RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R193 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046932

Ensembl transcript IDs: ENSMUST00000057516.2, ENSMUST00000227457.2, ENSMUST00000227562.2, ENSMUST00000228303.2

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGAACTTTGGTGAACAGCACATAGGGCACCTACAGGAGCCTCCCTaGGGAGCCTGCAGCATAGGGGGCCTGGAGGACAAGGGCCCAGGG +
Preference number: 1 (lower is better)
Translates to: GNFGEQHIGHLQEPP*GACSIGGLEDKGPG
Trigger: CCCTGGGCCCTTGTCCTCCAGGCCCCCTATGCTGCAGGCTCCCCAGGGAGGCTCCTGTAGGTGCCCTATGTGCTGTTCACCAAAGTTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 90 bp GGAGTTCTAAGGCCTGCAAAGTCCTGTCCCTGGACAACACCACACTaGATGGGCTTCAGCGAGCATCTCCATTCTGGGCCTGAGCATGGC +
Preference number: 1 (lower is better)
Translates to: GVLRPAKSCPWTTPH*MGFSEHLHSGPEHG
Trigger: GCCATGCTCAGGCCCAGAATGGAGATGCTCGCTGAAGCCCATGCAGTGTGGTGTTGTCCAGGGACAGGACTTTGCAGGCCTTAGAACTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp GACCCCCACTTCATTCTCAGCTCTTCCGCAGTTCCCAGTGGTACATaGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCC +
Preference number: 1 (lower is better)
Translates to: DPHFILSSSAVPSGT*VSKNPRTRWPQTSS
Trigger: GGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAGAATGAAGTGGGGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp GCCTGTGGACCCCCACTTCATTCTCAGCTCTTCCGCAGTTCCCAGTaGTACATGGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAAC +
Preference number: 1 (lower is better)
Translates to: ACGPPLHSQLFRSSQ*YMGVQEPKNQMAPN
Trigger: GTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAGAATGAAGTGGGGGTCCACAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp TGCGGGACCAGCCAGAGAACTACTCCTCGTACTCCCTTCAGGCTTTaGGCTAGATCCAGCCTGTGGACCCCCACTTCATTCTCAGCTCTT +
Preference number: 1 (lower is better)
Translates to: CGTSQRTTPRTPFRL*ARSSLWTPTSFSAL
Trigger: AAGAGCTGAGAATGAAGTGGGGGTCCACAGGCTGGATCTAGCCCAAAGCCTGAAGGGAGTACGAGGAGTAGTTCTCTGGCTGGTCCCGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp ACTACTCCTCGTACTCCCTTCAGGCTTTGGGCTAGATCCAGCCTGTaGACCCCCACTTCATTCTCAGCTCTTCCGCAGTTCCCAGTGGTA +
Preference number: 1 (lower is better)
Translates to: TTPRTPFRLWARSSL*TPTSFSALPQFPVV
Trigger: TACCACTGGGAACTGCGGAAGAGCTGAGAATGAAGTGGGGGTCCACAGGCTGGATCTAGCCCAAAGCCTGAAGGGAGTACGAGGAGTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp CGTGCCTGGGAGAGCGCTAGCAAGCAAGCTCAAGTCTGCAAGAGATaGAGAAAGCAGAACCTCAAGTTTCCAGATGGCCCATCAGCTTGT +
Preference number: 1 (lower is better)
Translates to: RAWESASKQAQVCKR*RKQNLKFPDGPSAC
Trigger: ACAAGCTGATGGGCCATCTGGAAACTTGAGGTTCTGCTTTCTCCATCTCTTGCAGACTTGAGCTTGCTTGCTAGCGCTCTCCCAGGCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 90 bp ATTTTTCTTGTCCTTCTGGTCTGGAGGCTGTGGAGTTCTAAGGCCTaGAAAGTCCTGTCCCTGGACAACACCACACTGCATGGGCTTCAG +
Preference number: 1 (lower is better)
Translates to: IFLVLLVWRLWSSKA*KVLSLDNTTLHGLQ
Trigger: CTGAAGCCCATGCAGTGTGGTGTTGTCCAGGGACAGGACTTTGCAGGCCTTAGAACTCCACAGCCTCCAGACCAGAAGGACAAGAAAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp CTGCATGACAGGAATGATGGGTGTTGGGGACAGCATACCATGACATaGATGACATCTAGGTCCCTGAGGAGCAGGAGACACATTCCTCCA +
Preference number: 1 (lower is better)
Translates to: LHDRNDGCWGQHTMT*MTSRSLRSRRHIPP
Trigger: TGGAGGAATGTGTCTCCTGCTCCTCAGGGACCTAGATGTCATCCATGTCATGGTATGCTGTCCCCAACACCCATCATTCCTGTCATGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp CAGGAGGTCTTTGGAGTGACAGCCCTTCTCACCAAGTGTGGGACATaGAAGGTATCTTGGTTCCTGGTTGAGGTAAGGCTCAAAATCCCT +
Preference number: 1 (lower is better)
Translates to: QEVFGVTALLTKCGT*KVSWFLVEVRLKIP
Trigger: AGGGATTTTGAGCCTTACCTCAACCAGGAACCAAGATACCTTTCATGTCCCACACTTGGTGAGAAGGGCTGTCACTCCAAAGACCTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 90 bp AACCAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGCATCATATGGGTaGCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAACCTCTGAA +
Preference number: 1 (lower is better)
Translates to: NQKVCVCVCVCASYG*LLHMEARKGVRTSE
Trigger: TTCAGAGGTTCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACACACACACACACACACACACTTTTTGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp CCAGGGAATCCTCCATCAGGAATAAGGAACTGTCTGCAGCAGACCTaGATGGTGACATATCAGAAGTCCACAGGCAGTTTGTTTGTAGAA +
Preference number: 1 (lower is better)
Translates to: PGNPPSGIRNCLQQT*MVTYQKSTGSLFVE
Trigger: TTCTACAAACAAACTGCCTGTGGACTTCTGATATGTCACCATCCAGGTCTGCTGCAGACAGTTCCTTATTCCTGATGGAGGATTCCCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp GTTGGGAAACATGGGAGCATACAGGTCAACATATTTGTGGAGAGGTaGCTCAGAGTTCTACATCTGGATTCTCAGCCTAGAGGAAGTGAT +
Preference number: 1 (lower is better)
Translates to: VGKHGSIQVNIFVER*LRVLHLDSQPRGSD
Trigger: ATCACTTCCTCTAGGCTGAGAATCCAGATGTAGAACTCTGAGCCACCTCTCCACAAATATGTTGACCTGTATGCTCCCATGTTTCCCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp GTCATCATGTTGGGAAACATGGGAGCATACAGGTCAACATATTTGTaGAGAGGTGGCTCAGAGTTCTACATCTGGATTCTCAGCCTAGAG +
Preference number: 1 (lower is better)
Translates to: VIMLGNMGAYRSTYL*RGGSEFYIWILSLE
Trigger: CTCTAGGCTGAGAATCCAGATGTAGAACTCTGAGCCACCTCTCCACAAATATGTTGACCTGTATGCTCCCATGTTTCCCAACATGATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp ACAATTCTAATTTTGGGTGACTGCATGCCCTTCTGCAATTCCCTATaGAGGATGCAGCATGCTAAACTGCATGACAGGAATGATGGGTGT +
Preference number: 1 (lower is better)
Translates to: TILILGDCMPFCNSL*RMQHAKLHDRNDGC
Trigger: ACACCCATCATTCCTGTCATGCAGTTTAGCATGCTGCATCCTTCATAGGGAATTGCAGAAGGGCATGCAGTCACCCAAAATTAGAATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp TCACATTTAATCTGTTCATGCCCACACCCCATGTGGAGAGGTGAGTaGAATGTTGTTGCTTTGCCCTATTTAGTACCTCTCAGATACAGC +
Preference number: 1 (lower is better)
Translates to: SHLICSCPHPMWRGE*NVVALPYLVPLRYS
Trigger: GCTGTATCTGAGAGGTACTAAATAGGGCAAAGCAACAACATTTCACTCACCTCTCCACATGGGGTGTGGGCATGAACAGATTAAATGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp GTGCTCACATTTAATCTGTTCATGCCCACACCCCATGTGGAGAGGTaGGTGAAATGTTGTTGCTTTGCCCTATTTAGTACCTCTCAGATA +
Preference number: 1 (lower is better)
Translates to: VLTFNLFMPTPHVER*VKCCCFALFSTSQI
Trigger: TATCTGAGAGGTACTAAATAGGGCAAAGCAACAACATTTCACTCACCTCTCCACATGGGGTGTGGGCATGAACAGATTAAATGTGAGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp TACAGGTCAACATATTTGTGGAGAGGTGGCTCAGAGTTCTACATCTaGATTCTCAGCCTAGAGGAAGTGATTAGCACATTGGGTGTAGTT +
Preference number: 1 (lower is better)
Translates to: YRSTYLWRGGSEFYI*ILSLEEVISTLGVV
Trigger: AACTACACCCAATGTGCTAATCACTTCCTCTAGGCTGAGAATCCAGATGTAGAACTCTGAGCCACCTCTCCACAAATATGTTGACCTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp AGACTAAAACTCTGGCATGGGAAACAATACAATTCTAATTTTGGGTaGCTGCATGCCCTTCTGCAATTCCCTATGAAGGATGCAGCATGC +
Preference number: 1 (lower is better)
Translates to: RLKLWHGKQYNSNFG*LHALLQFPMKDAAC
Trigger: GCATGCTGCATCCTTCATAGGGAATTGCAGAAGGGCATGCAGTCACCCAAAATTAGAATTGTATTGTTTCCCATGCCAGAGTTTTAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp GTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTaGGAACCTCTGAAATTAGAGTTACAGGAGGTTATTAACCATTAT +
Preference number: 1 (lower is better)
Translates to: VHHMGACCTWRLEKV*EPLKLELQEVINHY
Trigger: ATAATGGTTAATAACCTCCTGTAACTCTAATTTCAGAGGTTCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 90 bp GCTATCCTTCCCACACATATAGATTATAACATTTCCTTCATCTGGTaGTCACATTTAATCTGTTCATGCCCACACCCCATGTGGAGAGGT +
Preference number: 1 (lower is better)
Translates to: AILPTHIDYNISFIW*SHLICSCPHPMWRG
