACTAGAATA...TGTTATTTCATGAACTTGGGCATGGGTAGAAAACTCTGAGTTTACTAATGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp CAAGTTCATGAAATAACAACTGAGATGGAATTATTATaGATAATTCCCCAGGACAAAGCTTGGGTCATTCCC +
Preference number: 3 (lower is better)
Translates to: QVHEITTEMELL*IIPQDKAWVIP
Trigger: GGGAATGACCCAAGCTTTGTCCTGGGGAATTATTCATAATAATTCCATCTCAGTTGTTATTTCATGAACTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp AAGTTAACCCTTAACTCAGTAGTACTGTTGGCTTTCTaGTTCTGCACACTGAATACAATAACTATGCTAAGA +
Preference number: 3 (lower is better)
Translates to: KLTLNSVVLLAF*FCTLNTITMLR
Trigger: TCTTAGCATAGTTATTGTATTCAGTGTGCAGAAGCAGAAAGCCAACAGTACTACTGAGTTAAGGGTTAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR TCA 72 bp CTTCCAGTAGTAAGCAACGATGATAAAGATCCAGAATaGGAACCTATCTTCTGTAAACTTGTTACAGAATTA +
Preference number: 3 (lower is better)
Translates to: LPVVSNDDKDPE*EPIFCKLVTEL
Trigger: TAATTCTGTAACAAGTTTACAGAAGATAGGTTCTCATTCTGGATCTTTATCATCGTTGCTTACTACTGGAAG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR GCA 72 bp ATAACTGAGCAGATATTCCTAATTTCCTATGCTATCTaGATCTCGTGTTTAGAGTTACTTTCATTTAGTCTC +
Preference number: 3 (lower is better)
Translates to: ITEQIFLISYAI*ISCLELLSFSL
Trigger: GAGACTAAATGAAAGTAACTCTAAACACGAGATGCAGATAGCATAGGAAATTAGGAATATCTGCTCAGTTAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp GCTCTGCCATCTTCCAATTGGTCTAGCAGGCTGCCCTaGCTGGTTCTGGGCTGGAACTGTTATTTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: ALPSSNWSSRLP*LVLGWNCYLPF
Trigger: GAAGGGCAAATAACAGTTCCAGCCCAGAACCAGCAAGGGCAGCCTGCTAGACCAATTGGAAGATGGCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp CCTGAACCGAGACTGTCGTTCTGTGCTATGCACTGTTaGCCAGGTCAGCCTATGCCACATAGCAGAGAGCAT +
Preference number: 4 (lower is better)
Translates to: PEPRLSFCAMHC*PGQPMPHSREH
Trigger: ATGCTCTCTGCTATGTGGCATAGGCTGACCTGGCAAACAGTGCATAGCACAGAACGACAGTCTCGGTTCAGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp TGGTGGACTCCTACTTCACTCTTCCCCCTGGGACCCTaGGCTGAGATGGGAAGTCCAGCCTTTATATCTCTT +
Preference number: 4 (lower is better)
Translates to: WWTPTSLFPLGP*AEMGSPAFISL
Trigger: AAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAAGGGTCCCAGGGGGAAGAGTGAAGTAGGAGTCCACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR GCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTTGGAGGGGAGTTGTTTaGAAACCTGGAGCTATAAAG +
Preference number: 4 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGWRGVV*KPGAIK
Trigger: CTTTATAGCTCCAGGTTTGCAAACAACTCCCCTCCA...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CCA 90 bp TTGGTAGAGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTTGGATCCCAGAACAGATGGAGAGCCATaGAACCACTGCTCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: LVETSSTFDEEGEPLDPRTDGEP*NHCSSP
Trigger: TGGGCTGGAGCAGTGGTTCCATGGCTCTCCATCTGT...TCTGGGATCCAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCTCTACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CCA 90 bp TTGGCTGAGATGGGAAGTCCAGCCTTTATATCTCTTCTGCCCAGTCATTGGCTAACAGATGGAGAGCCATaGAACCACTGCTCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: LAEMGSPAFISLLPSHWLTDGEP*NHCSSP
