Pregenerated sensors for VMN1R180 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092473Ensembl transcript IDs: ENSMUST00000173816.5
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAGGAGAAGATGTCCAGTGTGGATCCTGGTATCCTCCGTGGTCCTaGGACTTTAAACCTCCTAAGGCTCCTGAGTGTGAGCTGCTTTTT | + |
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Preference number: 1 (lower is better) Translates to: SGEDVQCGSWYPPWS*DFKPPKAPECELLF Trigger: AAAAAGCAGCTCACACTCAGGAGCCTTAGGAGGTTTAAAGTCTCAGGACCACGGAGGATACCAGGATCCACACTGGACATCTTCTCCTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CCA 90 bp | GTTCATATTGTTCCTCCTATGTGGATGCAAACCTGTTCAGCTCACTaGGTCCTTTCTCCAAATCCTTCATTGGGGACCCTGTGCTCAGTC | + |
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Preference number: 1 (lower is better) Translates to: VHIVPPMWMQTCSAH*VLSPNPSLGTLCSV Trigger: GACTGAGCACAGGGTCCCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCACATAGGAGGAACAATATGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR TCA 90 bp | GAAGCCATTGACAGCCAGAGTGACAACTTTGCCTCTACATTGTTCTaGTACCTCTTGTCTCCGGTCTTACTGGCAGGTGTTTCTGATGAC | + |
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Preference number: 1 (lower is better) Translates to: EAIDSQSDNFASTLF*YLLSPVLLAGVSDD Trigger: GTCATCAGAAACACCTGCCAGTAAGACCGGAGACAAGAGGTATCAGAACAATGTAGAGGCAAAGTTGTCACTCTGGCTGTCAATGGCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CCA 90 bp | ACTTTGCCTCTACATTGTTCTGATACCTCTTGTCTCCGGTCTTACTaGCAGGTGTTTCTGATGACTGTAAACACAATTTTACCACTGCCC | + |
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Preference number: 1 (lower is better) Translates to: TLPLHCSDTSCLRSY*QVFLMTVNTILPLP Trigger: GGGCAGTGGTAAAATTGTGTTTACAGTCATCAGAAACACCTGCCAGTAAGACCGGAGACAAGAGGTATCAGAACAATGTAGAGGCAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR GCA 90 bp | CAGGGAAAGTGGATTTCATCTGTTTTAGAGCATCCTGCAGCAGAGTaGAGTTATGTACAACAGAACAGAGGGTGGCAAATAACTCACTTA | + |
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Preference number: 1 (lower is better) Translates to: QGKWISSVLEHPAAE*SYVQQNRGWQITHL Trigger: TAAGTGAGTTATTTGCCACCCTCTGTTCTGTTGTACATAACTGCACTCTGCTGCAGGATGCTCTAAAACAGATGAAATCCACTTTCCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR GCA 90 bp | TTAACCTGTTCAGGGAAAGTGGATTTCATCTGTTTTAGAGCATCCTaGAGCAGAGTGCAGTTATGTACAACAGAACAGAGGGTGGCAAAT | + |
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Preference number: 1 (lower is better) Translates to: LTCSGKVDFICFRAS*SRVQLCTTEQRVAN Trigger: ATTTGCCACCCTCTGTTCTGTTGTACATAACTGCACTCTGCTGCAGGATGCTCTAAAACAGATGAAATCCACTTTCCCTGAACAGGTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR GCA 90 bp | GCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTaGAATTCCCTAATGACTAAGGATGTTGAACATTTCTTTAGATGC | + |
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Preference number: 1 (lower is better) Translates to: AILTGVRWNLRVVLI*NSLMTKDVEHFFRC Trigger: GCATCTAAAGAAATGTTCAACATCCTTAGTCATTAGGGAATTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CCA 90 bp | AGTTTCATGTGGTTTGTGGATTGTATCTTGGGTACTGCAACCTTCTaGGCTAATATCCACTTATCAGTGAGTGCATACTATGTGTGTTCT | + |