Trigger: ACCTCTCCACATGGGGTGTGGGCATGAACAGATTAAATGTGAGCACCAGATGAAGGAAATGTTATAATCTATATGTGTGGGAAGGATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp GTAGACTCAATTCAGATCTTCAATTTGATGAGGTACCTAAAGGCCTaGAGGGCTTTGCCAATAAGCTTTCCTTCTCAGATATTCCTCCCT +
Preference number: 1 (lower is better)
Translates to: VDSIQIFNLMRYLKA*RALPISFPSQIFLP
Trigger: AGGGAGGAATATCTGAGAAGGAAAGCTTATTGGCAAAGCCCTCCAGGCCTTTAGGTACCTCATCAAATTGAAGATCTGAATTGAGTCTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp CTACTAAAGGTATTTAACGTCACGCCCACCCTGAGAAATCGGGTATaGTTTTACTCATCCACTTTCTGCCATGACAATAAATGCCTTAAA +
Preference number: 1 (lower is better)
Translates to: LLKVFNVTPTLRNRV*FYSSTFCHDNKCLK
Trigger: TTTAAGGCATTTATTGTCATGGCAGAAAGTGGATGAGTAAAACCATACCCGATTTCTCAGGGTGGGCGTGACGTTAAATACCTTTAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp ATTGCTATCCTTCCCACACATATAGATTATAACATTTCCTTCATCTaGTGCTCACATTTAATCTGTTCATGCCCACACCCCATGTGGAGA +
Preference number: 1 (lower is better)
Translates to: IAILPTHIDYNISFI*CSHLICSCPHPMWR
Trigger: TCTCCACATGGGGTGTGGGCATGAACAGATTAAATGTGAGCACCAGATGAAGGAAATGTTATAATCTATATGTGTGGGAAGGATAGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp TGTCTTCTCCACTTTGTAAGAGACCTTCAGATAAAGGATACTTTCTaGCACCCTTCTTCTTCACTTGTTTTCCTGCTCATTGGGTTAGAA +
Preference number: 1 (lower is better)
Translates to: CLLHFVRDLQIKDTF*HPSSSLVFLLIGLE
Trigger: TTCTAACCCAATGAGCAGGAAAACAAGTGAAGAAGAAGGGTGTCAGAAAGTATCCTTTATCTGAAGGTCTCTTACAAAGTGGAGAAGACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp TTTACACACCATGCATATATGTGTATAGAGAGTATCAATGCCACTTaGGGAGCTAATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAA +
Preference number: 1 (lower is better)
Translates to: FTHHAYMCIESINAT*GANGLSRAIVYLAK
Trigger: TTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATTAGCTCCTCAAGTGGCATTGATACTCTCTATACACATATATGCATGGTGTGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 90 bp ATTAATGCTGTGACCACACAGCAACGTCATGAAAGTGTTTGGAATTaGCTTACAGGTTTTAGTTTAATCCGTTGTTTAGATACTGGGACT +
Preference number: 1 (lower is better)
Translates to: INAVTTQQRHESVWN*LTGFSLIRCLDTGT
Trigger: AGTCCCAGTATCTAAACAACGGATTAAACTAAAACCTGTAAGGCAATTCCAAACACTTTCATGACGTTGCTGTGTGGTCACAGCATTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 90 bp TTGCGGATTGCTGAATTAAGGATTAACATGATTCTTTCTAACCACTaGCACTTTTGCCCATGTTGTGTACCAATGGAACTTCAAAGTGAA +
Preference number: 1 (lower is better)
Translates to: LRIAELRINMILSNH*HFCPCCVPMELQSE
Trigger: TTCACTTTGAAGTTCCATTGGTACACAACATGGGCAAAAGTGTCAGTGGTTAGAAAGAATCATGTTAATCCTTAATTCAGCAATCCGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 90 bp TTTCTTATTAATGCTGTGACCACACAGCAACGTCATGAAAGTGTTTaGAATTGCCTTACAGGTTTTAGTTTAATCCGTTGTTTAGATACT +
Preference number: 1 (lower is better)
Translates to: FLINAVTTQQRHESV*NCLTGFSLIRCLDT
Trigger: AGTATCTAAACAACGGATTAAACTAAAACCTGTAAGGCAATTCCAAACACTTTCATGACGTTGCTGTGTGGTCACAGCATTAATAAGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCAGCACCCGAGCAGCAGTaGGAGGACAGAACCCAAGCA +
Preference number: 2 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPAPEQQ*EDRTQA
Trigger: TGCTTGGGTTCTGTCCTCTCACTGCTGCTCGGGTGC...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCAGTGGCTCAGTGTTCCTaGGCAGTTTACACAGCCCTG +
Preference number: 2 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPVAQCS*AVYTAL
Trigger: CAGGGCTGTGTAAACTGCTCAGGAACACTGAGCCAC...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCATGGCCTCAGCTCCCCTaGCAGATCTGTTTGGTACTC +
Preference number: 2 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPWPQLP*QICLVL
Trigger: GAGTACCAAACAGATCTGGCAGGGGAGCTGAGGCCA...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp CCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCTAGTGTGGCCTCAGCTCCCCTaGCAGATCTGTTTGGTACTC +
Preference number: 2 (lower is better)
Translates to: PTLEQCPQVSLWPDTHLVWPQLP*QICLVL
Trigger: GAGTACCAAACAGATCTGGCAGGGGAGCTGAGGCCA...CACTAGGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCGGGAGCCAGCTGTTGTaGCTCAGTGTTCCTGAGCAG +
Preference number: 2 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTGSQLL*LSVPEQ
Trigger: CTGCTCAGGAACACTGAGCCACAACAGCTGGCTCCC...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCGCAAAGTCCTGTCCCTaGACAACACCACACTGCATG +
Preference number: 2 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTAKSCP*TTPHCM
Trigger: CATGCAGTGTGGTGTTGTCCAGGGACAGGACTTTGC...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp CCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCTAGTGCTGGTCTGGAGGCTGTaGAGTTCTAAGGCCTGCAAA +
Preference number: 2 (lower is better)
Translates to: PTLEQCPQVSLWPDTHLVLVWRL*SSKACK
Trigger: TTTGCAGGCCTTAGAACTCCACAGCCTCCAGACCAG...CACTAGGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGGAGCTGCAGCGAGCTaGAGGGGAACTTTGGTGAAC +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCGAAAS*RGTLVN
Trigger: GTTCACCAAAGTTCCCCTTCAGCTCGCTGCAGCTCC...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAGGAGCTGCAGCGAGCTaGAGGGGAACTTTGGTGAAC +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRGAAAS*RGTLVN
Trigger: GTTCACCAAAGTTCCCCTTCAGCTCGCTGCAGCTCC...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGGGAGCTGCAGCGAGCTaGAGGGGAACTTTGGTGAAC +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMGAAAS*RGTLVN
Trigger: GTTCACCAAAGTTCCCCTTCAGCTCGCTGCAGCTCC...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCAAGGAATGATGGGTGTTaGGGACAGCATACCATGACA +
Preference number: 2 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPRNDGC*GQHTMT
Trigger: TGTCATGGTATGCTGTCCCCAACACCCATCATTCCT...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGGGGAGCCAGCTGTTGTaGCTCAGTGTTCCTGAGCAG +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMGSQLL*LSVPEQ
Trigger: CTGCTCAGGAACACTGAGCCACAACAGCTGGCTCCC...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGGCTCAGTGTTCCTaGGCAGTTTACACAGCCCTG +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCVAQCS*AVYTAL
Trigger: CAGGGCTGTGTAAACTGCTCAGGAACACTGAGCCAC...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGGTGGCTCAGTGTTCCTaGGCAGTTTACACAGCCCTG +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMVAQCS*AVYTAL
Trigger: CAGGGCTGTGTAAACTGCTCAGGAACACTGAGCCAC...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCGAGAATTTCAACTCTTaGCCAGGGAGAGGACAAGGG +
Preference number: 2 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTENFNS*PGRGQG
Trigger: CCCTTGTCCTCTCCCTGGTCAAGAGTTGAAATTCTC...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp CCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCTAGTGTGTCTGCAGCAGACCTaGATGGTGACATATCAGAAG +
Preference number: 2 (lower is better)
Translates to: PTLEQCPQVSLWPDTHLVCLQQT*MVTYQK
Trigger: CTTCTGATATGTCACCATCCAGGTCTGCTGCAGACA...CACTAGGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp CCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCTAGTGCAGCATACCATGACATaGATGACATCTAGGTCCCTG +
Preference number: 2 (lower is better)
Translates to: PTLEQCPQVSLWPDTHLVQHTMT*MTSRSL
Trigger: CAGGGACCTAGATGTCATCCATGTCATGGTATGCTG...CACTAGGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp CCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCTAGTGAGGAATGATGGGTGTTaGGGACAGCATACCATGACA +
Preference number: 2 (lower is better)
Translates to: PTLEQCPQVSLWPDTHLVRNDGC*GQHTMT
Trigger: TGTCATGGTATGCTGTCCCCAACACCCATCATTCCT...CACTAGGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCCAGTTTACACAGCCCTaGACTCAGGAACTGTCACTC +