Trigger: TGGGCTGGAGCAGTGGTTCCATGGCTCTCCATCTGT...TAGCCAATGACTGGGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR TCA 90 bp AGTGGGCTAGCAACTGTGGCAGAAATAGGTCTGAGCCAGCCTGCTCAAGGTGGTATGATGTCTGTGGTTTaGGTTTTGTCCAAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: SGLATVAEIGLSQPAQGGMMSVV*VLSKRW
Trigger: CCACCTTTTGGACAAAACTCAAACCACAGACATCAT...ACCACCTTGAGCAGGCTGGCTCAGACCTATTTCTGCCACAGTTGCTAGCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp GTCTCTCTCTGTCTCTCTCTCTTACTGATTCACACCTaGAGGCTACATGCACCCTGCACTCTCATGCACACT +
Preference number: 4 (lower is better)
Translates to: VSLCLSLLLIHT*RLHAPCTLMHT
Trigger: AGTGTGCATGAGAGTGCAGGGTGCATGTAGCCTCAAGGTGTGAATCAGTAAGAGAGAGAGACAGAGAGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR TCA 90 bp GTGCCCTGCAATCTCAGCTCAGATAAGGGTTACCTCCTCACCTTCACCAACCCTATGATGTCTGTGGTTTaGGTTTTGTCCAAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: VPCNLSSDKGYLLTFTNPMMSVV*VLSKRW
Trigger: CCACCTTTTGGACAAAACTCAAACCACAGACATCAT...AGGGTTGGTGAAGGTGAGGAGGTAACCCTTATCTGAGCTGAGATTGCAGGGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR GCA 90 bp ACCAGCATTTGTGGTCCTGAACCGAGACTGTCGTTCTGTGCTATGCACTGTTTGGCCCCGTGCCATCCTTaGCAGATAAACTGTAGTTTT +
Preference number: 4 (lower is better)
Translates to: TSICGPEPRLSFCAMHCLAPCHP*QINCSF
Trigger: AAAACTACAGTTTATCTGGCAAGGATGGCACGGGGC...CAAACAGTGCATAGCACAGAACGACAGTCTCGGTTCAGGACCACAAATGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
CDS-3UTR CCA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAACAGATGGAGAGCCATaGAACCACTGCTCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: TQGLGSQVEAGISGRYIITDGEP*NHCSSP
Trigger: TGGGCTGGAGCAGTGGTTCCATGGCTCTCCATCTGT...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp GAGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTaGGATCCCAGAGATGCATCTGAATTTGAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: ETSSTFDEEGEP*DPRDASEFEEE
Trigger: CTCCTCCTCAAATTCAGATGCATCTCTGGGATCCAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp GAAACCCATCTCCCACCATGCCAGGATCTCATTGCTTaGTCAGGATCATGTCAGGAAAATAGGTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: ETHLPPCQDLIA*SGSCQENRFSL
Trigger: GAGGCTGAACCTATTTTCCTGACATGATCCTGACAAAGCAATGAGATCCTGGCATGGTGGGAGATGGGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR GCA 90 bp TTGGCTGAGATGGGAAGTCCAGCCTTTATATCTCTTCTGCCCAGTCATTGGCTAGCCCCGTGCCATCCTTaGCAGATAAACTGTAGTTTT +
Preference number: 4 (lower is better)
Translates to: LAEMGSPAFISLLPSHWLAPCHP*QINCSF
Trigger: AAAACTACAGTTTATCTGGCAAGGATGGCACGGGGC...TAGCCAATGACTGGGCAGAAGAGATATAAAGGCTGGACTTCCCATCTCAGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
CDS-3UTR CCA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGAGAAAGGGAAGAACTTaGCATGATGTCTGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: AATGYWISERKDGVCVGKRKGRT*HDVCGL
Trigger: CAAACCACAGACATCATGCCAAGTTCTTCCCTTTCT...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CCA 90 bp TTGGTAGAGACTTCATCCACCTTTGATGAGGAAGGAGAGCCTTTGGATCCCAGAAGAAAGGGAAGAACTTaGCATGATGTCTGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: LVETSSTFDEEGEPLDPRRKGRT*HDVCGL
Trigger: CAAACCACAGACATCATGCCAAGTTCTTCCCTTTCT...TCTGGGATCCAAAGGCTCTCCTTCCTCATCAAAGGTGGATGAAGTCTCTACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CCA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCAGAAAGGGAAGAACTTaGCATGATGTCTGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVRKGRT*HDVCGL
