Pregenerated sensors for VMN1R189 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000099611Ensembl transcript IDs: ENSMUST00000186062.3, ENSMUST00000227357.2, ENSMUST00000228428.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTTTCTTCTTCAGAGACAGATCAGGCTGTCTGGGTGTCAGCAGGTaGTTTTACCCACTGAGTCATCTCTCCAGCCCACTGTCTATACCT | + |
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Preference number: 1 (lower is better) Translates to: VFFFRDRSGCLGVSR*FYPLSHLSSPLSIP Trigger: AGGTATAGACAGTGGGCTGGAGAGATGACTCAGTGGGTAAAATCACCTGCTGACACCCAGACAGCCTGATCTGTCTCTGAAGAAGAAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR CCA 90 bp | ACCATGCATTGGATCAGAACAATCTGTGTAACTTCAGTCAATCACTaGATGTCCAGGATCTACAGGCAGAGGGCATGCACATTTTGCATA | + |
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Preference number: 1 (lower is better) Translates to: TMHWIRTICVTSVNH*MSRIYRQRACTFCI Trigger: TATGCAAAATGTGCATGCCCTCTGCCTGTAGATCCTGGACATCCAGTGATTGACTGAAGTTACACAGATTGTTCTGATCCAATGCATGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR TCA 90 bp | GGACTCCTTCATTTAAATGAATCAGATTATTTCGATGCTCTTTGGTaGTATGTACTATGGTGGTGTGGCTGCACTGTGCTGTGGAGAGCA | + |
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Preference number: 1 (lower is better) Translates to: GLLHLNESDYFDALW*YVLWWCGCTVLWRA Trigger: TGCTCTCCACAGCACAGTGCAGCCACACCACCATAGTACATATCACCAAAGAGCATCGAAATAATCTGATTCATTTAAATGAAGGAGTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR GCA 90 bp | ACTTCAGTCAATCACTGGATGTCCAGGATCTACAGGCAGAGGGCATaGACATTTTGCATAGTTATAAATGCAGGCAAATACACACACACA | + |
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Preference number: 1 (lower is better) Translates to: TSVNHWMSRIYRQRA*TFCIVINAGKYTHT Trigger: TGTGTGTGTGTATTTGCCTGCATTTATAACTATGCAAAATGTGCATGCCCTCTGCCTGTAGATCCTGGACATCCAGTGATTGACTGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCCATGTGAGCATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTGGGGCTCTTTAGGCCTGTATaGGCATCTGTTCACATGTGG | + |
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Preference number: 2 (lower is better) Translates to: CPCEHLSMPVEIRGQHVGLFRPV*ASVHMW Trigger: CCACATGTGAACAGATGCCCATACAGGCCTAAAGAG...CCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR GCA 90 bp | TGTCCATGTGAGCATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTGGGGGATAGTGAAGAGACCTaGTTCTCTTGCACAGAACTT | + |
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Preference number: 2 (lower is better) Translates to: CPCEHLSMPVEIRGQHVGDSEET*FSCTEL Trigger: AAGTTCTGTGCAAGAGAAGCAGGTCTCTTCACTATC...CCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCCATGTGAGCATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTGGGGGAATTACATGAGCAATaGGTGTTACCTACAGACAAG | + |
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Preference number: 2 (lower is better) Translates to: CPCEHLSMPVEIRGQHVGELHEQ*VLPTDK Trigger: CTTGTCTGTAGGTAACACCCATTGCTCATGTAATTC...CCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGCAATAACAAAGGGTAGCTGCAAACCAGGCTTGCTCGGCTTCAGTCACACTCTACCAACCATGCATTaGATCAGAACAATCTGTGTA | + |
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Preference number: 2 (lower is better) Translates to: GAITKGSCKPGLLGFSHTLPTMH*IRTICV Trigger: TACACAGATTGTTCTGATCCAATGCATGGTTGGTAG...AGTGTGACTGAAGCCGAGCAAGCCTGGTTTGCAGCTACCCTTTGTTATTGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR GCA 90 bp | CGATGCTCTTTGGTGATATGTACTATGGTGGTGTGGCTGCACTGTGCTGTGGAGTACAGGCAGAGGGCATaGACATTTTGCATAGTTATA | + |