Preference number: 2 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTQFTQP*TQELSL
Trigger: GAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTG...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGATGTTCCCATTTCTCCTaGCCTCAGCCTTGGACTACG +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRCSHFS*PQPWTT
Trigger: CGTAGTCCAAGGCTGAGGTCAGGAGAAATGGGAACA...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTTGTTCCCATTTCTCCTaGCCTCAGCCTTGGACTACG +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCCSHFS*PQPWTT
Trigger: CGTAGTCCAAGGCTGAGGTCAGGAGAAATGGGAACA...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGTGGAGTTCTAAGGCCTaGAAAGTCCTGTCCCTGGAC +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMWSSKA*KVLSLD
Trigger: GTCCAGGGACAGGACTTTGCAGGCCTTAGAACTCCA...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAGCAAAGTCCTGTCCCTaGACAACACCACACTGCATG +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRAKSCP*TTPHCM
Trigger: CATGCAGTGTGGTGTTGTCCAGGGACAGGACTTTGC...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTGGTCTGGAGGCTGTaGAGTTCTAAGGCCTGCAAA +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCLVWRL*SSKACK
Trigger: TTTGCAGGCCTTAGAACTCCACAGCCTCCAGACCAG...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGAGCAGACCTGGATGGTaGCATATCAGAAGTCCACAG +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMSRPGW*HIRSPQ
Trigger: CTGTGGACTTCTGATATGTCACCATCCAGGTCTGCT...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCGCAATCTCTGAACAGTaGCATTTCCCCTGTGTTTTC +
Preference number: 2 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTAISEQ*HFPCVF
Trigger: GAAAACACAGGGGAAATGTCACTGTTCAGAGATTGC...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCGGGGTTCAATCACCTTaGAATGCCAAATGTTCTTTG +
Preference number: 2 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTGVQSP*NAKCSL
Trigger: CAAAGAACATTTGGCATTTCAAGGTGATTGAACCCC...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAGATAGGAATGCTAGGTaGGGCACAGAGCTCTTCTTC +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRDRNAR*GTELFF
Trigger: GAAGAAGAGCTCTGTGCCTCACCTAGCATTCCTATC...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCAAGCAAGCTCAAGTCTaGAAGAGATGGAGAAAGCAG +
Preference number: 2 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTKQAQV*KRWRKQ
Trigger: CTGCTTTCTCCATCTCTTGCAGACTTGAGCTTGCTT...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCAATTGCCCAGGTGCATaGTGTAAAAGCAATTCTGGA +
Preference number: 2 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTNCPGA*CKSNSG
Trigger: TCCAGAATTGCTTTTACAGCATGCACCTGGGCAATT...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCTTGTCCTTCTGGTCTaGAGGCTGTGGAGTTCTAAG +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCLVLLV*RLWSSK
Trigger: CTTAGAACTCCACAGCCTCCAGACCAGAAGGACAAG...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCTTTTTCTTGTCCTTCTaGTCTGGAGGCTGTGGAGTT +
Preference number: 2 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTFFLSF*SGGCGV
Trigger: AACTCCACAGCCTCCAGACCAGAAGGACAAGAAAAA...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCATCCATTACCAGAAAGTaGAGGAATATACTGGAACTA +
Preference number: 2 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPSITRK*RNILEL
Trigger: TAGTTCCAGTATATTCCTTCACTTTCTGGTAATGGA...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGATGTCTGCAGCAGACCTaGATGGTGACATATCAGAAG +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRCLQQT*MVTYQK
Trigger: CTTCTGATATGTCACCATCCAGGTCTGCTGCAGACA...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGACAGCATACCATGACATaGATGACATCTAGGTCCCTG +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRQHTMT*MTSRSL
Trigger: CAGGGACCTAGATGTCATCCATGTCATGGTATGCTG...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCCGTTGTTTAGATACTaGGACTCTGCAAAGCCAAGC +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCPLFRY*DSAKPS
Trigger: GCTTGGCTTTGCAGAGTCCCAGTATCTAAACAACGG...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTCACACAGCAACGTCATaGAAGTGTTTGGAATTGCCT +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCHTATS*KCLELP
Trigger: AGGCAATTCCAAACACTTTCATGACGTTGCTGTGTG...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGCACACAGCAACGTCATaGAAGTGTTTGGAATTGCCT +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMHTATS*KCLELP
Trigger: AGGCAATTCCAAACACTTTCATGACGTTGCTGTGTG...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGCAATCTCTGAACAGTaGCATTTCCCCTGTGTTTTC +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCAISEQ*HFPCVF
Trigger: GAAAACACAGGGGAAATGTCACTGTTCAGAGATTGC...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTGCACCCGAGCAGCAGTaGGAGGACAGAACCCAAGCA +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIAPEQQ*EDRTQA
Trigger: TGCTTGGGTTCTGTCCTCTCACTGCTGCTCGGGTGC...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAATGAGGGTCATTGTGTaGAGTGTGCTAAAGCAGAAG +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRMRVIV*SVLKQK
Trigger: CTTCTGCTTTAGCACACTGCACACAATGACCCTCAT...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTTGCAGCATGCTAAACTaGATGACAGGAATGATGGGT +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCCSMLN*MTGMMG
Trigger: ACCCATCATTCCTGTCATGCAGTTTAGCATGCTGCA...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGGAAAAAGAGGAAGCCTaGAACTTTGGGGAACAATTG +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMEKEEA*NFGEQL
Trigger: CAATTGTTCCCCAAAGTTTCAGGCTTCCTCTTTTTC...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGGGGGTTCAATCACCTTaGAATGCCAAATGTTCTTTG +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMGVQSP*NAKCSL
Trigger: CAAAGAACATTTGGCATTTCAAGGTGATTGAACCCC...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTTCCTTCAGTAACTGTTaGGATGTTTCCACTTCTCAG +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCSFSNC*DVSTSQ
Trigger: CTGAGAAGTGGAAACATCTCAACAGTTACTGAAGGA...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTAATTGCCCAGGTGCATaGTGTAAAAGCAATTCTGGA +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCNCPGA*CKSNSG
Trigger: TCCAGAATTGCTTTTACAGCATGCACCTGGGCAATT...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGAATTGCCCAGGTGCATaGTGTAAAAGCAATTCTGGA +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMNCPGA*CKSNSG
Trigger: TCCAGAATTGCTTTTACAGCATGCACCTGGGCAATT...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGCATGTTGTGTACCAATaGAACTTCAAAGTGAACCGC +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMHVVYQ*NFKVNR
Trigger: GCGGTTCACTTTGAAGTTCCATTGGTACACAACATG...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGACATGTTGTGTACCAATaGAACTTCAAAGTGAACCGC +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRHVVYQ*NFKVNR
Trigger: GCGGTTCACTTTGAAGTTCCATTGGTACACAACATG...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATCAGCATACCATGACATaGATGACATCTAGGTCCCTG +
Preference number: 2 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYQHTMT*MTSRSL
Trigger: CAGGGACCTAGATGTCATCCATGTCATGGTATGCTG...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTGGGAGCCAGCTGTTGTaGCTCAGTGTTCCTGAGCAG +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIGSQLL*LSVPEQ
Trigger: CTGCTCAGGAACACTGAGCCACAACAGCTGGCTCCC...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 90 bp CTACTTGAGAAACCCACAACCAAGACTGTTGAATGCATGCATTCCTaGGGAGAATTTCAACTCTTGACCAGGGAGAGGACAAGGGAGAGA +
Preference number: 2 (lower is better)