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Preference number: 1 (lower is better) Translates to: SFMWFVDCILGTATF*ANIHLSVSAYYVCS Trigger: AGAACACACATAGTATGCACTCACTGATAAGTGGATATTAGCCCAGAAGGTTGCAGTACCCAAGATACAATCCACAAACCACATGAAACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR GCA 90 bp | ATTTGCAATTCCCTAATGACTAAGGATGTTGAACATTTCTTTAGATaGTTCTCAGCCATTCAGCTTTCCTCAGTTGAGAATTCTTTGAAA | + |
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Preference number: 1 (lower is better) Translates to: ICNSLMTKDVEHFFR*FSAIQLSSVENSLK Trigger: TTTCAAAGAATTCTCAACTGAGGAAAGCTGAATGGCTGAGAAGCATCTAAAGAAATGTTCAACATCCTTAGTCATTAGGGAATTGCAAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CCA 90 bp | CCCTCTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTGGTGTTCCCTTACGCATTTGTCAGGCACTaGTGGAGGCTCTTTGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: PSAHHSTHNHFLALVFPYAFVRH*WRLFGD Trigger: GTCTCCAAAGAGCCTCCACCAGTGCCTGACAAATGC...GTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CCA 90 bp | CCCTCTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTGGTGTTCCCTTACCTCCAAATCCTTCATTaGGGACCCTGTGCTCAGTCC | + |
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Preference number: 2 (lower is better) Translates to: PSAHHSTHNHFLALVFPYLQILH*GPCAQS Trigger: GGACTGAGCACAGGGTCCCCAATGAAGGATTTGGAG...GTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CCA 90 bp | CCCTCTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTGGTGTTCCCTTACTGTCTCCGGTCTTACTaGCAGGTGTTTCTGATGACT | + |
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Preference number: 2 (lower is better) Translates to: PSAHHSTHNHFLALVFPYCLRSY*QVFLMT Trigger: AGTCATCAGAAACACCTGCCAGTAAGACCGGAGACA...GTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR TCA 90 bp | GTGGATGCAAACCTGTTCAGCTCACTGGGTCCTTTCTCCAAATCCTTCATTGGGTACCACTGCCCAGAGTaGAGACATTGCCAAGACCTT | + |
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Preference number: 2 (lower is better) Translates to: VDANLFSSLGPFSKSFIGYHCPE*RHCQDL Trigger: AAGGTCTTGGCAATGTCTTCACTCTGGGCAGTGGTA...CCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR TCA 90 bp | CCCTCTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTGGTGTTCCCTTACATGTGTGTTCTTTTGTaGTTGGGTTACCTCATTCAG | + |
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Preference number: 2 (lower is better) Translates to: PSAHHSTHNHFLALVFPYMCVLL*LGYLIQ Trigger: CTGAATGAGGTAACCCAATCACAAAAGAACACACAT...GTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR GCA 90 bp | CTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCAAATCTGTGTGCTCTGCTaGCTTTGGAATTTTCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: LSHSDWCEVESQGCFDLQICVLC*LWNFLA Trigger: TGCCAGAAAATTCCAAAGGCAGCAGAGCACACAGAT...TTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR TCA 90 bp | CTGATGACTGTAAACACAATTTTACCACTGCCCAGAGTGAAGACATTGCCAAGAGTGATGTTCAATGATTaGCTATCACCTGAGTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: LMTVNTILPLPRVKTLPRVMFND*LSPEWS Trigger: ACTCCACTCAGGTGATAGTCAATCATTGAACATCAC...TCTTGGCAATGTCTTCACTCTGGGCAGTGGTAAAATTGTGTTTACAGTCATCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR GCA 90 bp | AAAATAATTTTGCTACTGAGGAAGCCATTGACAGCCAGAGTGACAACTTTGCCTTGTTTTAGAGCATCCTaGAGCAGAGTGCAGTTATGT | + |
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Preference number: 2 (lower is better) Translates to: KIILLLRKPLTARVTTLPCFRAS*SRVQLC Trigger: ACATAACTGCACTCTGCTGCAGGATGCTCTAAAACA...AGGCAAAGTTGTCACTCTGGCTGTCAATGGCTTCCTCAGTAGCAAAATTATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CCA 90 bp | AAAATAATTTTGCTACTGAGGAAGCCATTGACAGCCAGAGTGACAACTTTGCCTCCTGTTCAGGGAAAGTaGATTTCATCTGTTTTAGAG | + |