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Preference number: 2 (lower is better) Translates to: RCSLVICTMVVWLHCAVEYRQRA*TFCIVI Trigger: TATAACTATGCAAAATGTGCATGCCCTCTGCCTGTA...CTCCACAGCACAGTGCAGCCACACCACCATAGTACATATCACCAAAGAGCATCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR GCA 90 bp | GGGGCAATAACAAAGGGTAGCTGCAAACCAGGCTTGCTCGGCTTCAGTCACACTAATTTCTACCAACCATaGATTGGATCAGAACAATCT | + |
|
Preference number: 2 (lower is better) Translates to: GAITKGSCKPGLLGFSHTNFYQP*IGSEQS Trigger: AGATTGTTCTGATCCAATGCATGGTTGGTAGAAATT...AGTGTGACTGAAGCCGAGCAAGCCTGGTTTGCAGCTACCCTTTGTTATTGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR CAA 90 bp | TCTGGTGTTCCAGAGAAGCCAGGTTTAATTTCTACCAACCATGCATaGGATCAGAACAATCTGTGTAACTTCAGTCAATCACTGGATGTC | + |
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Preference number: 2 (lower is better) Translates to: SGVPEKPGLISTNHA*DQNNLCNFSQSLDV Trigger: GACATCCAGTGATTGACTGAAGTTACACAGATTGTTCTGATCCAATGCATGGTTGGTAGAAATTAAACCTGGCTTCTCTGGAACACCAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAACTCCCACATTACTTACAGACACATTaGAGTTTTCCAAGTTATCCC | + |
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Preference number: 2 (lower is better) Translates to: EETCFSCTELYFLTQLPHYLQTH*SFPSYP Trigger: GGGATAACTTGGAAAACTTCAATGTGTCTGTAAGTA...ATGTGGGAGTTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR GCA 90 bp | ACCAGGCTTGCTCGGCTTCAGTCACACTCATCGAATCAGTTAGTAAAAGACAAAAGGGCATGCACATTTTaGATAGTTATAAATGCAGGC | + |
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Preference number: 2 (lower is better) Translates to: TRLARLQSHSSNQLVKDKRACTF*IVINAG Trigger: GCCTGCATTTATAACTATGCAAAATGTGCATGCCCT...TTTGTCTTTTACTAACTGATTCGATGAGTGTGACTGAAGCCGAGCAAGCCTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR GCA 90 bp | AGGGATAGTGAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAATACAGGCAGAGGGCATaGACATTTTGCATAGTTATA | + |
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Preference number: 2 (lower is better) Translates to: RDSEETCFSCTELYFLTQYRQRA*TFCIVI Trigger: TATAACTATGCAAAATGTGCATGCCCTCTGCCTGTA...TTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTCACTATCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAACTCCCACATGCATCTGTTCACATGTaGTATACATTCATACAGACA | + |
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Preference number: 2 (lower is better) Translates to: EETCFSCTELYFLTQLPHASVHM*YTFIQT Trigger: TGTCTGTATGAATGTATACCACATGTGAACAGATGC...ATGTGGGAGTTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR GCA 72 bp | TGTCCCTGTGTGTGTGTCCATGTGAGCATCTCAGCATaGCTGTGGAGATCAGAGGACAGCATGTGGGGGTCA | + |
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Preference number: 3 (lower is better) Translates to: CPCVCVHVSISA*LWRSEDSMWGS Trigger: TGACCCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACACACACACAGGGACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CAA 90 bp | TGTCCATGTGAGCATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTGGGGCAGCACTTAGGAGCATaGTCTGGTGTTCCAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: CPCEHLSMPVEIRGQHVGQHLGA*SGVPEK Trigger: CTTCTCTGGAACACCAGACAATGCTCCTAAGTGCTG...CCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CAA 90 bp | CGATGCTCTTTGGTGATATGTACTATGGTGGTGTGGCTGCACTGTGCTGTGGAGCAGCACTTAGGAGCATaGTCTGGTGTTCCAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: RCSLVICTMVVWLHCAVEQHLGA*SGVPEK Trigger: CTTCTCTGGAACACCAGACAATGCTCCTAAGTGCTG...CTCCACAGCACAGTGCAGCCACACCACCATAGTACATATCACCAAAGAGCATCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR TCA 72 bp | CAGGCTGTCTGGGTGTCAGCAGGTGATTTTACCCACTaGGTCATCTCTCCAGCCCACTGTCTATACCTAATG | + |