Translates to: LLEKPTTKTVECMHS*GEFQLLTRERTRER
Trigger: TCTCTCCCTTGTCCTCTCCCTGGTCAAGAGTTGAAATTCTCCCAAGGAATGCATGCATTCAACAGTCTTGGTTGTGGGTTTCTCAAGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTTGTTTTCCTGCTCATTaGGTTAGAACAGCCAATAGT +
Preference number: 2 (lower is better)
Translates to: ERTRERERERERERERVCCFPAH*VRTANS
Trigger: ACTATTGGCTGTTCTAACCCAATGAGCAGGAAAACA...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTAACCCAAGAACCAGATaGCCCCAAACCAGCTCCAGC +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDINPRTR*PQTSSS
Trigger: GCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTT...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGACTGAGAAATCGGGTATaGTTTTACTCATCCACTTTC +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRLRNRV*FYSSTF
Trigger: GAAAGTGGATGAGTAAAACCATACCCGATTTCTCAG...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp TTGAGGCTTAGGACAGCACAGAACAGTCCTAATTGCCCAGGTGCATGCTGTAAAGAAAAAGAGGAAGCCTaGAACTTTGGGGAACAATTG +
Preference number: 2 (lower is better)
Translates to: LRLRTAQNSPNCPGACCKEKEEA*NFGEQL
Trigger: CAATTGTTCCCCAAAGTTTCAGGCTTCCTCTTTTTC...TTTACAGCATGCACCTGGGCAATTAGGACTGTTCTGTGCTGTCCTAAGCCTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGTCCATTACCAGAAAGTaGAGGAATATACTGGAACTA +
Preference number: 2 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMSITRK*RNILEL
Trigger: TAGTTCCAGTATATTCCTTCACTTTCTGGTAATGGA...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAATAAAGGATACTTTCTaGCACCCTTCTTCTTCACTT +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRIKDTF*HPSSSL
Trigger: AAGTGAAGAAGAAGGGTGTCAGAAAGTATCCTTTAT...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GTCCACAGGCAGTTTGTTTGTAGAAAAGTTGTTCCCATTTCTCCTGACCTCAGCATGAGGGTCATTGTGTaGAGTGTGCTAAAGCAGAAG +
Preference number: 2 (lower is better)
Translates to: VHRQFVCRKVVPISPDLSMRVIV*SVLKQK
Trigger: CTTCTGCTTTAGCACACTGCACACAATGACCCTCAT...GCTGAGGTCAGGAGAAATGGGAACAACTTTTCTACAAACAAACTGCCTGTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTTGGAGTTCTAAGGCCTaGAAAGTCCTGTCCCTGGAC +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIWSSKA*KVLSLD
Trigger: GTCCAGGGACAGGACTTTGCAGGCCTTAGAACTCCA...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTGCTAGATCCAGCCTGTaGACCCCCACTTCATTCTCA +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIARSSL*TPTSFS
Trigger: TGAGAATGAAGTGGGGGTCCACAGGCTGGATCTAGC...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTGAGAATTTCAACTCTTaGCCAGGGAGAGGACAAGGG +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIENFNS*PGRGQG
Trigger: CCCTTGTCCTCTCCCTGGTCAAGAGTTGAAATTCTC...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTCAGTTTACACAGCCCTaGACTCAGGAACTGTCACTC +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIQFTQP*TQELSL
Trigger: GAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTG...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAAACATTTCCTTCATCTaGTGCTCACATTTAATCTGT +
Preference number: 2 (lower is better)
Translates to: VCASYGCLLHMEARKGVRNISFI*CSHLIC
Trigger: ACAGATTAAATGTGAGCACCAGATGAAGGAAATGTT...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATATAAAGGATACTTTCTaGCACCCTTCTTCTTCACTT +
Preference number: 2 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYIKDTF*HPSSSL
Trigger: AAGTGAAGAAGAAGGGTGTCAGAAAGTATCCTTTAT...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GGACTACGGCTATATAGATTTCATTTGTGTGTGACTGCTCTTCAGTTGGACTTGAAGCAAGCTCAAGTCTaGAAGAGATGGAGAAAGCAG +
Preference number: 2 (lower is better)
Translates to: GLRLYRFHLCVTALQLDLKQAQV*KRWRKQ
Trigger: CTGCTTTCTCCATCTCTTGCAGACTTGAGCTTGCTT...CAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTCCGTTGTTTAGATACTaGGACTCTGCAAAGCCAAGC +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIPLFRY*DSAKPS
Trigger: GCTTGGCTTTGCAGAGTCCCAGTATCTAAACAACGG...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 90 bp ATTCAGATCTTCAATTTGATGAGGTACCTAAAGGCCTGGAGGGCTTaGCCAATAAGCTTTCCTTCTCAGATATTCCTCCCTACTAAAGGT +
Preference number: 2 (lower is better)
Translates to: IQIFNLMRYLKAWRA*PISFPSQIFLPTKG
Trigger: ACCTTTAGTAGGGAGGAATATCTGAGAAGGAAAGCTTATTGGCAAAGCCCTCCAGGCCTTTAGGTACCTCATCAAATTGAAGATCTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR TCA 90 bp GGACTACGGCTATATAGATTTCATTTGTGTGTGACTGCTCTTCAGTTGGACTTGGAAAAAGAGGAAGCCTaGAACTTTGGGGAACAATTG +
Preference number: 2 (lower is better)
Translates to: GLRLYRFHLCVTALQLDLEKEEA*NFGEQL
Trigger: CAATTGTTCCCCAAAGTTTCAGGCTTCCTCTTTTTC...CAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTAAGCAAGCTCAAGTCTaGAAGAGATGGAGAAAGCAG +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIKQAQV*KRWRKQ
Trigger: CTGCTTTCTCCATCTCTTGCAGACTTGAGCTTGCTT...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp GGACTACGGCTATATAGATTTCATTTGTGTGTGACTGCTCTTCAGTTGGACTTGCATGTTGTGTACCAATaGAACTTCAAAGTGAACCGC +
Preference number: 2 (lower is better)
Translates to: GLRLYRFHLCVTALQLDLHVVYQ*NFKVNR
Trigger: GCGGTTCACTTTGAAGTTCCATTGGTACACAACATG...CAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTTTTTTCTTGTCCTTCTaGTCTGGAGGCTGTGGAGTT +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIFFLSF*SGGCGV
Trigger: AACTCCACAGCCTCCAGACCAGAAGGACAAGAAAAA...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
42% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp GGACTACGGCTATATAGATTTCATTTGTGTGTGACTGCTCTTCAGTTGGACTTGTTCTATTTCTCCTTCTaGTCTGGTGAATTCTGTGAA +
Preference number: 2 (lower is better)
Translates to: GLRLYRFHLCVTALQLDLFYFSF*SGEFCE
Trigger: TTCACAGAATTCACCAGAGCAGAAGGAGAAATAGAA...CAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR GCA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTTTCTATTTCTCCTTCTaGTCTGGTGAATTCTGTGAA +
Preference number: 2 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIFYFSF*SGEFCE
Trigger: TTCACAGAATTCACCAGAGCAGAAGGAGAAATAGAA...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp GGTGAACAGCACATAGGGCACCTACAGGAGCCTCCCTaGGGAGCCTGCAGCATAGGGGGCCTGGAGGACAAG +
Preference number: 3 (lower is better)
Translates to: GEQHIGHLQEPP*GACSIGGLEDK
Trigger: CTTGTCCTCCAGGCCCCCTATGCTGCAGGCTCCCCAGGGAGGCTCCTGTAGGTGCCCTATGTGCTGTTCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp GAGCATGGCAGTCCTTCCATCAGCAGCCGAACCCCATaGACCCGAGCAGCAGTGAGAGGACAGAACCCAAGC +
Preference number: 3 (lower is better)
Translates to: EHGSPSISSRTP*TRAAVRGQNPS
Trigger: GCTTGGGTTCTGTCCTCTCACTGCTGCTCGGGTGCATGGGGTTCGGCTGCTGATGGAAGGACTGCCATGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp AGGCCTGCAAAGTCCTGTCCCTGGACAACACCACACTaGATGGGCTTCAGCGAGCATCTCCATTCTGGGCCT +
Preference number: 3 (lower is better)
Translates to: RPAKSCPWTTPH*MGFSEHLHSGP
Trigger: AGGCCCAGAATGGAGATGCTCGCTGAAGCCCATGCAGTGTGGTGTTGTCCAGGGACAGGACTTTGCAGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CTGCAAAGTCCTGTCCCTGGACAACACCACACTGCATaGGCTTCAGCGAGCATCTCCATTCTGGGCCTGAGC +
Preference number: 3 (lower is better)
Translates to: LQSPVPGQHHTA*ASASISILGLS
Trigger: GCTCAGGCCCAGAATGGAGATGCTCGCTGAAGCCCATGCAGTGTGGTGTTGTCCAGGGACAGGACTTTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp GGCTGTGGAGTTCTAAGGCCTGCAAAGTCCTGTCCCTaGACAACACCACACTGCATGGGCTTCAGCGAGCAT +
Preference number: 3 (lower is better)
Translates to: GCGVLRPAKSCP*TTPHCMGFSEH
Trigger: ATGCTCGCTGAAGCCCATGCAGTGTGGTGTTGTCCAGGGACAGGACTTTGCAGGCCTTAGAACTCCACAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CGTACTCCCTTCAGGCTTTGGGCTAGATCCAGCCTGTaGACCCCCACTTCATTCTCAGCTCTTCCGCAGTTC +