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Preference number: 2 (lower is better) Translates to: KIILLLRKPLTARVTTLPPVQGK*ISSVLE Trigger: CTCTAAAACAGATGAAATCCACTTTCCCTGAACAGG...AGGCAAAGTTGTCACTCTGGCTGTCAATGGCTTCCTCAGTAGCAAAATTATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CAA 90 bp | ATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTaGATTTGCAATTCCCTAATGACTAAGGATGTTGAACATTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: ILAILTGVRWNLRVV*ICNSLMTKDVEHFF Trigger: AAAGAAATGTTCAACATCCTTAGTCATTAGGGAATTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CCA 72 bp | CTCCCTCTGCTCACCATTCTACCCACAACCACTTCCTaGCCCTGGTGTTCCCTTACACTGGGGCATAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: LPLLTILPTTTS*PWCSLTLGHRA Trigger: GGCTCTATGCCCCAGTGTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CCA 72 bp | CTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTaGTGTTCCCTTACACTGGGGCATAGAGCCTTTACA | + |
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Preference number: 3 (lower is better) Translates to: LLTILPTTTSWP*CSLTLGHRAFT Trigger: TGTAAAGGCTCTATGCCCCAGTGTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR TCA 72 bp | GATGTCCAGTGTGGATCCTGGTATCCTCCGTGGTCCTaGGACTTTAAACCTCCTAAGGCTCCTGAGTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: DVQCGSWYPPWS*DFKPPKAPECE Trigger: CTCACACTCAGGAGCCTTAGGAGGTTTAAAGTCTCAGGACCACGGAGGATACCAGGATCCACACTGGACATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR TCA 72 bp | TGCATATGTGATGGGTCCCCAGGTGGGGCAGTCTCTTaGTGGTCATTCCTTCAGTCTCTGCTCCACACTTTG | + |
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Preference number: 3 (lower is better) Translates to: CICDGSPGGAVS*WSFLQSLLHTL Trigger: CAAAGTGTGGAGCAGAGACTGAAGGAATGACCATCAAGAGACTGCCCCACCTGGGGACCCATCACATATGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CAA 90 bp | CCCTCTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTGGTGTTCCCTTACATCAGAAAGCACTTGTaGGCATCCACAAAAGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: PSAHHSTHNHFLALVFPYIRKHL*ASTKVL Trigger: CAGAACTTTTGTGGATGCCAACAAGTGCTTTCTGAT...GTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR GCA 72 bp | GTGGGGCAGTCTCTTGATGGTCATTCCTTCAGTCTCTaGTCCACACTTTGTCTCTGTAACTCCTTCCATGGG | + |
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Preference number: 3 (lower is better) Translates to: VGQSLDGHSFSL*STLCLCNSFHG Trigger: CCCATGGAAGGAGTTACAGAGACAAAGTGTGGAGCAGAGACTGAAGGAATGACCATCAAGAGACTGCCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CCA 72 bp | GTTCCTCCTATGTGGATGCAAACCTGTTCAGCTCACTaGGTCCTTTCTCCAAATCCTTCATTGGGGACCCTG | + |
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Preference number: 3 (lower is better) Translates to: VPPMWMQTCSAH*VLSPNPSLGTL Trigger: CAGGGTCCCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCACATAGGAGGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CAA 90 bp | GTGGATGCAAACCTGTTCAGCTCACTGGGTCCTTTCTCCAAATCCTTCATTGGGCTACTGAGGAAGCCATaGACAGCCAGAGTGACAACT | + |