Trigger: CAAACCACAGACATCATGCCAAGTTCTTCCCTTTCT...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp TTCCACCTGCCTAGAAACCCTAAACCAGTCTACAGATaGGGCAGTGGCAAACGTCTGAAGAAAAGGAAATGT +
Preference number: 4 (lower is better)
Translates to: FHLPRNPKPVYR*GSGKRLKKRKC
Trigger: ACATTTCCTTTTCTTCAGACGTTTGCCACTGCCCAATCTGTAGACTGGTTTAGGGTTTCTAGGCAGGTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp GAAAATAGGTTCAGCCTCTCAGCAGTTAGTGGTGTCTaGAAGAAAAGCCGCACATGTGGCAGAACAATAGAC +
Preference number: 4 (lower is better)
Translates to: ENRFSLSAVSGV*KKSRTCGRTID
Trigger: GTCTATTGTTCTGCCACATGTGCGGCTTTTCTTCAAGACACCACTAACTGCTGAGAGGCTGAACCTATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR TCA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAATGATGTCTGTGGTTTaGGTTTTGTCCAAAAGGTGG +
Preference number: 4 (lower is better)
Translates to: TQGLGSQVEAGISGRYIIMMSVV*VLSKRW
Trigger: CCACCTTTTGGACAAAACTCAAACCACAGACATCAT...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR GCA 90 bp TTGCAATTGTTCCCCAAATTTTCAAGCTTCTCCTATTATCAGGCCTGTGGCCAATGGAGGGGAGTTGTTTaGAAACCTGGAGCTATAAAG +
Preference number: 4 (lower is better)
Translates to: LQLFPKFSSFSYYQACGQWRGVV*KPGAIK
Trigger: CTTTATAGCTCCAGGTTTGCAAACAACTCCCCTCCA...TTGGCCACAGGCCTGATAATAGGAGAAGCTTGAAAATTTGGGGAACAATTGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR GCA 90 bp ACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAAATGGAGGGGAGTTGTTTaGAAACCTGGAGCTATAAAG +
Preference number: 4 (lower is better)
Translates to: TRSGLSSGSRDIWKIHNKWRGVV*KPGAIK
Trigger: CTTTATAGCTCCAGGTTTGCAAACAACTCCCCTCCA...TTTATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp AAGGAGAGCCTTTGGATCCCAGAGATGCATCTGAATTaGAGGAGGAGGCAACTAAATATCATAAACCTGAAT +
Preference number: 4 (lower is better)
Translates to: KESLWIPEMHLN*RRRQLNIINLN
Trigger: ATTCAGGTTTATGATATTTAGTTGCCTCCTCCTCAAATTCAGATGCATCTCTGGGATCCAAAGGCTCTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp GAATCAAAAACACCTTCTCCCCAGTATATTGTAGAATaGGTAGAGACTTCATCCACCTTTGATGAGGAAGGA +
Preference number: 4 (lower is better)
Translates to: ESKTPSPQYIVE*VETSSTFDEEG
Trigger: TCCTTCCTCATCAAAGGTGGATGAAGTCTCTACCAATTCTACAATATACTGGGGAGAAGGTGTTTTTGATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CCA 90 bp ACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAAAAGGAAGATTATAGTGTaGATAACATTACTCCAGTTC +
Preference number: 4 (lower is better)
Translates to: TRSGLSSGSRDIWKIHNKRKIIV*ITLLQF
Trigger: GAACTGGAGTAATGTTATCCACACTATAATCTTCCT...TTTATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
CDS-3UTR CCA 90 bp AAACCAGTCTACAGATTGGGCAGTGGCAAACGTCTGAAGAAAAGGAAATGTATTAGGAAGATTATAGTGTaGATAACATTACTCCAGTTC +
Preference number: 4 (lower is better)
Translates to: KPVYRLGSGKRLKKRKCIRKIIV*ITLLQF
Trigger: GAACTGGAGTAATGTTATCCACACTATAATCTTCCT...AATACATTTCCTTTTCTTCAGACGTTTGCCACTGCCCAATCTGTAGACTGGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
3UTR CAA 72 bp GAAAGAATCAAGTTAACCCTTAACTCAGTAGTACTGTaGGCTTTCTGCTTCTGCACACTGAATACAATAACT +
Preference number: 4 (lower is better)
