RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R195 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000069296

Ensembl transcript IDs: ENSMUST00000091736.5, ENSMUST00000228711.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGATGCCTTGTTTCACTCCATGTGCACTGCAAGAGGTCCTGGATTaGTCCTTAATCTTCCCTCTGGCCTTTGTTCAGATCACAGTTTGT +
Preference number: 1 (lower is better)
Translates to: RMPCFTPCALQEVLD*SLIFPLAFVQITVC
Trigger: ACAAACTGTGATCTGAACAAAGGCCAGAGGGAAGATTAAGGAGCAATCCAGGACCTCTTGCAGTGCACATGGAGTGAAACAAGGCATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR GCA 90 bp CCCCAGAACATTTTTGTTGCTATTGTTCAAACTGTACATGTAGGATaGCTTGTTTCACTCCATGTGCACTGCAAGAGGTCCTGGATTGCT +
Preference number: 1 (lower is better)
Translates to: PQNIFVAIVQTVHVG*LVSLHVHCKRSWIA
Trigger: AGCAATCCAGGACCTCTTGCAGTGCACATGGAGTGAAACAAGGCATCCTACATGTACAGTTTGAACAATAGCAACAAAAATGTTCTGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR TCA 90 bp AGAGGGGACTTTATATTATTTAAAGTTGTGTGCCATTCCACTACCTaGTGCTGCCTACATTGCTCAACCCCACTTTCTACCAAGAGACCT +
Preference number: 1 (lower is better)
Translates to: RGDFILFKVVCHSTT*CCLHCSTPLSTKRP
Trigger: AGGTCTCTTGGTAGAAAGTGGGGTTGAGCAATGTAGGCAGCATCAGGTAGTGGAATGGCACACAACTTTAAATAATATAAAGTCCCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR GCA 90 bp GTGCTGGAATTAAAGGCATACATCACCACCCCAGAACATTTTTGTTaGTATTGTTCAAACTGTACATGTAGGATGCCTTGTTTCACTCCA +
Preference number: 1 (lower is better)
Translates to: VLELKAYITTPEHFC*YCSNCTCRMPCFTP
Trigger: TGGAGTGAAACAAGGCATCCTACATGTACAGTTTGAACAATAGCAACAAAAATGTTCTGGGGTGGTGATGTATGCCTTTAATTCCAGCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR CCA 90 bp TTGCTCCTTAATCTTCCCTCTGGCCTTTGTTCAGATCACAGTTTGTaGTGTTTAGTGATCCTCTTTAAATTTTCTCACAGCACTTTGTTT +
Preference number: 1 (lower is better)
Translates to: LLLNLPSGLCSDHSL*CLVILFKFSHSTLF
Trigger: AAACAAAGTGCTGTGAGAAAATTTAAAGAGGATCACTAAACACCACAAACTGTGATCTGAACAAAGGCCAGAGGGAAGATTAAGGAGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR GCA 90 bp AGTTGTGTGCCATTCCACTACCTGATGCTGCCTACATTGCTCAACCCCACTTTCTTGTTTCACTCCATGTaGACTGCAAGAGGTCCTGGA +
Preference number: 2 (lower is better)
Translates to: SCVPFHYLMLPTLLNPTFLFHSM*TARGPG
Trigger: TCCAGGACCTCTTGCAGTGCACATGGAGTGAAACAA...GAAAGTGGGGTTGAGCAATGTAGGCAGCATCAGGTAGTGGAATGGCACACAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR GCA 90 bp TGCAGGGCTCAGCCACCTCAGTCAGGAGTTTATAAAGCACATCTGTTTCCTTACACTGTACATGTAGGATaGCTTGTTTCACTCCATGTG +
Preference number: 2 (lower is better)
Translates to: CRAQPPQSGVYKAHLFPYTVHVG*LVSLHV