Preference number: 3 (lower is better)
Translates to: RTPFRLWARSSL*TPTSFSALPQF
Trigger: GAACTGCGGAAGAGCTGAGAATGAAGTGGGGGTCCACAGGCTGGATCTAGCCCAAAGCCTGAAGGGAGTACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp CCTCTCTGTGCTCTCAGCCATACCCAAGATCAAGCCTaGCACACACCAAAACAAGGACTCCCCCTACTGCGG +
Preference number: 3 (lower is better)
Translates to: PLCALSHTQDQA*HTPKQGLPLLR
Trigger: CCGCAGTAGGGGGAGTCCTTGTTTTGGTGTGTGTCAGGCTTGATCTTGGGTATGGCTGAGAGCACAGAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp AAGCTTGGTCGAGTTCTGGTATCCTGTCTCCCCAAGTaGCTGAGTCTTGTGGTAGAGCGGATGCAGGACTGC +
Preference number: 3 (lower is better)
Translates to: KLGRVLVSCLPK*LSLVVERMQDC
Trigger: GCAGTCCTGCATCCGCTCTACCACAAGACTCAGCCACTTGGGGAGACAGGATACCAGAACTCGACCAAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CAGCTGTCCCACACCTCAGACTCTGCTTTCCCACCTTaGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACA +
Preference number: 3 (lower is better)
Translates to: QLSHTSDSAFPP*SSVLKFPYGLT
Trigger: TGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGCAGAGTCTGAGGTGTGGGACAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp AGCCAGAGAACTACTCCTCGTACTCCCTTCAGGCTTTaGGCTAGATCCAGCCTGTGGACCCCCACTTCATTC +
Preference number: 3 (lower is better)
Translates to: SQRTTPRTPFRL*ARSSLWTPTSF
Trigger: GAATGAAGTGGGGGTCCACAGGCTGGATCTAGCCCAAAGCCTGAAGGGAGTACGAGGAGTAGTTCTCTGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp CCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCTAGTGCTCCTGACCTCAGCCTaGGACTACGGCTATATAGAT +
Preference number: 3 (lower is better)
Translates to: PTLEQCPQVSLWPDTHLVLLTSA*DYGYID
Trigger: ATCTATATAGCCGTAGTCCAAGGCTGAGGTCAGGAG...CACTAGGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp TTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATaGCCTGACACCCACCTAGTGACGGGTAAGCTTGGT +
Preference number: 3 (lower is better)
Translates to: FPTLEQCPQVSL*PDTHLVTGKLG
Trigger: ACCAAGCTTACCCGTCACTAGGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CCCCCACTTCATTCTCAGCTCTTCCGCAGTTCCCAGTaGTACATGGGTGTCCAAGAACCCAAGAACCAGATG +
Preference number: 3 (lower is better)
Translates to: PPLHSQLFRSSQ*YMGVQEPKNQM
Trigger: CATCTGGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAGAATGAAGTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CTACTAGATAGCCTGGCTGAACCCTCAGGAGGTCTTTaGAGTGACAGCCCTTCTCACCAAGTGTGGGACATG +
Preference number: 3 (lower is better)
Translates to: LLDSLAEPSGGL*SDSPSHQVWDM
Trigger: CATGTCCCACACTTGGTGAGAAGGGCTGTCACTCCAAAGACCTCCTGAGGGTTCAGCCAGGCTATCTAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCAACCCTTCTTCTTCACTaGTTTTCCTGCTCATTGGGT +
Preference number: 3 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPTLLLH*FSCSLG
Trigger: ACCCAATGAGCAGGAAAACAAGTGAAGAAGAAGGGT...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp TATAAGTGGGAGCCAGCTGTTGTGGCTCAGTGTTCCTaGGCAGTTTACACAGCCCTGGACTCAGGAACTGTC +
Preference number: 3 (lower is better)
Translates to: YKWEPAVVAQCS*AVYTALDSGTV
Trigger: GACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGAGCCACAACAGCTGGCTCCCACTTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp AGGAATGATGGGTGTTGGGGACAGCATACCATGACATaGATGACATCTAGGTCCCTGAGGAGCAGGAGACAC +
Preference number: 3 (lower is better)
Translates to: RNDGCWGQHTMT*MTSRSLRSRRH
Trigger: GTGTCTCCTGCTCCTCAGGGACCTAGATGTCATCCATGTCATGGTATGCTGTCCCCAACACCCATCATTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp TTCATTCTCAGCTCTTCCGCAGTTCCCAGTGGTACATaGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAA +
Preference number: 3 (lower is better)
Translates to: FILSSSAVPSGT*VSKNPRTRWPQ
Trigger: TTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAGAATGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGCTCCTGACCTCAGCCTaGGACTACGGCTATATAGAT +
Preference number: 3 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMLLTSA*DYGYID
Trigger: ATCTATATAGCCGTAGTCCAAGGCTGAGGTCAGGAG...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCAAAGTCCACAGGCAGTTaGTTTGTAGAAAAGTTGTTC +
Preference number: 3 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPKSTGS*FVEKLF
Trigger: GAACAACTTTTCTACAAACAAACTGCCTGTGGACTT...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTGCATCATATGGGTaGCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGA +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCASYG*LLHMEARKGVR
Trigger: TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACACACACACACACACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCGTGACTGCTCTTCAGTaGGACTTGGTGTATATAATT +
Preference number: 3 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTVTALQ*DLVYII
Trigger: AATTATATACACCAAGTCCAACTGAAGAGCAGTCAC...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp TTTGGAGTGACAGCCCTTCTCACCAAGTGTGGGACATaGAAGGTATCTTGGTTCCTGGTTGAGGTAAGGCTC +
Preference number: 3 (lower is better)
Translates to: FGVTALLTKCGT*KVSWFLVEVRL
Trigger: GAGCCTTACCTCAACCAGGAACCAAGATACCTTTCATGTCCCACACTTGGTGAGAAGGGCTGTCACTCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp GGCACAGAGCTCTTCTTCTTGTCCACTATCCACTCATaGGAACTACTAGATAGCCTGGCTGAACCCTCAGGA +
Preference number: 3 (lower is better)
Translates to: GTELFFLSTIHS*ELLDSLAEPSG
Trigger: TCCTGAGGGTTCAGCCAGGCTATCTAGTAGTTCTCATGAGTGGATAGTGGACAAGAAGAAGAGCTCTGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CCTCCATCAGGAATAAGGAACTGTCTGCAGCAGACCTaGATGGTGACATATCAGAAGTCCACAGGCAGTTTG +
Preference number: 3 (lower is better)
Translates to: PPSGIRNCLQQT*MVTYQKSTGSL
Trigger: CAAACTGCCTGTGGACTTCTGATATGTCACCATCCAGGTCTGCTGCAGACAGTTCCTTATTCCTGATGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCAAGTCCACAGGCAGTTaGTTTGTAGAAAAGTTGTTC +
Preference number: 3 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTKSTGS*FVEKLF
Trigger: GAACAACTTTTCTACAAACAAACTGCCTGTGGACTT...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CAGCATGCTAAACTGCATGACAGGAATGATGGGTGTTaGGGACAGCATACCATGACATGGATGACATCTAGG +
Preference number: 3 (lower is better)
Translates to: QHAKLHDRNDGC*GQHTMTWMTSR
Trigger: CCTAGATGTCATCCATGTCATGGTATGCTGTCCCCAACACCCATCATTCCTGTCATGCAGTTTAGCATGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp TTTTTGATTTTTCTTGTCCTTCTGGTCTGGAGGCTGTaGAGTTCTAAGGCCTGCAAAGTCCTGTCCCTGGAC +
Preference number: 3 (lower is better)
Translates to: FLIFLVLLVWRL*SSKACKVLSLD
Trigger: GTCCAGGGACAGGACTTTGCAGGCCTTAGAACTCCACAGCCTCCAGACCAGAAGGACAAGAAAAATCAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCGATCTGGTCATTCTTTaGAATTTGACACATCTGGTA +
Preference number: 3 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTDLVIL*NLTHLV
Trigger: TACCAGATGTGTCAAATTCAAAAGAATGACCAGATC...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCGCTCTTCAGTTGGACTaGGTGTATATAATTATTCAG +
Preference number: 3 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTALQLD*VYIIIQ
Trigger: CTGAATAATTATATACACCAAGTCCAACTGAAGAGC...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGACTGCTCTTCAGTaGGACTTGGTGTATATAATT +
Preference number: 3 (lower is better)
Translates to: ERTRERERERERERERVCVTALQ*DLVYII
Trigger: AATTATATACACCAAGTCCAACTGAAGAGCAGTCAC...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATACCCTTCTTCTTCACTaGTTTTCCTGCTCATTGGGT +
Preference number: 3 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYTLLLH*FSCSLG