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Preference number: 3 (lower is better) Translates to: QAVWVSAGDFTH*VISPAHCLYLM Trigger: CATTAGGTATAGACAGTGGGCTGGAGAGATGACTCAGTGGGTAAAATCACCTGCTGACACCCAGACAGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR CCA 72 bp | ATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTaGGGGTCAGTTTTCTTCTTCAGAGACAGATCAGGC | + |
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Preference number: 3 (lower is better) Translates to: ISACLWRSEDSM*GSVFFFRDRSG Trigger: GCCTGATCTGTCTCTGAAGAAGAAAACTGACCCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CAA 90 bp | TGTCCATGTGAGCATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTGGGGGAGGGCATGCACATTTaGCATAGTTATAAATGCAGG | + |
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Preference number: 3 (lower is better) Translates to: CPCEHLSMPVEIRGQHVGEGMHI*HSYKCR Trigger: CCTGCATTTATAACTATGCAAAATGTGCATGCCCTC...CCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CAA 90 bp | AGGGATAGTGAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAAAGCTGCAAACCAGGCTaGCTCGGCTTCAGTCACACT | + |
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Preference number: 3 (lower is better) Translates to: RDSEETCFSCTELYFLTQSCKPG*LGFSHT Trigger: AGTGTGACTGAAGCCGAGCAAGCCTGGTTTGCAGCT...TTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTCACTATCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR GCA 72 bp | AGGAGGAGGAGGGATAGTGAAGAGACCTGCTTCTCTTaGACAGAACTTTACTTCCTTACCCAACTCCCACAT | + |
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Preference number: 3 (lower is better) Translates to: RRRRDSEETCFS*TELYFLTQLPH Trigger: ATGTGGGAGTTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTCACTATCCCTCCTCCTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR TCA 72 bp | TCTCTCTCAGCTAAGCTCAAGGCTTTGAGTCACACATaGCTGAGGATAACCACATGCTTAAACTGCTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: SLSAKLKALSHT*LRITTCLNCFV Trigger: CACAAAGCAGTTTAAGCATGTGGTTATCCTCAGTCATGTGTGACTCAAAGCCTTGAGCTTAGCTGAGAGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR CCA 72 bp | AGCTCCTTGGGACCTAAAACTCTCTTTAGGCCTGTATaGGCATCTGTTCACATGTGGTATACATTCATACAG | + |
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Preference number: 3 (lower is better) Translates to: SSLGPKTLFRPV*ASVHMWYTFIQ Trigger: CTGTATGAATGTATACCACATGTGAACAGATGCCCATACAGGCCTAAAGAGAGTTTTAGGTCCCAAGGAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR TCA 72 bp | CATTTAAATGAATCAGATTATTTCGATGCTCTTTGGTaGTATGTACTATGGTGGTGTGGCTGCACTGTGCTG | + |
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Preference number: 3 (lower is better) Translates to: HLNESDYFDALW*YVLWWCGCTVL Trigger: CAGCACAGTGCAGCCACACCACCATAGTACATATCACCAAAGAGCATCGAAATAATCTGATTCATTTAAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR TCA 72 bp | GAAAAGGGCTTTAACATAAGAGCAGTGAGAATTACATaGGCAATGGGTGTTACCTACAGACAAGTCACACTT | + |