Trigger: CACATGGAGTGAAACAAGGCATCCTACATGTACAGT...GTAAGGAAACAGATGTGCTTTATAAACTCCTGACTGAGGTGGCTGAGCCCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR TCA 90 bp AAGAAATCAGCATCTACATGGCTTTTCTATACTTTTTGTTGCTCCACCTGTCATGTCTGTCCCAGACTCTaGTACCTTAATGCAGGGCTC +
Preference number: 2 (lower is better)
Translates to: KKSASTWLFYTFCCSTCHVCPRL*YLNAGL
Trigger: GAGCCCTGCATTAAGGTATCAGAGTCTGGGACAGAC...ATGACAGGTGGAGCAACAAAAAGTATAGAAAAGCCATGTAGATGCTGATTTCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR TCA 90 bp TTCCTTACCAACAGAAAGTTCTTACCGGCAAAACAAGCTGTATTTACAGAAGCACCACTGAAATCCACCTaGCTCATGAGTGCTGGAATT +
Preference number: 2 (lower is better)
Translates to: FLTNRKFLPAKQAVFTEAPLKST*LMSAGI
Trigger: AATTCCAGCACTCATGAGTCAGGTGGATTTCAGTGG...TGCTTCTGTAAATACAGCTTGTTTTGCCGGTAAGAACTTTCTGTTGGTAAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR TCA 90 bp TTTCATGTCACACACATTCTAATAGCCTCTTCTCCTTCTCTTAAGACCACTTATGTGGGGCATCTTGCCTaGTTCAATTTCTGGCGCATA +
Preference number: 2 (lower is better)
Translates to: FHVTHILIASSPSLKTTYVGHLA*FNFWRI
Trigger: TATGCGCCAGAAATTGAATCAGGCAAGATGCCCCAC...ATAAGTGGTCTTAAGAGAAGGAGAAGAGGCTATTAGAATGTGTGTGACATGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR CAA 90 bp GGATTGCTCCTTAATCTTCCCTCTGGCCTTTGTTCAGATCACAGTTaGTGGTGTTTAGTGATCCTCTTTAAATTTTCTCACAGCACTTTG +
Preference number: 2 (lower is better)
Translates to: GLLLNLPSGLCSDHS*WCLVILFKFSHSTL
Trigger: CAAAGTGCTGTGAGAAAATTTAAAGAGGATCACTAAACACCACAAACTGTGATCTGAACAAAGGCCAGAGGGAAGATTAAGGAGCAATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR CAA 90 bp AATTTGATGTCTGTGAATACAGAGGGGACTTTATATTATTTAAAGTaGTGTGCCATTCCACTACCTGATGCTGCCTACATTGCTCAACCC +
Preference number: 2 (lower is better)
Translates to: NLMSVNTEGTLYYLK*CAIPLPDAAYIAQP
Trigger: GGGTTGAGCAATGTAGGCAGCATCAGGTAGTGGAATGGCACACAACTTTAAATAATATAAAGTCCCCTCTGTATTCACAGACATCAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR TCA 90 bp TTTCATGTCACACACATTCTAATAGCCTCTTCTCCTTCTCTTAAGACCACTTATAATCCACCTGACTCATaGGTGCTGGAATTAAAGGCA +
Preference number: 2 (lower is better)
Translates to: FHVTHILIASSPSLKTTYNPPDS*VLELKA
Trigger: TGCCTTTAATTCCAGCACTCATGAGTCAGGTGGATT...ATAAGTGGTCTTAAGAGAAGGAGAAGAGGCTATTAGAATGTGTGTGACATGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR TCA 90 bp CTTTTTCAACCAGTTAACCTCATTCACTTTCATGTCACACACATTCTAATAGCCAAATGTCTTAACATTTaGTTCCCAAGCACCCAATAC +
Preference number: 2 (lower is better)
Translates to: LFQPVNLIHFHVTHILIAKCLNI*FPSTQY