Trigger: ACCCAATGAGCAGGAAAACAAGTGAAGAAGAAGGGT...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGATTAGCTTCTTGTCCTaGTCTTCTCCACTTTGTAAG +
Preference number: 3 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMISFLS*SSPLCK
Trigger: CTTACAAAGTGGAGAAGACAAGGACAAGAAGCTAAT...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTATTAGCTTCTTGTCCTaGTCTTCTCCACTTTGTAAG +
Preference number: 3 (lower is better)
Translates to: ERTRERERERERERERVCISFLS*SSPLCK
Trigger: CTTACAAAGTGGAGAAGACAAGGACAAGAAGCTAAT...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp CCCAAGCATGGCTGGCATTCAGGGGTTCAATCACCTTaGAATGCCAAATGTTCTTTGTATACCCTAACGGGT +
Preference number: 3 (lower is better)
Translates to: PKHGWHSGVQSP*NAKCSLYTLTG
Trigger: ACCCGTTAGGGTATACAAAGAACATTTGGCATTTCAAGGTGATTGAACCCCTGAATGCCAGCCATGCTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAGATCTGGTCATTCTTTaGAATTTGACACATCTGGTA +
Preference number: 3 (lower is better)
Translates to: VCASYGCLLHMEARKGVRDLVIL*NLTHLV
Trigger: TACCAGATGTGTCAAATTCAAAAGAATGACCAGATC...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GCCTCAGCTCCCCTGCCAGATCTGTTTGGTACTCCTTCAGTAACTGTTGAGATGCTATATAGATTTCATTaGTGTGTGACTGCTCTTCAG +
Preference number: 3 (lower is better)
Translates to: ASAPLPDLFGTPSVTVEMLYRFH*CVTALQ
Trigger: CTGAAGAGCAGTCACACACAAATGAAATCTATATAG...CATCTCAACAGTTACTGAAGGAGTACCAAACAGATCTGGCAGGGGAGCTGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGAAGACAGGAAAGATTaGTGGGTCTTTATAAGACTA +
Preference number: 3 (lower is better)
Translates to: ERTRERERERERERERVCEDRKD*WVFIRL
Trigger: TAGTCTTATAAAGACCCACAAATCTTTCCTGTCTTC...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp ATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTaGGAACCTCTGAAATTAGAGTTACAGGAGGTTATT +
Preference number: 3 (lower is better)
Translates to: MGACCTWRLEKV*EPLKLELQEVI
Trigger: AATAACCTCCTGTAACTCTAATTTCAGAGGTTCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp AGCCTAGAGGAAGTGATTAGCACATTGGGTGTAGTTTaGGCATCTGAAACTTCAAACCTGCCTCCATTGACC +
Preference number: 3 (lower is better)
Translates to: SLEEVISTLGVV*ASETSNLPPLT
Trigger: GGTCAATGGAGGCAGGTTTGAAGTTTCAGATGCTCAAACTACACCCAATGTGCTAATCACTTCCTCTAGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp AAGTGGCTGAGTCTTGTGGTAGAGCGGATGCAGGACTaGATAACCTTACAACTGGCACCAACATTTTCTTTA +
Preference number: 3 (lower is better)
Translates to: KWLSLVVERMQD*ITLQLAPTFSL
Trigger: TAAAGAAAATGTTGGTGCCAGTTGTAAGGTTATGCAGTCCTGCATCCGCTCTACCACAAGACTCAGCCACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CTAACCACTGACACTTTTGCCCATGTTGTGTACCAATaGAACTTCAAAGTGAACCGCAGTCATTGTCCTTGG +
Preference number: 3 (lower is better)
Translates to: LTTDTFAHVVYQ*NFKVNRSHCPW
Trigger: CCAAGGACAATGACTGCGGTTCACTTTGAAGTTCCATTGGTACACAACATGGGCAAAAGTGTCAGTGGTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp TTGGGAAACATGGGAGCATACAGGTCAACATATTTGTaGAGAGGTGGCTCAGAGTTCTACATCTGGATTCTC +
Preference number: 3 (lower is better)
Translates to: LGNMGAYRSTYL*RGGSEFYIWIL
Trigger: GAGAATCCAGATGTAGAACTCTGAGCCACCTCTCCACAAATATGTTGACCTGTATGCTCCCATGTTTCCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp ACATATTTGTGGAGAGGTGGCTCAGAGTTCTACATCTaGATTCTCAGCCTAGAGGAAGTGATTAGCACATTG +
Preference number: 3 (lower is better)
Translates to: TYLWRGGSEFYI*ILSLEEVISTL
Trigger: CAATGTGCTAATCACTTCCTCTAGGCTGAGAATCCAGATGTAGAACTCTGAGCCACCTCTCCACAAATATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATGATCTGGTCATTCTTTaGAATTTGACACATCTGGTA +
Preference number: 3 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYDLVIL*NLTHLV
Trigger: TACCAGATGTGTCAAATTCAAAAGAATGACCAGATC...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp TTGAGGCTTAGGACAGCACAGAACAGTCCTAATTGCCCAGGTGCATGCTGTAAAGAGGAGTTCTCTTTTTaGAGAGCAATTGTAGTTTCA +
Preference number: 3 (lower is better)
Translates to: LRLRTAQNSPNCPGACCKEEFSF*RAIVVS
Trigger: TGAAACTACAATTGCTCTCAAAAAAGAGAACTCCTC...TTTACAGCATGCACCTGGGCAATTAGGACTGTTCTGTGCTGTCCTAAGCCTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATCTATATAGATTTCATTaGTGTGTGACTGCTCTTCAG +
Preference number: 3 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYLYRFH*CVTALQ
Trigger: CTGAAGAGCAGTCACACACAAATGAAATCTATATAG...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp GTATTTAACGTCACGCCCACCCTGAGAAATCGGGTATaGTTTTACTCATCCACTTTCTGCCATGACAATAAA +
Preference number: 3 (lower is better)
Translates to: VFNVTPTLRNRV*FYSSTFCHDNK
Trigger: TTTATTGTCATGGCAGAAAGTGGATGAGTAAAACCATACCCGATTTCTCAGGGTGGGCGTGACGTTAAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp CCCACACATATAGATTATAACATTTCCTTCATCTGGTaGTCACATTTAATCTGTTCATGCCCACACCCCATG +
Preference number: 3 (lower is better)
Translates to: PTHIDYNISFIW*SHLICSCPHPM
Trigger: CATGGGGTGTGGGCATGAACAGATTAAATGTGAGCACCAGATGAAGGAAATGTTATAATCTATATGTGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp ATTCAGATCTTCAATTTGATGAGGTACCTAAAGGCCTaGAGGGCTTTGCCAATAAGCTTTCCTTCTCAGATA +
Preference number: 3 (lower is better)
Translates to: IQIFNLMRYLKA*RALPISFPSQI
Trigger: TATCTGAGAAGGAAAGCTTATTGGCAAAGCCCTCCAGGCCTTTAGGTACCTCATCAAATTGAAGATCTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTAAGTCCACAGGCAGTTaGTTTGTAGAAAAGTTGTTC +
Preference number: 3 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIKSTGS*FVEKLF
Trigger: GAACAACTTTTCTACAAACAAACTGCCTGTGGACTT...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp CATGCATATATGTGTATAGAGAGTATCAATGCCACTTaGGGAGCTAATGGCCTCTCAAGAGCTATAGTCTAT +
Preference number: 3 (lower is better)
Translates to: HAYMCIESINAT*GANGLSRAIVY
Trigger: ATAGACTATAGCTCTTGAGAGGCCATTAGCTCCTCAAGTGGCATTGATACTCTCTATACACATATATGCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp CTGAGAAATCGGGTATGGTTTTACTCATCCACTTTCTaGCATGACAATAAATGCCTTAAAACCATGGACTGT +
Preference number: 3 (lower is better)
Translates to: LRNRVWFYSSTF*HDNKCLKTMDC
Trigger: ACAGTCCATGGTTTTAAGGCATTTATTGTCATGGCAGAAAGTGGATGAGTAAAACCATACCCGATTTCTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp CTGACACCCTTCTTCTTCACTTGTTTTCCTGCTCATTaGGTTAGAACAGCCAATAGTAAGTGCTTTGTAAAT +
Preference number: 3 (lower is better)
Translates to: LTPFFFTCFPAH*VRTANSKCFVN
Trigger: ATTTACAAAGCACTTACTATTGGCTGTTCTAACCCAATGAGCAGGAAAACAAGTGAAGAAGAAGGGTGTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CCA 72 bp AATGCTGTGACCACACAGCAACGTCATGAAAGTGTTTaGAATTGCCTTACAGGTTTTAGTTTAATCCGTTGT +
Preference number: 3 (lower is better)
Translates to: NAVTTQQRHESV*NCLTGFSLIRC
Trigger: ACAACGGATTAAACTAAAACCTGTAAGGCAATTCCAAACACTTTCATGACGTTGCTGTGTGGTCACAGCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTGAGGAGTTCTCTTTTTaGAGAGCAATTGTAGTTTCA +
Preference number: 3 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIEEFSF*RAIVVS
Trigger: TGAAACTACAATTGCTCTCAAAAAAGAGAACTCCTC...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR-3UTR CAA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTGAAGACAGGAAAGATTaGTGGGTCTTTATAAGACTA +
Preference number: 3 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIEDRKD*WVFIRL
Trigger: TAGTCTTATAAAGACCCACAAATCTTTCCTGTCTTC...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp GTGACCACACAGCAACGTCATGAAAGTGTTTGGAATTaGCTTACAGGTTTTAGTTTAATCCGTTGTTTAGAT +
Preference number: 3 (lower is better)
Translates to: VTTQQRHESVWN*LTGFSLIRCLD
Trigger: ATCTAAACAACGGATTAAACTAAAACCTGTAAGGCAATTCCAAACACTTTCATGACGTTGCTGTGTGGTCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp CCTGAACCAGTCTTCAATTATCTAGGACAGGCTGTCTaGAAACAACAACAACAACAACAAACCAAACAAAAA +