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Preference number: 3 (lower is better) Translates to: EKGFNIRAVRIT*AMGVTYRQVTL Trigger: AAGTGTGACTTGTCTGTAGGTAACACCCATTGCTCATGTAATTCTCACTGCTCTTATGTTAAAGCCCTTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR-3UTR CAA 90 bp | AGGCCTGTATGGGCATCTGTTCACATGTGGTATACATTCATACAGACATATACATTATTTCGATGCTCTTaGGTGATATGTACTATGGTG | + |
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Preference number: 3 (lower is better) Translates to: RPVWASVHMWYTFIQTYTLFRCS*VICTMV Trigger: CACCATAGTACATATCACCAAAGAGCATCGAAATAA...TGTATATGTCTGTATGAATGTATACCACATGTGAACAGATGCCCATACAGGCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | GGGGCAATAACAAAGGGTAGCTGCAAACCAGGCTTGCTCGGCTTCAGTCACACTGTGCCTTGCAGACTTTaGCCTGAGCCTCCTCCACCC | + |
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Preference number: 4 (lower is better) Translates to: GAITKGSCKPGLLGFSHTVPCRL*PEPPPP Trigger: GGGTGGAGGAGGCTCAGGCCAAAGTCTGCAAGGCAC...AGTGTGACTGAAGCCGAGCAAGCCTGGTTTGCAGCTACCCTTTGTTATTGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR TCA 90 bp | GAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAACTCCCACATTGGCCTGGACCACAGTaGGGAGACTTCTGGTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: EETCFSCTELYFLTQLPHWPGPQ*GDFWCR Trigger: TCTGCACCAGAAGTCTCCTCACTGTGGTCCAGGCCA...ATGTGGGAGTTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR TCA 90 bp | AGGGATAGTGAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAATGGCCTGGACCACAGTaGGGAGACTTCTGGTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RDSEETCFSCTELYFLTQWPGPQ*GDFWCR Trigger: TCTGCACCAGAAGTCTCCTCACTGTGGTCCAGGCCA...TTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTCACTATCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | TGTCCATGTGAGCATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTGGGGTTCTGTAGAGAAGCTTaGAGTTCTGAAGGTAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: CPCEHLSMPVEIRGQHVGFCREA*SSEGRG Trigger: TCCTCTACCTTCAGAACTCCAAGCTTCTCTACAGAA...CCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR GCA 90 bp | GAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAACTCCCACATCCTCCTCCACCCAGATaGTCTGGGACTGATGATGAT | + |
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Preference number: 4 (lower is better) Translates to: EETCFSCTELYFLTQLPHPPPPR*SGTDDD Trigger: ATCATCATCAGTCCCAGAGCATCTGGGTGGAGGAGG...ATGTGGGAGTTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | TATATCGGTAAGTATTTTTCAGAATGTGCCCATCAGATTCTTCGAACCATGTCAGACTTCTGGTGCAGATaGAGAGGCCCCGGGCCACCC | + |
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Preference number: 4 (lower is better) Translates to: YIGKYFSECAHQILRTMSDFWCR*RGPGPP Trigger: GGGTGGCCCGGGGCCTCTCCATCTGCACCAGAAGTC...TGACATGGTTCGAAGAATCTGATGGGCACATTCTGAAAAATACTTACCGATATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | AGGCCTGTATGGGCATCTGTTCACATGTGGTATACATTCATACAGACATATACAGTGCCTTGCAGACTTTaGCCTGAGCCTCCTCCACCC | + |