Translates to: ERIKLTLNSVVL*AFCFCTLNTIT
Trigger: AGTTATTGTATTCAGTGTGCAGAAGCAGAAAGCCAACAGTACTACTGAGTTAAGGGTTAACTTGATTCTTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
3UTR CAA 72 bp AGTACAGAAAATGTTATGGAAGAAGGTATTCCTCTATaGTCCAAACAAACTGCTAAGAAAGAAAACTGCTCA +
Preference number: 4 (lower is better)
Translates to: STENVMEEGIPL*SKQTAKKENCS
Trigger: TGAGCAGTTTTCTTTCTTAGCAGTTTGTTTGGACAATAGAGGAATACCTTCTTCCATAACATTTTCTGTACT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp ACCAGCATTTGTGGTCCTGAACCGAGACTGTCGTTCTGTGCTATGCACTGTTTGATTTCTGGAGGGGAGTaGTTTGCAAACCTGGAGCTA +
Preference number: 5 (lower is better)
Translates to: TSICGPEPRLSFCAMHCLISGGE*FANLEL
Trigger: TAGCTCCAGGTTTGCAAACAACTCCCCTCCAGAAAT...CAAACAGTGCATAGCACAGAACGACAGTCTCGGTTCAGGACCACAAATGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp ATCTTCACTGTTTGCTGCAGACTGCTGTCCTCTACATTAAATGGTGCCCAGGTCCTGGAGGGGAGTTGTTaGCAAACCTGGAGCTATAAA +
Preference number: 5 (lower is better)
Translates to: IFTVCCRLLSSTLNGAQVLEGSC*QTWSYK
Trigger: TTTATAGCTCCAGGTTTGCAAACAACTCCCCTCCAG...GACCTGGGCACCATTTAATGTAGAGGACAGCAGTCTGCAGCAAACAGTGAAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp GCAGCCACGGGTTACTGGATTTCTGAAAGGAAAGATGGGGTTTGTGTGGGAAAGCATGATGTCTGTGGTTaGAGTTTTGTCCAAAAGGTG +
Preference number: 5 (lower is better)
Translates to: AATGYWISERKDGVCVGKHDVCG*SFVQKV
Trigger: CACCTTTTGGACAAAACTCAAACCACAGACATCATG...CTTTCCCACACAAACCCCATCTTTCCTTTCAGAAATCCAGTAACCCGTGGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATACTGGAGGGGAGTTGTTaGCAAACCTGGAGCTATAAA +
Preference number: 5 (lower is better)
Translates to: TQGLGSQVEAGISGRYIILEGSC*QTWSYK
Trigger: TTTATAGCTCCAGGTTTGCAAACAACTCCCCTCCAG...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp ACACAAGGTCTGGGCTCTCAAGTGGAAGCAGGGATATCTGGAAGATACATAATAATTTCTGGAGGGGAGTaGTTTGCAAACCTGGAGCTA +
Preference number: 5 (lower is better)
Translates to: TQGLGSQVEAGISGRYIIISGGE*FANLEL
Trigger: TAGCTCCAGGTTTGCAAACAACTCCCCTCCAGAAAT...TATTATGTATCTTCCAGATATCCCTGCTTCCACTTGAGAGCCCAGACCTTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp TGTGGGAAAGGTGGCTTGAGAAATAATGAGCCAAGACAAAATTCTCTATTAGGGATTTCTGGAGGGGAGTaGTTTGCAAACCTGGAGCTA +
Preference number: 5 (lower is better)
Translates to: CGKGGLRNNEPRQNSLLGISGGE*FANLEL
Trigger: TAGCTCCAGGTTTGCAAACAACTCCCCTCCAGAAAT...CCCTAATAGAGAATTTTGTCTTGGCTCATTATTTCTCAAGCCACCTTTCCCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp TTGCAATTGTTCCCCAAATTTTCAAGCTTCTCCTATTATCAGGCCTGTGGCCAACATGATGTCTGTGGTTaGAGTTTTGTCCAAAAGGTG +
Preference number: 5 (lower is better)
Translates to: LQLFPKFSSFSYYQACGQHDVCG*SFVQKV
Trigger: CACCTTTTGGACAAAACTCAAACCACAGACATCATG...TTGGCCACAGGCCTGATAATAGGAGAAGCTTGAAAATTTGGGGAACAATTGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2
CDS-3UTR CAA 90 bp CTCACACTCTCACCTTTAACTTGCCCTAATCTTTTATTGTTACTCCAAAACCAGCATGATGTCTGTGGTTaGAGTTTTGTCCAAAAGGTG +
Preference number: 5 (lower is better)
Translates to: LTLSPLTCPNLLLLLQNQHDVCG*SFVQKV
Trigger: CACCTTTTGGACAAAACTCAAACCACAGACATCATG...CTGGTTTTGGAGTAACAATAAAAGATTAGGGCAAGTTAAAGGTGAGAGTGTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000226786.2
ENSMUST00000226909.2
ENSMUST00000227167.2