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Preference number: 3 (lower is better) Translates to: VDANLFSSLGPFSKSFIGLLRKP*TARVTT Trigger: AGTTGTCACTCTGGCTGTCAATGGCTTCCTCAGTAG...CCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CAA 90 bp | GTGGATGCAAACCTGTTCAGCTCACTGGGTCCTTTCTCCAAATCCTTCATTGGGACTGGTGGAGGCTCTTaGGAGACAGCTATAACAGAA | + |
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Preference number: 3 (lower is better) Translates to: VDANLFSSLGPFSKSFIGTGGGS*ETAITE Trigger: TTCTGTTATAGCTGTCTCCAAAGAGCCTCCACCAGT...CCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR TCA 72 bp | GACAGCCAGAGTGACAACTTTGCCTCTACATTGTTCTaGTACCTCTTGTCTCCGGTCTTACTGGCAGGTGTT | + |
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Preference number: 3 (lower is better) Translates to: DSQSDNFASTLF*YLLSPVLLAGV Trigger: AACACCTGCCAGTAAGACCGGAGACAAGAGGTATCAGAACAATGTAGAGGCAAAGTTGTCACTCTGGCTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CAA 90 bp | GTGGATGCAAACCTGTTCAGCTCACTGGGTCCTTTCTCCAAATCCTTCATTGGGTCTATCAGAAAGCACTaGTTGGCATCCACAAAAGTT | + |
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Preference number: 3 (lower is better) Translates to: VDANLFSSLGPFSKSFIGSIRKH*LASTKV Trigger: AACTTTTGTGGATGCCAACAAGTGCTTTCTGATAGA...CCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR-3UTR CAA 90 bp | CTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCAAGCCAGAGTGACAACTTaGCCTCTACATTGTTCTGAT | + |
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Preference number: 3 (lower is better) Translates to: LSHSDWCEVESQGCFDLQARVTT*PLHCSD Trigger: ATCAGAACAATGTAGAGGCAAAGTTGTCACTCTGGC...TTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR GCA 72 bp | ACTGACAGGTATAACCTCTCCAGATCCTTATCTGTGTaGTCTGCTGCCTTTGGAATTTTCTGGCAGCAAAAA | + |
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Preference number: 3 (lower is better) Translates to: TDRYNLSRSLSV*SAAFGIFWQQK Trigger: TTTTTGCTGCCAGAAAATTCCAAAGGCAGCAGAGCACACAGATAAGGATCTGGAGAGGTTATACCTGTCAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CCA 72 bp | GCAGCAGAGTGCAGTTATGTACAACAGAACAGAGGGTaGCAAATAACTCACTTACTGTCAGTCATATTCCAA | + |
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Preference number: 3 (lower is better) Translates to: AAECSYVQQNRG*QITHLLSVIFQ Trigger: TTGGAATATGACTGACAGTAAGTGAGTTATTTGCCACCCTCTGTTCTGTTGTACATAACTGCACTCTGCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR TCA 90 bp | CCCTCTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTGGTGTTCCCTTACCAGAGCAAGAGGATCTaGAGAGCCACTTCTTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: PSAHHSTHNHFLALVFPYQSKRI*RATSSV Trigger: CACTGAAGAAGTGGCTCTTCAGATCCTCTTGCTCTG...GTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR GCA 90 bp | CCCTCTGCTCACCATTCTACCCACAACCACTTCCTGGCCCTGGTGTTCCCTTACCAACAAAAACTTCACTaGAATGCCTCACAAAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: PSAHHSTHNHFLALVFPYQQKLH*NASQRD Trigger: ATCTCTTTGTGAGGCATTGCAGTGAAGTTTTTGTTG...GTAAGGGAACACCAGGGCCAGGAAGTGGTTGTGGGTAGAATGGTGAGCAGAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CAA 72 bp | AGCTGCTGGAGTTATGAGTCCCTCCATGTGTACTCTTaGGTTGGTGATGTAGTTCCTGGGAACTCTGGGAAT | + |
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Preference number: 4 (lower is better) Translates to: SCWSYESLHVYS*VGDVVPGNSGN Trigger: ATTCCCAGAGTTCCCAGGAACTACATCACCAACCAAAGAGTACACATGGAGGGACTCATAACTCCAGCAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR GCA 90 bp | GTGGATGCAAACCTGTTCAGCTCACTGGGTCCTTTCTCCAAATCCTTCATTGGGTATTGTGGGGAAGCCTaGAACAAAAACTTCACTGCA | + |