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Preference number: 4 (lower is better) Translates to: RPVWASVHMWYTFIQTYTVPCRL*PEPPPP Trigger: GGGTGGAGGAGGCTCAGGCCAAAGTCTGCAAGGCAC...TGTATATGTCTGTATGAATGTATACCACATGTGAACAGATGCCCATACAGGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR TCA 90 bp | ATCTACAGGCAGAGGGCATGCACATTTTGCATAGTTATAAATGCAGGCAAATACTTGCAGACTTTGGCCTaGGCCTCCTCCACCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: IYRQRACTFCIVINAGKYLQTLA*ASSTQM Trigger: CATCTGGGTGGAGGAGGCTCAGGCCAAAGTCTGCAA...GTATTTGCCTGCATTTATAACTATGCAAAATGTGCATGCCCTCTGCCTGTAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | TGTCCATGTGAGCATCTCAGCATGCCTGTGGAGATCAGAGGACAGCATGTGGGGTTTGTAAAAGCCAAGTaGATGAGAATAACGTGTATG | + |
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Preference number: 4 (lower is better) Translates to: CPCEHLSMPVEIRGQHVGFVKAK*MRITCM Trigger: CATACACGTTATTCTCATCCACTTGGCTTTTACAAA...CCCCACATGCTGTCCTCTGATCTCCACAGGCATGCTGAGATGCTCACATGGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | ACCAGGCTTGCTCGGCTTCAGTCACACTCATCGAATCAGTTAGTAAAAGACAAACTGATGATGATGGCCTaGACCACAGTGAGGAGACTT | + |
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Preference number: 4 (lower is better) Translates to: TRLARLQSHSSNQLVKDKLMMMA*TTVRRL Trigger: AAGTCTCCTCACTGTGGTCCAGGCCATCATCATCAG...TTTGTCTTTTACTAACTGATTCGATGAGTGTGACTGAAGCCGAGCAAGCCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR CAA 72 bp | ATCATAGGATGCATGACAGCTTGTAGCTCTAGCTCCTaGGGACCTAAAACTCTCTTTAGGCCTGTATGGGCA | + |
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Preference number: 4 (lower is better) Translates to: IIGCMTACSSSS*GPKTLFRPVWA Trigger: TGCCCATACAGGCCTAAAGAGAGTTTTAGGTCCCAAGGAGCTAGAGCTACAAGCTGTCATGCATCCTATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR TCA 90 bp | TATATCGGTAAGTATTTTTCAGAATGTGCCCATCAGATTCTTCGAACCATGTCATTGCAGACTTTGGCCTaGGCCTCCTCCACCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: YIGKYFSECAHQILRTMSLQTLA*ASSTQM Trigger: CATCTGGGTGGAGGAGGCTCAGGCCAAAGTCTGCAA...TGACATGGTTCGAAGAATCTGATGGGCACATTCTGAAAAATACTTACCGATATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR GCA 90 bp | ATCTACAGGCAGAGGGCATGCACATTTTGCATAGTTATAAATGCAGGCAAATACTGGAAGGATGTGCCTTaGAGACTTTGGCCTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: IYRQRACTFCIVINAGKYWKDVP*RLWPEP Trigger: AGGCTCAGGCCAAAGTCTGCAAGGCACATCCTTCCA...GTATTTGCCTGCATTTATAACTATGCAAAATGTGCATGCCCTCTGCCTGTAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | GAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAACTCCCACATAGCTGCTACTGTCTTTaGCAGTCCTTTTGTAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: EETCFSCTELYFLTQLPHSCYCL*QSFCKK Trigger: CTTCTTACAAAAGGACTGCCAAAGACAGTAGCAGCT...ATGTGGGAGTTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | ATCTACAGGCAGAGGGCATGCACATTTTGCATAGTTATAAATGCAGGCAAATACCTGATGATGATGGCCTaGACCACAGTGAGGAGACTT | + |
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Preference number: 4 (lower is better) Translates to: IYRQRACTFCIVINAGKYLMMMA*TTVRRL Trigger: AAGTCTCCTCACTGTGGTCCAGGCCATCATCATCAG...GTATTTGCCTGCATTTATAACTATGCAAAATGTGCATGCCCTCTGCCTGTAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR CAA 72 bp | GATGTCCAGGATCTACAGGCAGAGGGCATGCACATTTaGCATAGTTATAAATGCAGGCAAATACACACACAC | + |
