Pregenerated sensors for VMN1R19 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115799

Ensembl transcript IDs: ENSMUST00000089830.4

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR GCA 90 bp	AGAGACCTCATGTGGAAAGAGCAATGTATGCTGTACAACGTACTTAAGTTTATATCAGGAATGCACACATaGATACATGCTGGTATGACA	+
Preference number: 2 (lower is better) Translates to: RDLMWKEQCMLYNVLKFISGMHT*IHAGMT Trigger: TGTCATACCAGCATGTATGCATGTGTGCATTCCTGA...TATAAACTTAAGTACGTTGTACAGCATACATTGCTCTTTCCACATGAGGTCTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
3UTR-3UTR TCA 90 bp	CTTAAGTTTATAGGACTTGGCATCAGTAATGTCAAAAGAATACACACACACACAATCTCTTCAGACCTTTaGACTTCAGGAATGCACACA	+
Preference number: 2 (lower is better) Translates to: LKFIGLGISNVKRIHTHTISSDL*TSGMHT Trigger: TGTGTGCATTCCTGAAGTTCAAAGGTCTGAAGAGAT...TGTGTGTGTGTGTATTCTTTTGACATTACTGATGCCAAGTCCTATAAACTTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
3UTR-3UTR CAA 90 bp	GAGAAAAGAGACCTCATGTGGAAAGAGCAATGTATGCTGTACAACGTACTTAAGAAAAAGCATAATTATTaGGGCTATACCAGCACAGCA	+
Preference number: 3 (lower is better) Translates to: EKRDLMWKEQCMLYNVLKKKHNY*GYTSTA Trigger: TGCTGTGCTGGTATAGCCCAAATAATTATGCTTTTT...CTTAAGTACGTTGTACAGCATACATTGCTCTTTCCACATGAGGTCTCTTTTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR TCA 90 bp	AAGAGAAAAGAGACCTCATGTGGAAAGAGCAATGTATGCTGTACAACGTACTTATACATCACAAACTGCTaGACAGTCAGGATGACTGGG	+
Preference number: 4 (lower is better) Translates to: KRKETSCGKSNVCCTTYLYITNC*TVRMTG Trigger: CCCAGTCATCCTGACTGTTCAGCAGTTTGTGATGTA...TAAGTACGTTGTACAGCATACATTGCTCTTTCCACATGAGGTCTCTTTTCTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR TCA 90 bp	GAGAAAAGAGACCTCATGTGGAAAGAGCAATGTATGCTGTACAACGTACTTAAGTTCTCTTATCAGAACTaGTCTGCACCAAAGGAGCAA	+
Preference number: 4 (lower is better) Translates to: EKRDLMWKEQCMLYNVLKFSYQN*SAPKEQ Trigger: TTGCTCCTTTGGTGCAGATCAGTTCTGATAAGAGAA...CTTAAGTACGTTGTACAGCATACATTGCTCTTTCCACATGAGGTCTCTTTTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR GCA 90 bp	CTTAAGTTTATAGGACTTGGCATCAGTAATGTCAAAAGAATACACACACACACACCTTTTCTCAGGGGATaGTCTCAGGTAGCTGATGCT	+
Preference number: 4 (lower is better) Translates to: LKFIGLGISNVKRIHTHTPFLRG*SQVADA Trigger: AGCATCAGCTACCTGAGAGCATCCCCTGAGAAAAGG...TGTGTGTGTGTGTATTCTTTTGACATTACTGATGCCAAGTCCTATAAACTTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR TCA 90 bp	AAAGAGACCTCATGTGGAAAGAGCAATGTATGCTGTACAACGTACTTAAGTTTAGTTCATGGGAAAGAGTaGGCAGGATTTAGTGACCTT	+