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Preference number: 4 (lower is better) Translates to: VDANLFSSLGPFSKSFIGYCGEA*NKNFTA Trigger: TGCAGTGAAGTTTTTGTTGCAGGCTTCCCCACAATA...CCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR CCA 90 bp | AGAGCATCCTGCAGCAGAGTGCAGTTATGTACAACAGAACAGAGGGTGGCAAATTTAAAATCACCTGTCTaGGCCTCTGTTGAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: RASCSRVQLCTTEQRVANLKSPV*ASVENQ Trigger: CTGGTTCTCAACAGAGGCCCAGACAGGTGATTTTAA...ATTTGCCACCCTCTGTTCTGTTGTACATAACTGCACTCTGCTGCAGGATGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR CCA 90 bp | GTGGATGCAAACCTGTTCAGCTCACTGGGTCCTTTCTCCAAATCCTTCATTGGGAGAGAATCAAGATATTaGCCACAGCCATGTGGCTTA | + |
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Preference number: 4 (lower is better) Translates to: VDANLFSSLGPFSKSFIGRESRY*PQPCGL Trigger: TAAGCCACATGGCTGTGGCCAATATCTTGATTCTCT...CCCAATGAAGGATTTGGAGAAAGGACCCAGTGAGCTGAACAGGTTTGCATCCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CAA 72 bp | GTAAACACAATTTTACCACTGCCCAGAGTGAAGACATaGCCAAGACCTTTCAGGAGAAGATGTCCAGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: VNTILPLPRVKT*PRPFRRRCPVW Trigger: CCACACTGGACATCTTCTCCTGAAAGGTCTTGGCAATGTCTTCACTCTGGGCAGTGGTAAAATTGTGTTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR TCA 90 bp | CAGAGGGTGGCAAATAACTCACTTACTGTCAGTCATATTCCAACCAGAAATCATTGCTGCATTTGCTGTTaGTGTCTACGGAGGAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: QRVANNSLTVSHIPTRNHCCICC*CLRRRS Trigger: ACTTCTCCTCCGTAGACATCAACAGCAAATGCAGCA...ATGATTTCTGGTTGGAATATGACTGACAGTAAGTGAGTTATTTGCCACCCTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR GCA 90 bp | CTGATGACTGTAAACACAATTTTACCACTGCCCAGAGTGAAGACATTGCCAAGACAAGTTTGTGCTTCTTaGCACCAGGCGAATAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: LMTVNTILPLPRVKTLPRQVCAS*HQANKE Trigger: TTCTTTATTCGCCTGGTGGCAAGAAGCACAAACTTG...TCTTGGCAATGTCTTCACTCTGGGCAGTGGTAAAATTGTGTTTACAGTCATCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR TCA 90 bp | CTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCAAGCCATCATGTTGTTTTaGAATGTAGTGATGAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: LSHSDWCEVESQGCFDLQAIMLF*NVVMKR Trigger: TCTCTTCATCACTACATTTCAAAACAACATGATGGC...TTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR GCA 90 bp | CTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCAAGTAACAAGAATAACTTaGCAAATTTGGGACACTTGC | + |
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Preference number: 4 (lower is better) Translates to: LSHSDWCEVESQGCFDLQVTRIT*QIWDTC Trigger: GCAAGTGTCCCAAATTTGGCAAGTTATTCTTGTTAC...TTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CAA 72 bp | ATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTaGATTTGCAATTCCCTAATGACTAAGGATGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: ILTGVRWNLRVV*ICNSLMTKDVE Trigger: TTCAACATCCTTAGTCATTAGGGAATTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CAA 72 bp | TTCTTCTTGAGTTTCATGTGGTTTGTGGATTGTATCTaGGGTACTGCAACCTTCTGGGCTAATATCCACTTA | + |