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Preference number: 4 (lower is better) Translates to: DVQDLQAEGMHI*HSYKCRQIHTH Trigger: GTGTGTGTGTATTTGCCTGCATTTATAACTATGCAAAATGTGCATGCCCTCTGCCTGTAGATCCTGGACATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR GCA 90 bp | AGGCCTGTATGGGCATCTGTTCACATGTGGTATACATTCATACAGACATATACACAGGGGGCTAAAAGTTaGATAACCAAGGGTCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: RPVWASVHMWYTFIQTYTQGAKS*ITKGQK Trigger: TTTCTGACCCTTGGTTATGCAACTTTTAGCCCCCTG...TGTATATGTCTGTATGAATGTATACCACATGTGAACAGATGCCCATACAGGCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR GCA 90 bp | TATATCGGTAAGTATTTTTCAGAATGTGCCCATCAGATTCTTCGAACCATGTCAAAGAATGGAAGGATGTaGCTTGCAGACTTTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: YIGKYFSECAHQILRTMSKNGRM*LADFGL Trigger: CAGGCCAAAGTCTGCAAGGCACATCCTTCCATTCTT...TGACATGGTTCGAAGAATCTGATGGGCACATTCTGAAAAATACTTACCGATATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | ATCTACAGGCAGAGGGCATGCACATTTTGCATAGTTATAAATGCAGGCAAATACAGCTGCTACTGTCTTTaGCAGTCCTTTTGTAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: IYRQRACTFCIVINAGKYSCYCL*QSFCKK Trigger: CTTCTTACAAAAGGACTGCCAAAGACAGTAGCAGCT...GTATTTGCCTGCATTTATAACTATGCAAAATGTGCATGCCCTCTGCCTGTAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR GCA 90 bp | TATATCGGTAAGTATTTTTCAGAATGTGCCCATCAGATTCTTCGAACCATGTCACAGGGGGCTAAAAGTTaGATAACCAAGGGTCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: YIGKYFSECAHQILRTMSQGAKS*ITKGQK Trigger: TTTCTGACCCTTGGTTATGCAACTTTTAGCCCCCTG...TGACATGGTTCGAAGAATCTGATGGGCACATTCTGAAAAATACTTACCGATATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| 3UTR CAA 72 bp | CCAGAGAAGCCAGGTTTAATTTCTACCAACCATGCATaGGATCAGAACAATCTGTGTAACTTCAGTCAATCA | + |
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Preference number: 4 (lower is better) Translates to: PEKPGLISTNHA*DQNNLCNFSQS Trigger: TGATTGACTGAAGTTACACAGATTGTTCTGATCCAATGCATGGTTGGTAGAAATTAAACCTGGCTTCTCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CCA 90 bp | TGTTCCAGAGAAGCCAGGTTTAATTTCTACCAACCATGCATTGGATCAGAACAATTTGTAAAAGCCAAGTaGATGAGAATAACGTGTATG | + |
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Preference number: 4 (lower is better) Translates to: CSREARFNFYQPCIGSEQFVKAK*MRITCM Trigger: CATACACGTTATTCTCATCCACTTGGCTTTTACAAA...TTGTTCTGATCCAATGCATGGTTGGTAGAAATTAAACCTGGCTTCTCTGGAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS GCA 90 bp | AAATACCATGTAGCCACTGGCCCCTCCCATGGCACCCTGAAACACTaGATCTCTCAGGACCATGAGAGGGAGAACAATCCCTTTTATTTC | + |
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Preference number: 5 (lower is better) Translates to: KYHVATGPSHGTLKH*ISQDHERENNPFYF Trigger: GAAATAAAAGGGATTGTTCTCCCTCTCATGGTCCTGAGAGATGCAGTGTTTCAGGGTGCCATGGGAGGGGCCAGTGGCTACATGGTATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS GCA 90 bp | ATTAAACCATTGAGTATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCTTGCAGACTTTGGCCTGAGCCTCCTCCACCCAGATGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: IKPLSIQKNEKNGRM*LADFGLSLLHPDAL Trigger: CAGAGCATCTGGGTGGAGGAGGCTCAGGCCAAAGTCTGCAAGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAATGGTTTAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CAA 90 bp | ATGCTCTTTGGTGATATGTACTATGGTGGTGTGGCTGCACTGTGCTGTGGAGAGGAAATTCTAGAGTATTaGCCACCAATGTATTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: MLFGDMYYGGVAALCCGEEILEY*PPMYCP Trigger: GGGACAATACATTGGTGGCAAATACTCTAGAATTTC...CTCTCCACAGCACAGTGCAGCCACACCACCATAGTACATATCACCAAAGAGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CAA 90 bp | ACCAGGCTTGCTCGGCTTCAGTCACACTCATCGAATCAGTTAGTAAAAGACAAATTTGCCACCAATGTATaGTCCCTTGAAGAGAGACTT | + |