Preference number: 4 (lower is better) Translates to: KETSCGKSNVCCTTYLSLVHGKE*AGFSDL Trigger: AAGGTCACTAAATCCTGCTCACTCTTTCCCATGAAC...TAAACTTAAGTACGTTGTACAGCATACATTGCTCTTTCCACATGAGGTCTCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR GCA 90 bp	AAAAATGATCTCTTCAGACCTTTGAACTTCAGGAATGCACACATGCATACATGCTTATCAGAACTGATCTaGACCAAAGGAGCAATTGTG	+
Preference number: 4 (lower is better) Translates to: KNDLFRPLNFRNAHMHTCLSELI*TKGAIV Trigger: CACAATTGCTCCTTTGGTGCAGATCAGTTCTGATAA...GCATGTATGCATGTGTGCATTCCTGAAGTTCAAAGGTCTGAAGAGATCATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR TCA 90 bp	CTTAAGTTTATAGGACTTGGCATCAGTAATGTCAAAAGAATACACACACACACACCACCTACTACTGAATaGCAAATTGAAAGACCAGAG	+
Preference number: 4 (lower is better) Translates to: LKFIGLGISNVKRIHTHTPPTTE*QIERPE Trigger: CTCTGGTCTTTCAATTTGTCATTCAGTAGTAGGTGG...TGTGTGTGTGTGTATTCTTTTGACATTACTGATGCCAAGTCCTATAAACTTAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR GCA 90 bp	AAAAATGATCTCTTCAGACCTTTGAACTTCAGGAATGCACACATGCATACATGCTTTACTCTTAAATTTTaGCAACAAAGAGGTACTGGG	+
Preference number: 4 (lower is better) Translates to: KNDLFRPLNFRNAHMHTCFTLKF*QQRGTG Trigger: CCCAGTACCTCTTTGTTGGCAAAATTTAAGAGTAAA...GCATGTATGCATGTGTGCATTCCTGAAGTTCAAAGGTCTGAAGAGATCATTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR CAA 90 bp	TCAGGAATGCACACATGCATACATGCTGGTATGACACTGGTACATATAAATAAAGCACCAAAGGAGCAATaGTGGGATAGGCATACATCA	+
Preference number: 5 (lower is better) Translates to: SGMHTCIHAGMTLVHINKAPKEQ*WDRHTS Trigger: TGATGTATGCCTATCCCACAATTGCTCCTTTGGTGC...TTTATTTATATGTACCAGTGTCATACCAGCATGTATGCATGTGTGCATTCCTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR CAA 90 bp	AGAGACCTCATGTGGAAAGAGCAATGTATGCTGTACAACGTACTTAAGTTTATAGAGTCCAAGTCCAGCTaGGATATAAAGGACATTCTC	+
Preference number: 5 (lower is better) Translates to: RDLMWKEQCMLYNVLKFIESKSS*DIKDIL Trigger: GAGAATGTCCTTTATATCCAAGCTGGACTTGGACTC...TATAAACTTAAGTACGTTGTACAGCATACATTGCTCTTTCCACATGAGGTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS-3UTR CAA 90 bp	TCAGGAATGCACACATGCATACATGCTGGTATGACACTGGTACATATAAATAAAGTGACTCTAATATGTTaGCAAGCAAGTTATCTCCTT	+
Preference number: 5 (lower is better) Translates to: SGMHTCIHAGMTLVHINKVTLIC*QASYLL Trigger: AAGGAGATAACTTGCTTGCAAACATATTAGAGTCAC...TTTATTTATATGTACCAGTGTCATACCAGCATGTATGCATGTGTGCATTCCTGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089830.4
CDS CCA 72 bp	ATGGGAAAGAGTGAGCAGGATTTAGTGACCTTCATCTaGCGGTTTTCACTCACATTGGTAAAACCAGCAACA	+
Preference number: 6 (lower is better) Translates to: MGKSEQDLVTFI*RFSLTLVKPAT Trigger: TGTTGCTGGTTTTACCAATGTGAGTGAAAACCGCCAGATGAAGGTCACTAAATCCTGCTCACTCTTTCCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089830.4