Trigger: GTATTGGGTGCTTGGGAATCAAATGTTAAGACATTT...GGCTATTAGAATGTGTGTGACATGAAAGTGAATGAGGTTAACTGGTTGAAAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR CAA 90 bp AGTTGTGTGCCATTCCACTACCTGATGCTGCCTACATTGCTCAACCCCACTTTCGCAAGAGGTCCTGGATaGCTCCTTAATCTTCCCTCT +
Preference number: 3 (lower is better)
Translates to: SCVPFHYLMLPTLLNPTFARGPG*LLNLPS
Trigger: AGAGGGAAGATTAAGGAGCAATCCAGGACCTCTTGC...GAAAGTGGGGTTGAGCAATGTAGGCAGCATCAGGTAGTGGAATGGCACACAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR GCA 72 bp TGTTTCACTCCATGTGCACTGCAAGAGGTCCTGGATTaGTCCTTAATCTTCCCTCTGGCCTTTGTTCAGATC +
Preference number: 3 (lower is better)
Translates to: CFTPCALQEVLD*SLIFPLAFVQI
Trigger: GATCTGAACAAAGGCCAGAGGGAAGATTAAGGAGCAATCCAGGACCTCTTGCAGTGCACATGGAGTGAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR CAA 90 bp TTTCTATACTTTTTGTTGCTCCACCTGTCATTCTGTCCATCCTGTCCACTTTTTCTGCTGTGGGGCATCTaGCCTGATTCAATTTCTGGC +
Preference number: 3 (lower is better)
Translates to: FLYFLLLHLSFCPSCPLFLLWGI*PDSISG
Trigger: GCCAGAAATTGAATCAGGCAAGATGCCCCACAGCAG...AAAAAGTGGACAGGATGGACAGAATGACAGGTGGAGCAACAAAAAGTATAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR TCA 72 bp TCCTTTATACCTTCATCTGCTGTGGGGCATCTTGCCTaGTTCAATTTCTGGCGCATAATTCCTCCTTGCTTT +
Preference number: 3 (lower is better)
Translates to: SFIPSSAVGHLA*FNFWRIIPPCF
Trigger: AAAGCAAGGAGGAATTATGCGCCAGAAATTGAATCAGGCAAGATGCCCCACAGCAGATGAAGGTATAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR CAA 90 bp TGCAGGGCTCAGCCACCTCAGTCAGGAGTTTATAAAGCACATCTGTTTCCTTACCCCAGAACATTTTTGTaGCTATTGTTCAAACTGTAC +
Preference number: 3 (lower is better)
Translates to: CRAQPPQSGVYKAHLFPYPRTFL*LLFKLY
Trigger: GTACAGTTTGAACAATAGCAACAAAAATGTTCTGGG...GTAAGGAAACAGATGTGCTTTATAAACTCCTGACTGAGGTGGCTGAGCCCTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR GCA 72 bp TTTTTCCTTTATACCTTCATCTGCTGTGGGGCATCTTaGCTGATTCAATTTCTGGCGCATAATTCCTCCTTG +
Preference number: 3 (lower is better)
Translates to: FFLYTFICCGAS*LIQFLAHNSSL
Trigger: CAAGGAGGAATTATGCGCCAGAAATTGAATCAGGCAAGATGCCCCACAGCAGATGAAGGTATAAAGGAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR GCA 72 bp ATTTTTGTTGCTATTGTTCAAACTGTACATGTAGGATaGCTTGTTTCACTCCATGTGCACTGCAAGAGGTCC +
Preference number: 3 (lower is better)
Translates to: IFVAIVQTVHVG*LVSLHVHCKRS
Trigger: GGACCTCTTGCAGTGCACATGGAGTGAAACAAGGCATCCTACATGTACAGTTTGAACAATAGCAACAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR GCA 72 bp AAAACTGATATAGAGAGGCCATGGAAGAGTGCTGCTTaGAAGCTTTCTCTTTATGACTTGCTCAGTTTGCTT +
Preference number: 3 (lower is better)
Translates to: KTDIERPWKSAA*KLSLYDLLSLL