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Preference number: 5 (lower is better) Translates to: TRLARLQSHSSNQLVKDKFATNV*SLEERL Trigger: AAGTCTCTCTTCAAGGGACAATACATTGGTGGCAAA...TTTGTCTTTTACTAACTGATTCGATGAGTGTGACTGAAGCCGAGCAAGCCTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CAA 90 bp | GAAGAGACCTGCTTCTCTTGCACAGAACTTTACTTCCTTACCCAACTCCCACATGAAATTCTAGAGTATTaGCCACCAATGTATTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: EETCFSCTELYFLTQLPHEILEY*PPMYCP Trigger: GGGACAATACATTGGTGGCAAATACTCTAGAATTTC...ATGTGGGAGTTGGGTAAGGAAGTAAAGTTCTGTGCAAGAGAAGCAGGTCTCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS-3UTR CAA 90 bp | ATCTACAGGCAGAGGGCATGCACATTTTGCATAGTTATAAATGCAGGCAAATACTTTGCCACCAATGTATaGTCCCTTGAAGAGAGACTT | + |
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Preference number: 5 (lower is better) Translates to: IYRQRACTFCIVINAGKYFATNV*SLEERL Trigger: AAGTCTCTCTTCAAGGGACAATACATTGGTGGCAAA...GTATTTGCCTGCATTTATAACTATGCAAAATGTGCATGCCCTCTGCCTGTAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS GCA 72 bp | TTGAGTATCCAAAAGAATGAGAAGAATGGAAGGATGTaGCTTGCAGACTTTGGCCTGAGCCTCCTCCACCCA | + |
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Preference number: 6 (lower is better) Translates to: LSIQKNEKNGRM*LADFGLSLLHP Trigger: TGGGTGGAGGAGGCTCAGGCCAAAGTCTGCAAGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS TCA 72 bp | CGTGTATGGGTTTCTTCTCAGGGCTTCCCCACCAACTaGACATATAATTCGCAGAAACAGACATATTCCCCA | + |
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Preference number: 6 (lower is better) Translates to: RVWVSSQGFPTN*TYNSQKQTYSP Trigger: TGGGGAATATGTCTGTTTCTGCGAATTATATGTTCAGTTGGTGGGGAAGCCCTGAGAAGAAACCCATACACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS CAA 90 bp | CCTGTACCTGTGATGGAATGGATTAGGCTCATACTTATTAAACCATaGAGTATCCAAAAGAATGAGAAGAATGGAAGGATGTGCCTTGCA | + |
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Preference number: 6 (lower is better) Translates to: PVPVMEWIRLILIKP*SIQKNEKNGRMCLA Trigger: TGCAAGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAATGGTTTAATAAGTATGAGCCTAATCCATTCCATCACAGGTACAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS CAA 72 bp | GTGATGGAATGGATTAGGCTCATACTTATTAAACCATaGAGTATCCAAAAGAATGAGAAGAATGGAAGGATG | + |
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Preference number: 6 (lower is better) Translates to: VMEWIRLILIKP*SIQKNEKNGRM Trigger: CATCCTTCCATTCTTCTCATTCTTTTGGATACTCAATGGTTTAATAAGTATGAGCCTAATCCATTCCATCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS CCA 72 bp | AGCTGTGATATATTAAAACCTGTACCTGTGATGGAATaGATTAGGCTCATACTTATTAAACCATTGAGTATC | + |
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Preference number: 6 (lower is better) Translates to: SCDILKPVPVME*IRLILIKPLSI Trigger: GATACTCAATGGTTTAATAAGTATGAGCCTAATCCATTCCATCACAGGTACAGGTTTTAATATATCACAGCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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| CDS CAA 72 bp | GAGAGGGAGAACAATCCCTTTTATTTCCTGACTTTCTaGCATAAAATAGCAATAGTTGTCACTATTCTTAAG | + |
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Preference number: 6 (lower is better) Translates to: ERENNPFYFLTF*HKIAIVVTILK Trigger: CTTAAGAATAGTGACAACTATTGCTATTTTATGCAAGAAAGTCAGGAAATAAAAGGGATTGTTCTCCCTCTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000186062.3 ENSMUST00000227357.2 ENSMUST00000228428.2 |
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