Preference number: 3 (lower is better)
Translates to: PEPVFNYLGQAV*KQQQQQQTKQK
Trigger: TTTTTGTTTGGTTTGTTGTTGTTGTTGTTGTTTTCAGACAGCCTGTCCTAGATAATTGAAGACTGGTTCAGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp CTTCAAAGTGAACCGCAGTCATTGTCCTTGGAGCTTTaGGTTCTGAAGTATAATAAGTTTAGTGTTAGAGTT +
Preference number: 3 (lower is better)
Translates to: LQSEPQSLSLEL*VLKYNKFSVRV
Trigger: AACTCTAACACTAAACTTATTATACTTCAGAACTCAAAGCTCCAAGGACAATGACTGCGGTTCACTTTGAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR TCA 72 bp GCTGAATTAAGGATTAACATGATTCTTTCTAACCACTaGCACTTTTGCCCATGTTGTGTACCAATGGAACTT +
Preference number: 3 (lower is better)
Translates to: AELRINMILSNH*HFCPCCVPMEL
Trigger: AAGTTCCATTGGTACACAACATGGGCAAAAGTGTCAGTGGTTAGAAAGAATCATGTTAATCCTTAATTCAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR GCA 72 bp AAGAGACTTCAAAAATATCATAGGCTATTACTGTTGTaGTTAGTTGCCTTCCATACCTTGAAAGTAAAGTTC +
Preference number: 3 (lower is better)
Translates to: KRLQKYHRLLLL*LVAFHTLKVKF
Trigger: GAACTTTACTTTCAAGGTATGGAAGGCAACTAAGCACAACAGTAATAGCCTATGATATTTTTGAAGTCTCTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 72 bp CCAGCTGTCCCACACCTCAGACTCTGCTTTCCCACCTaGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGAC +
Preference number: 4 (lower is better)
Translates to: PAVPHLRLCFPT*EQCPQVSLWPD
Trigger: GTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGCAGAGTCTGAGGTGTGGGACAGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCCGTCACGAAGAGCCATaGAAGAAAGGAACAGCCACT +
Preference number: 4 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTRHEEP*KKGTAT
Trigger: AGTGGCTGTTCCTTTCTTTCATGGCTCTTCGTGACG...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp GGGTGTCCAAGAACCCAAGAACCAGATGGCCCCAAACCAGCTCCAGCTGTCCCAATGCCATGTGGTCTGTaGTTTGAGCTTTCTCCACAG +
Preference number: 4 (lower is better)
Translates to: GCPRTQEPDGPKPAPAVPMPCGL*FELSPQ
Trigger: CTGTGGAGAAAGCTCAAACCACAGACCACATGGCAT...TGGGACAGCTGGAGCTGGTTTGGGGCCATCTGGTTCTTGGGTTCTTGGACACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCAACTGTGTGCCTGGATaGCAGCATATAGCAATACCC +
Preference number: 4 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTNCVPG*QHIAIP
Trigger: GGGTATTGCTATATGCTGCCATCCAGGCACACAGTT...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCTCCAAGTCCAACAAGTaGAAGGAAAATTGTCCCCTC +
Preference number: 4 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTSKSNK*KENCPL
Trigger: GAGGGGACAATTTTCCTTTCACTTGTTGGACTTGGA...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCAAATTGTCCCCTCGATaGGGTCACTCCAAATCATCT +
Preference number: 4 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTKLSPR*GHSKSS
Trigger: AGATGATTTGGAGTGACCTCATCGAGGGGACAATTT...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTATGTGGTCTGTGGTTTaGGCTTTCTCCACAGTGTGG +
Preference number: 4 (lower is better)
Translates to: ERTRERERERERERERVCMWSVV*AFSTVW
Trigger: CCACACTGTGGAGAAAGCTCAAACCACAGACCACAT...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR GCA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCAGAAAGACAAGAACATaGCATGTGGTCTGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTRKTRT*HVVCGL
Trigger: CAAACCACAGACCACATGGCATGTTCTTGTCTTTCT...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp CTCAGCTCTTCCGCAGTTCCCAGTGGTACATGGGTGTCCAAGAACCCAAGAACCATATCCAAAAGAGGATaGGAAAGACAAGAACATGCC +
Preference number: 4 (lower is better)
Translates to: LSSSAVPSGTWVSKNPRTISKRG*ERQEHA
Trigger: GGCATGTTCTTGTCTTTCTCATCCTCTTTTGGATAT...GGTTCTTGGGTTCTTGGACACCCATGTACCACTGGGAACTGCGGAAGAGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATCAGCCCATGAGACCCTaGAAAATGACGTCACGAAGA +
Preference number: 4 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYQPMRP*KMTSRR
Trigger: TCTTCGTGACGTCATTTTCCAGGGTCTCATGGGCTG...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGATGTAGCTCTGATTTCTaGCCTGGAATTGTTTGCAGA +
Preference number: 4 (lower is better)
Translates to: VCASYGCLLHMEARKGVRCSSDF*PGIVCR
Trigger: TCTGCAAACAATTCCAGGCCAGAAATCAGAGCTACA...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp TTGAGGCTTAGGACAGCACAGAACAGTCCTAATTGCCCAGGTGCATGCTGTAAAAAATTGTCCCCTCGATaGGGTCACTCCAAATCATCT +
Preference number: 4 (lower is better)
Translates to: LRLRTAQNSPNCPGACCKKLSPR*GHSKSS
Trigger: AGATGATTTGGAGTGACCTCATCGAGGGGACAATTT...TTTACAGCATGCACCTGGGCAATTAGGACTGTTCTGTGCTGTCCTAAGCCTCAA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTATATCCAAAAGAGGATaGGAAAGACAAGAACATGCC +
Preference number: 4 (lower is better)
Translates to: ERTRERERERERERERVCISKRG*ERQEHA
Trigger: GGCATGTTCTTGTCTTTCTCATCCTCTTTTGGATAT...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp GTCCACAGGCAGTTTGTTTGTAGAAAAGTTGTTCCCATTTCTCCTGACCTCAGCAACTGTGTGCCTGGATaGCAGCATATAGCAATACCC +
Preference number: 4 (lower is better)
Translates to: VHRQFVCRKVVPISPDLSNCVPG*QHIAIP
Trigger: GGGTATTGCTATATGCTGCCATCCAGGCACACAGTT...GCTGAGGTCAGGAGAAATGGGAACAACTTTTCTACAAACAAACTGCCTGTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp GTCCACAGGCAGTTTGTTTGTAGAAAAGTTGTTCCCATTTCTCCTGACCTCAGCAAATTGTCCCCTCGATaGGGTCACTCCAAATCATCT +
Preference number: 4 (lower is better)
Translates to: VHRQFVCRKVVPISPDLSKLSPR*GHSKSS
Trigger: AGATGATTTGGAGTGACCTCATCGAGGGGACAATTT...GCTGAGGTCAGGAGAAATGGGAACAACTTTTCTACAAACAAACTGCCTGTGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR GCA 90 bp GAGAGGACAAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTTCCAAATCATCTTCATaGTCAGAACTAGGAAAACCT +
Preference number: 4 (lower is better)
Translates to: ERTRERERERERERERVCSKSSS*SELGKP
Trigger: AGGTTTTCCTAGTTCTGAGCATGAAGATGATTTGGA...ACACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTGTCCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATTGTAGCTCTGATTTCTaGCCTGGAATTGTTTGCAGA +
Preference number: 4 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYCSSDF*PGIVCR
Trigger: TCTGCAAACAATTCCAGGCCAGAAATCAGAGCTACA...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp GTCCACAGGCAGTTTGTTTGTAGAAAAGTTGTTCCCATTTCTCCTGACCTCAGCTGTAGCTCTGATTTCTaGCCTGGAATTGTTTGCAGA +
Preference number: 4 (lower is better)
Translates to: VHRQFVCRKVVPISPDLSCSSDF*PGIVCR
Trigger: TCTGCAAACAATTCCAGGCCAGAAATCAGAGCTACA...GCTGAGGTCAGGAGAAATGGGAACAACTTTTCTACAAACAAACTGCCTGTGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 72 bp GACCTCAGCCTTGGACTACGGCTATATAGATTTCATTaGTGTGTGACTGCTCTTCAGTTGGACTTGGTGTAT +
Preference number: 4 (lower is better)
Translates to: DLSLGLRLYRFH*CVTALQLDLVY
Trigger: ATACACCAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCCAAGGCTGAGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 72 bp ACCTGGATGGTGACATATCAGAAGTCCACAGGCAGTTaGTTTGTAGAAAAGTTGTTCCCATTTCTCCTGACC +
Preference number: 4 (lower is better)
Translates to: TWMVTYQKSTGS*FVEKLFPFLLT
Trigger: GGTCAGGAGAAATGGGAACAACTTTTCTACAAACAAACTGCCTGTGGACTTCTGATATGTCACCATCCAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 72 bp TTCAATTTGATGAGGTACCTAAAGGCCTGGAGGGCTTaGCCAATAAGCTTTCCTTCTCAGATATTCCTCCCT +
Preference number: 4 (lower is better)
Translates to: FNLMRYLKAWRA*PISFPSQIFLP
Trigger: AGGGAGGAATATCTGAGAAGGAAAGCTTATTGGCAAAGCCCTCCAGGCCTTTAGGTACCTCATCAAATTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 72 bp ACCTGTAGTCATGTAGACTCAATTCAGATCTTCAATTaGATGAGGTACCTAAAGGCCTGGAGGGCTTTGCCA +
Preference number: 4 (lower is better)