Trigger: AAGCAAACTGAGCAAGTCATAAAGAGAAAGCTTGCAAGCAGCACTCTTCCATGGCCTCTCTATATCAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR CAA 90 bp CTTTTTCAACCAGTTAACCTCATTCACTTTCATGTCACACACATTCTAATAGCCTCTTCCCTCTGGCCTTaGTTCAGATCACAGTTTGTG +
Preference number: 3 (lower is better)
Translates to: LFQPVNLIHFHVTHILIASSLWP*FRSQFV
Trigger: CACAAACTGTGATCTGAACAAAGGCCAGAGGGAAGA...GGCTATTAGAATGTGTGTGACATGAAAGTGAATGAGGTTAACTGGTTGAAAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR TCA 72 bp TTTATATTATTTAAAGTTGTGTGCCATTCCACTACCTaGTGCTGCCTACATTGCTCAACCCCACTTTCTACC +
Preference number: 3 (lower is better)
Translates to: FILFKVVCHSTT*CCLHCSTPLST
Trigger: GGTAGAAAGTGGGGTTGAGCAATGTAGGCAGCATCAGGTAGTGGAATGGCACACAACTTTAAATAATATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR CAA 90 bp AAGAAATCAGCATCTACATGGCTTTTCTATACTTTTTGTTGCTCCACCTGTCATTTCCTCCTTGCTTTTTaGCATTTCTTCAGGTCCCAA +
Preference number: 3 (lower is better)
Translates to: KKSASTWLFYTFCCSTCHFLLAF*HFFRSQ
Trigger: TTGGGACCTGAAGAAATGCAAAAAAGCAAGGAGGAA...ATGACAGGTGGAGCAACAAAAAGTATAGAAAAGCCATGTAGATGCTGATTTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR CAA 90 bp AAGAAATCAGCATCTACATGGCTTTTCTATACTTTTTGTTGCTCCACCTGTCATCACCCCAGAACATTTTaGTTGCTATTGTTCAAACTG +
Preference number: 3 (lower is better)
Translates to: KKSASTWLFYTFCCSTCHHPRTF*LLLFKL
Trigger: CAGTTTGAACAATAGCAACAAAAATGTTCTGGGGTG...ATGACAGGTGGAGCAACAAAAAGTATAGAAAAGCCATGTAGATGCTGATTTCTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR-3UTR CAA 90 bp ATAGAAGTAAATATCACCAAGGGAAGTCTAGGCAAGGATCTTAAGGCAAAACTGTTTCTATACTTTTTGTaGCTCCACCTGTCATTCTGT +
Preference number: 3 (lower is better)
Translates to: IEVNITKGSLGKDLKAKLFLYFL*LHLSFC
Trigger: ACAGAATGACAGGTGGAGCAACAAAAAGTATAGAAA...CAGTTTTGCCTTAAGATCCTTGCCTAGACTTCCCTTGGTGATATTTACTTCTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR CCA 90 bp TTCCTTACCAACAGAAAGTTCTTACCGGCAAAACAAGCTGTATTTACAGAAGCAGACAGGTGGTGCAGATaGAGAGGCGACGGGCCACCC +
Preference number: 4 (lower is better)
Translates to: FLTNRKFLPAKQAVFTEADRWCR*RGDGPP
Trigger: GGGTGGCCCGTCGCCTCTCCATCTGCACCACCTGTC...TGCTTCTGTAAATACAGCTTGTTTTGCCGGTAAGAACTTTCTGTTGGTAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR CAA 72 bp AGTTGTGTGCCATTCCACTACCTGATGCTGCCTACATaGCTCAACCCCACTTTCTACCAAGAGACCTTTGTG +
Preference number: 4 (lower is better)
Translates to: SCVPFHYLMLPT*LNPTFYQETFV
Trigger: CACAAAGGTCTCTTGGTAGAAAGTGGGGTTGAGCAATGTAGGCAGCATCAGGTAGTGGAATGGCACACAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
3UTR CAA 72 bp TTGTTTCACTCCATGTGCACTGCAAGAGGTCCTGGATaGCTCCTTAATCTTCCCTCTGGCCTTTGTTCAGAT +
Preference number: 4 (lower is better)