Translates to: TCSHVDSIQIFN*MRYLKAWRALP
Trigger: TGGCAAAGCCCTCCAGGCCTTTAGGTACCTCATCAAATTGAAGATCTGAATTGAGTCTACATGACTACAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp GGACTACGGCTATATAGATTTCATTTGTGTGTGACTGCTCTTCAGTTGGACTTGTCCAAGTCCAACAAGTaGAAGGAAAATTGTCCCCTC +
Preference number: 4 (lower is better)
Translates to: GLRLYRFHLCVTALQLDLSKSNK*KENCPL
Trigger: GAGGGGACAATTTTCCTTTCACTTGTTGGACTTGGA...CAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp AAATCTAAATACTGGGACTTTTATGAGGGTCATTGTGTGCAGTGTGCTAAAGCAATGTGGTCTGTGGTTTaGGCTTTCTCCACAGTGTGG +
Preference number: 4 (lower is better)
Translates to: KSKYWDFYEGHCVQCAKAMWSVV*AFSTVW
Trigger: CCACACTGTGGAGAAAGCTCAAACCACAGACCACAT...TGCTTTAGCACACTGCACACAATGACCCTCATAAAAGTCCCAGTATTTAGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR TCA 90 bp AAATCTAAATACTGGGACTTTTATGAGGGTCATTGTGTGCAGTGTGCTAAAGCACGTCACGAAGAGCCATaGAAGAAAGGAACAGCCACT +
Preference number: 4 (lower is better)
Translates to: KSKYWDFYEGHCVQCAKARHEEP*KKGTAT
Trigger: AGTGGCTGTTCCTTTCTTTCATGGCTCTTCGTGACG...TGCTTTAGCACACTGCACACAATGACCCTCATAAAAGTCCCAGTATTTAGATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR GCA 90 bp GTCCACAGGCAGTTTGTTTGTAGAAAAGTTGTTCCCATTTCTCCTGACCTCAGCTCCAAATCATCTTCATaGTCAGAACTAGGAAAACCT +
Preference number: 4 (lower is better)
Translates to: VHRQFVCRKVVPISPDLSSKSSS*SELGKP
Trigger: AGGTTTTCCTAGTTCTGAGCATGAAGATGATTTGGA...GCTGAGGTCAGGAGAAATGGGAACAACTTTTCTACAAACAAACTGCCTGTGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CCA 90 bp AAATCTAAATACTGGGACTTTTATGAGGGTCATTGTGTGCAGTGTGCTAAAGCAATGCCATGTGGTCTGTaGTTTGAGCTTTCTCCACAG +
Preference number: 4 (lower is better)
Translates to: KSKYWDFYEGHCVQCAKAMPCGL*FELSPQ
Trigger: CTGTGGAGAAAGCTCAAACCACAGACCACATGGCAT...TGCTTTAGCACACTGCACACAATGACCCTCATAAAAGTCCCAGTATTTAGATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR GCA 90 bp GGACTACGGCTATATAGATTTCATTTGTGTGTGACTGCTCTTCAGTTGGACTTGTCCAAATCATCTTCATaGTCAGAACTAGGAAAACCT +
Preference number: 4 (lower is better)
Translates to: GLRLYRFHLCVTALQLDLSKSSS*SELGKP
Trigger: AGGTTTTCCTAGTTCTGAGCATGAAGATGATTTGGA...CAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR GCA 90 bp AAATCTAAATACTGGGACTTTTATGAGGGTCATTGTGTGCAGTGTGCTAAAGCAAGAAAGACAAGAACATaGCATGTGGTCTGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: KSKYWDFYEGHCVQCAKARKTRT*HVVCGL
Trigger: CAAACCACAGACCACATGGCATGTTCTTGTCTTTCT...TGCTTTAGCACACTGCACACAATGACCCTCATAAAAGTCCCAGTATTTAGATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 72 bp GTTGCTTTGCCCTATTTAGTACCTCTCAGATACAGCTaGTCTGTGGGATTTCACAGTGATTATCAAAACTAT +
Preference number: 4 (lower is better)
Translates to: VALPYLVPLRYS*SVGFHSDYQNY
Trigger: ATAGTTTTGATAATCACTGTGAAATCCCACAGACAAGCTGTATCTGAGAGGTACTAAATAGGGCAAAGCAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
3UTR CAA 72 bp TCCAAGAGACTTCAAAAATATCATAGGCTATTACTGTaGTGCTTAGTTGCCTTCCATACCTTGAAAGTAAAG +
Preference number: 4 (lower is better)
Translates to: SKRLQKYHRLLL*CLVAFHTLKVK
Trigger: CTTTACTTTCAAGGTATGGAAGGCAACTAAGCACAACAGTAATAGCCTATGATATTTTTGAAGTCTCTTGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp GCTTTCCCACCTTGGAGCAGTGTCCTCAAGTTTCCCTATGGCCTGACACCCACCATTTCTGGCCTGGAATaGTTTGCAGACCCTGAGCTG +
Preference number: 5 (lower is better)
Translates to: AFPPWSSVLKFPYGLTPTISGLE*FADPEL
Trigger: CAGCTCAGGGTCTGCAAACAATTCCAGGCCAGAAAT...GGTGGGTGTCAGGCCATAGGGAAACTTGAGGACACTGCTCCAAGGTGGGAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATCATGTGGTCTGTGGTTaGAGCTTTCTCCACAGTGTG +
Preference number: 5 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYHVVCG*SFLHSV
Trigger: CACACTGTGGAGAAAGCTCAAACCACAGACCACATG...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp TCAGTGTTCCTGAGCAGTTTACACAGCCCTGGACTCAGGAACTGTCACTCTTATATTTCTGGCCTGGAATaGTTTGCAGACCCTGAGCTG +
Preference number: 5 (lower is better)
Translates to: SVFLSSLHSPGLRNCHSYISGLE*FADPEL
Trigger: CAGCTCAGGGTCTGCAAACAATTCCAGGCCAGAAAT...ATAAGAGTGACAGTTCCTGAGTCCAGGGCTGTGTAAACTGCTCAGGAACACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS TCA 90 bp CCTCTGTGTAGCTCTGATTTCTGGCCTGGAATTGTTTGCAGACCCTaGGCTGTAAAGATAGAGGACACGGACATGATGTTTGTACAGACG +
Preference number: 5 (lower is better)
Translates to: PLCSSDFWPGIVCRP*AVKIEDTDMMFVQT
Trigger: CGTCTGTACAAACATCATGTCCGTGTCCTCTATCTTTACAGCTCAGGGTCTGCAAACAATTCCAGGCCAGAAATCAGAGCTACACAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057516.2
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp GTGTGTGCATCATATGGGTGCCTGCTGCACATGGAGGCTAGAAAAGGTGTGAGAGGAACACAAATATCCTaGATGATCAGGATAAAAGGG +
Preference number: 5 (lower is better)
Translates to: VCASYGCLLHMEARKGVRGTQIS*MIRIKG
Trigger: CCCTTTTATCCTGATCATCAAGGATATTTGTGTTCC...TCTCACACCTTTTCTAGCCTCCATGTGCAGCAGGCACCCATATGATGCACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS CCA 90 bp AAGAGCCATGAAAGAAAGGAACAGCCACTTAACTGTGTGCCTGGATaGCAGCATATAGCAATACCCAGTAAACATCCCAACTACAGACCT +
Preference number: 5 (lower is better)
Translates to: KSHERKEQPLNCVPG*QHIAIPSKHPNYRP
Trigger: AGGTCTGTAGTTGGGATGTTTACTGGGTATTGCTATATGCTGCCATCCAGGCACACAGTTAAGTGGCTGTTCCTTTCTTTCATGGCTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057516.2
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp GGACTACGGCTATATAGATTTCATTTGTGTGTGACTGCTCTTCAGTTGGACTTGCATGTGGTCTGTGGTTaGAGCTTTCTCCACAGTGTG +
Preference number: 5 (lower is better)
Translates to: GLRLYRFHLCVTALQLDLHVVCG*SFLHSV
Trigger: CACACTGTGGAGAAAGCTCAAACCACAGACCACATG...CAAGTCCAACTGAAGAGCAGTCACACACAAATGAAATCTATATAGCCGTAGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp AATGGCCTCTCAAGAGCTATAGTCTATCTGGCAAAAACTTCAGTGTCAGACATTCATGTGGTCTGTGGTTaGAGCTTTCTCCACAGTGTG +
Preference number: 5 (lower is better)
Translates to: NGLSRAIVYLAKTSVSDIHVVCG*SFLHSV
Trigger: CACACTGTGGAGAAAGCTCAAACCACAGACCACATG...AATGTCTGACACTGAAGTTTTTGCCAGATAGACTATAGCTCTTGAGAGGCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp TTGAGGCTTAGGACAGCACAGAACAGTCCTAATTGCCCAGGTGCATGCTGTAAAGGAACACAAATATCCTaGATGATCAGGATAAAAGGG +
Preference number: 5 (lower is better)
Translates to: LRLRTAQNSPNCPGACCKGTQIS*MIRIKG
Trigger: CCCTTTTATCCTGATCATCAAGGATATTTGTGTTCC...TTTACAGCATGCACCTGGGCAATTAGGACTGTTCTGTGCTGTCCTAAGCCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS-3UTR CAA 90 bp AAATCTAAATACTGGGACTTTTATGAGGGTCATTGTGTGCAGTGTGCTAAAGCAGGAACACAAATATCCTaGATGATCAGGATAAAAGGG +
Preference number: 5 (lower is better)
Translates to: KSKYWDFYEGHCVQCAKAGTQIS*MIRIKG
Trigger: CCCTTTTATCCTGATCATCAAGGATATTTGTGTTCC...TGCTTTAGCACACTGCACACAATGACCCTCATAAAAGTCCCAGTATTTAGATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS CCA 72 bp GAAAGAAAGGAACAGCCACTTAACTGTGTGCCTGGATaGCAGCATATAGCAATACCCAGTAAACATCCCAAC +
Preference number: 6 (lower is better)
Translates to: ERKEQPLNCVPG*QHIAIPSKHPN
Trigger: GTTGGGATGTTTACTGGGTATTGCTATATGCTGCCATCCAGGCACACAGTTAAGTGGCTGTTCCTTTCTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057516.2
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2
CDS TCA 72 bp CAAGTCCAACAAGTGAAAGGAAAATTGTCCCCTCGATaGGGTCACTCCAAATCATCTTCATGCTCAGAACTA +
Preference number: 6 (lower is better)
Translates to: QVQQVKGKLSPR*GHSKSSSCSEL
Trigger: TAGTTCTGAGCATGAAGATGATTTGGAGTGACCTCATCGAGGGGACAATTTTCCTTTCACTTGTTGGACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057516.2
ENSMUST00000227457.2
ENSMUST00000227562.2
ENSMUST00000228303.2