Translates to: LFHSMCTARGPG*LLNLPSGLCSD
Trigger: ATCTGAACAAAGGCCAGAGGGAAGATTAAGGAGCAATCCAGGACCTCTTGCAGTGCACATGGAGTGAAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR TCA 90 bp AGTTGTGTGCCATTCCACTACCTGATGCTGCCTACATTGCTCAACCCCACTTTCTGCCCAGACCATTTTTaGAATGAAGTTTTGTGGCTA +
Preference number: 4 (lower is better)
Translates to: SCVPFHYLMLPTLLNPTFCPDHF*NEVLWL
Trigger: TAGCCACAAAACTTCATTTCAAAAATGGTCTGGGCA...GAAAGTGGGGTTGAGCAATGTAGGCAGCATCAGGTAGTGGAATGGCACACAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR CCA 90 bp TGTTTCACTCCATGTGCACTGCAAGAGGTCCTGGATTGCTCCTTAATCTTCCCTCATTATTTGCAAGCCTaGAGGTGTGAAGGTAAAGGA +
Preference number: 4 (lower is better)
Translates to: CFTPCALQEVLDCSLIFPHYLQA*RCEGKG
Trigger: TCCTTTACCTTCACACCTCCAGGCTTGCAAATAATG...AGGGAAGATTAAGGAGCAATCCAGGACCTCTTGCAGTGCACATGGAGTGAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR GCA 90 bp TTCCTTACCAACAGAAAGTTCTTACCGGCAAAACAAGCTGTATTTACAGAAGCATGGGCTGGCATTATTTaGAAGCCTGGAGGTGTGAAG +
Preference number: 4 (lower is better)
Translates to: FLTNRKFLPAKQAVFTEAWAGII*KPGGVK
Trigger: CTTCACACCTCCAGGCTTGCAAATAATGCCAGCCCA...TGCTTCTGTAAATACAGCTTGTTTTGCCGGTAAGAACTTTCTGTTGGTAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR TCA 90 bp CTTTGTTCAGATCACAGTTTGTGGTGTTTAGTGATCCTCTTTAAATTTTCTCACAACTGCTGCCCACTGTaGTATGATGAAGCAAATTGG +
Preference number: 4 (lower is better)
Translates to: LCSDHSLWCLVILFKFSHNCCPL*YDEANW
Trigger: CCAATTTGCTTCATCATATCACAGTGGGCAGCAGTT...GTGAGAAAATTTAAAGAGGATCACTAAACACCACAAACTGTGATCTGAACAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR GCA 90 bp TTTCATGTCACACACATTCTAATAGCCTCTTCTCCTTCTCTTAAGACCACTTATAGAGAGGGAAGAACTTaGCATATTGTTTGTGGTCTG +
Preference number: 4 (lower is better)
Translates to: FHVTHILIASSPSLKTTYREGRT*HIVCGL
Trigger: CAGACCACAAACAATATGGCAAGTTCTTCCCTCTCT...ATAAGTGGTCTTAAGAGAAGGAGAAGAGGCTATTAGAATGTGTGTGACATGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS GCA 90 bp AATGAGAACACTCCACGTAGCTCGGATTTCTGGGCTGGCATTATTTaGAAGCCTGGAGGTGTGAAGGTAAAGGACACACTTGTGATGTTT +
Preference number: 5 (lower is better)
Translates to: NENTPRSSDFWAGII*KPGGVKVKDTLVMF
Trigger: AAACATCACAAGTGTGTCCTTTACCTTCACACCTCCAGGCTTGCAAATAATGCCAGCCCAGAAATCCGAGCTACGTGGAGTGTTCTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091736.5
ENSMUST00000228711.2
CDS-3UTR CAA 90 bp TTTCATGTCACACACATTCTAATAGCCTCTTCTCCTTCTCTTAAGACCACTTATCTGGGCTGGCATTATTaGCAAGCCTGGAGGTGTGAA +
Preference number: 5 (lower is better)
Translates to: FHVTHILIASSPSLKTTYLGWHY*QAWRCE
Trigger: TTCACACCTCCAGGCTTGCAAATAATGCCAGCCCAG...ATAAGTGGTCTTAAGAGAAGGAGAAGAGGCTATTAGAATGTGTGTGACATGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR CAA 90 bp AAGAAATCAGCATCTACATGGCTTTTCTATACTTTTTGTTGCTCCACCTGTCATAGTTGTTTCCTCAACTaGCCAATGAGTGTGCCAGCA +
Preference number: 5 (lower is better)
Translates to: KKSASTWLFYTFCCSTCHSCFLN*PMSVPA
Trigger: TGCTGGCACACTCATTGGCAAGTTGAGGAAACAACT...ATGACAGGTGGAGCAACAAAAAGTATAGAAAAGCCATGTAGATGCTGATTTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR CAA 90 bp AAGAAATCAGCATCTACATGGCTTTTCTATACTTTTTGTTGCTCCACCTGTCATAACTTGCCATATTGTTaGTGGTCTGAACTTTCTCAA +
Preference number: 5 (lower is better)
Translates to: KKSASTWLFYTFCCSTCHNLPYC*WSELSQ
Trigger: TTGAGAAAGTTCAGACCACAAACAATATGGCAAGTT...ATGACAGGTGGAGCAACAAAAAGTATAGAAAAGCCATGTAGATGCTGATTTCTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS-3UTR CAA 90 bp CTTTTTCAACCAGTTAACCTCATTCACTTTCATGTCACACACATTCTAATAGCCGGTTGTTATAGAAAGTaGTTTCCTCAACTTGCCAAT +
Preference number: 5 (lower is better)
Translates to: LFQPVNLIHFHVTHILIAGCYRK*FPQLAN
Trigger: ATTGGCAAGTTGAGGAAACAACTTTCTATAACAACC...GGCTATTAGAATGTGTGTGACATGAAAGTGAATGAGGTTAACTGGTTGAAAAAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228711.2
CDS GCA 72 bp ACTCCACGTAGCTCGGATTTCTGGGCTGGCATTATTTaGAAGCCTGGAGGTGTGAAGGTAAAGGACACACTT +
Preference number: 6 (lower is better)
Translates to: TPRSSDFWAGII*KPGGVKVKDTL
Trigger: AAGTGTGTCCTTTACCTTCACACCTCCAGGCTTGCAAATAATGCCAGCCCAGAAATCCGAGCTACGTGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000091736.5
ENSMUST00000228711.2
CDS CCA 72 bp GAGGAGGAGAGAGGGAAGAACTTGCCATATTGTTTGTaGTCTGAACTTTCTCAAAAAGGAGGTTCTAGGACT +
Preference number: 6 (lower is better)
Translates to: EEERGKNLPYCL*SELSQKGGSRT
Trigger: AGTCCTAGAACCTCCTTTTTGAGAAAGTTCAGACCACAAACAATATGGCAAGTTCTTCCCTCTCTCCTCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000091736.5
ENSMUST00000228711.2
CDS CCA 72 bp GAGACGGAGGAAAAGCCACTTAACTGTGTACCTAGATaGCAGCATATAGCAATACTCATAATACACACCAGC +
Preference number: 6 (lower is better)
Translates to: ETEEKPLNCVPR*QHIAILIIHTS
Trigger: GCTGGTGTGTATTATGAGTATTGCTATATGCTGCCATCTAGGTACACAGTTAAGTGGCTTTTCCTCCGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091736.5
ENSMUST00000228711.2
CDS CAA 72 bp ACTAGAGGGGTTGTTATAGAAAGTTGTTTCCTCAACTaGCCAATGAGTGTGCCAGCAACTAATCAGATGAAA +
Preference number: 6 (lower is better)
Translates to: TRGVVIESCFLN*PMSVPATNQMK
Trigger: TTTCATCTGATTAGTTGCTGGCACACTCATTGGCAAGTTGAGGAAACAACTTTCTATAACAACCCCTCTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000091736.5
ENSMUST00000228711.2