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Preference number: 4 (lower is better) Translates to: FFLSFMWFVDCI*GTATFWANIHL Trigger: TAAGTGGATATTAGCCCAGAAGGTTGCAGTACCCAAGATACAATCCACAAACCACATGAAACTCAAGAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| 3UTR CAA 72 bp | TATTTCTTTGTTCACAGAATTAGCACAAGTGTGATTTaGAGTTTCATCACACTGACAGGTATAACCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: YFFVHRISTSVI*SFITLTGITSP Trigger: TGGAGAGGTTATACCTGTCAGTGTGATGAAACTCAAAATCACACTTGTGCTAATTCTGTGAACAAAGAAATA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS TCA 90 bp | GGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCATCCTGATTGGGAGTaGGGATGTGCTGCATTTGCTGTTGATGTCTACGGAGGAGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: GLLWSQLGLWHPDWE*GCAAFAVDVYGGEV Trigger: TACTTCTCCTCCGTAGACATCAACAGCAAATGCAGCACATCCTCACTCCCAATCAGGATGCCAGAGGCCAAGCTGAGACCAGAGCAACCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR CAA 90 bp | TTTCAGGAGAAGATGTCCAGTGTGGATCCTGGTATCCTCCGTGGTCCTGAGACTCTGTCTGGGCCTCTGTaGAGAACCAGTCAAGACTGG | + |
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Preference number: 5 (lower is better) Translates to: FQEKMSSVDPGILRGPETLSGPL*RTSQDW Trigger: CCAGTCTTGACTGGTTCTCAACAGAGGCCCAGACAG...AGTCTCAGGACCACGGAGGATACCAGGATCCACACTGGACATCTTCTCCTGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS CCA 90 bp | ATGGAGACACTGGTCCAGACCATGATGCTCATGAATGTGGCATCATaGGCAAATCGCAAGAAGACAATGCCTACACTGAATCCAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: METLVQTMMLMNVAS*ANRKKTMPTLNPEV Trigger: CACTTCTGGATTCAGTGTAGGCATTGTCTTCTTGCGATTTGCCCATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR CAA 90 bp | CTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCAAGAGGATGTGCTGCATTaGCTGTTGATGTCTACGGAG | + |
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Preference number: 5 (lower is better) Translates to: LSHSDWCEVESQGCFDLQEDVLH*LLMSTE Trigger: CTCCGTAGACATCAACAGCAAATGCAGCACATCCTC...TTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS CCA 90 bp | AACCAGTCAAGACTGGATAGAAATTATGGACAAACAGAAAGACATTaGCCACAGTCCCAACCCCAAACTGGCAGAGCAAGAGGATCTGAA | + |
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Preference number: 5 (lower is better) Translates to: NQSRLDRNYGQTERH*PQSQPQTGRARGSE Trigger: TTCAGATCCTCTTGCTCTGCCAGTTTGGGGTTGGGACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTATCCAGTCTTGACTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR CAA 90 bp | AGAGCATCCTGCAGCAGAGTGCAGTTATGTACAACAGAACAGAGGGTGGCAAATCAGTTGGAGGATTTTTaGAAGCAAAAGCCATCATGT | + |
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Preference number: 5 (lower is better) Translates to: RASCSRVQLCTTEQRVANQLEDF*KQKPSC Trigger: ACATGATGGCTTTTGCTTCAAAAAATCCTCCAACTG...ATTTGCCACCCTCTGTTCTGTTGTACATAACTGCACTCTGCTGCAGGATGCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR CAA 90 bp | AAAATAATTTTGCTACTGAGGAAGCCATTGACAGCCAGAGTGACAACTTTGCCTGTGCTGCATTTGCTGTaGATGTCTACGGAGGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: KIILLLRKPLTARVTTLPVLHLL*MSTEEK Trigger: CTTCTCCTCCGTAGACATCAACAGCAAATGCAGCAC...AGGCAAAGTTGTCACTCTGGCTGTCAATGGCTTCCTCAGTAGCAAAATTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS GCA 90 bp | CTGATGGATACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTTaGCACCAGGCGAATAAAGAATTCCAATTTACATTTGAGGTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LMDTQDTGGTQVCAS*HQANKEFQFTFEVS Trigger: ACTGACCTCAAATGTAAATTGGAATTCTTTATTCGCCTGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS-3UTR CAA 90 bp | AGAGCATCCTGCAGCAGAGTGCAGTTATGTACAACAGAACAGAGGGTGGCAAATAGCCATCATGTTGTTTaGAAATGTAGTGATGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: RASCSRVQLCTTEQRVANSHHVV*KCSDEE Trigger: CTCTTCATCACTACATTTCAAAACAACATGATGGCT...ATTTGCCACCCTCTGTTCTGTTGTACATAACTGCACTCTGCTGCAGGATGCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS TCA 90 bp | CTGAGTATGAGTTTACCTCTATTAACAGGAACAAGAGTGACAAACTaGTGGATACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: LSMSLPLLTGTRVTN*WILRTQVEHKFVLL Trigger: AAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCACTCTTGTTCCTGTTAATAGAGGTAAACTCATACTCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS CAA 90 bp | GCCTCTGGCATCCTGATTGGGAGTGAGGATGTGCTGCATTTGCTGTaGATGTCTACGGAGGAGAAGTACCATGGAGACACTGGTCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: ASGILIGSEDVLHLL*MSTEEKYHGDTGPD Trigger: GTCTGGACCAGTGTCTCCATGGTACTTCTCCTCCGTAGACATCAACAGCAAATGCAGCACATCCTCACTCCCAATCAGGATGCCAGAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS TCA 72 bp | TGGTCTCAGCTTGGCCTCTGGCATCCTGATTGGGAGTaGGGATGTGCTGCATTTGCTGTTGATGTCTACGGA | + |
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Preference number: 6 (lower is better) Translates to: WSQLGLWHPDWE*GCAAFAVDVYG Trigger: TCCGTAGACATCAACAGCAAATGCAGCACATCCTCACTCCCAATCAGGATGCCAGAGGCCAAGCTGAGACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS CAA 90 bp | TGTGACAACCAGCATCAGGATAGTATGGGTTGCTCTGGTCTCAGCTaGGCCTCTGGCATCCTGATTGGGAGTGAGGATGTGCTGCATTTG | + |
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Preference number: 6 (lower is better) Translates to: CDNQHQDSMGCSGLS*ASGILIGSEDVLHL Trigger: CAAATGCAGCACATCCTCACTCCCAATCAGGATGCCAGAGGCCAAGCTGAGACCAGAGCAACCCATACTATCCTGATGCTGGTTGTCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS CCA 72 bp | TATTGGCCACAGCCATGTGGCTTAAAATCACCTGTCTaGGCCTCTGTTGAGAACCAGTCAAGACTGGATAGA | + |
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Preference number: 6 (lower is better) Translates to: YWPQPCGLKSPV*ASVENQSRLDR Trigger: TCTATCCAGTCTTGACTGGTTCTCAACAGAGGCCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS GCA 72 bp | ACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTTaGCACCAGGCGAATAAAGAATTCCAATTTACATTT | + |
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Preference number: 6 (lower is better) Translates to: TQDTGGTQVCAS*HQANKEFQFTF Trigger: AAATGTAAATTGGAATTCTTTATTCGCCTGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS TCA 72 bp | AGTTTACCTCTATTAACAGGAACAAGAGTGACAAACTaGTGGATACTCAGGACACAGGTGGAACACAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: SLPLLTGTRVTN*WILRTQVEHKF Trigger: AAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCACTCTTGTTCCTGTTAATAGAGGTAAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS GCA 72 bp | GAGATATTGTGGGGAAGCCTGCAACAAAAACTTCACTaGAATGCCTCACAAAGAGATAAGAATCTACAAAAA | + |
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Preference number: 6 (lower is better) Translates to: EILWGSLQQKLH*NASQRDKNLQK Trigger: TTTTTGTAGATTCTTATCTCTTTGTGAGGCATTGCAGTGAAGTTTTTGTTGCAGGCTTCCCCACAATATCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS CAA 90 bp | AAGAAGACAATGCCTACACTGAATCCAGAAGTGGAACAAAACAACTaGCTTTTAGAGTCATTATTATTGTCTGTTATCTGTGGACCAGTG | + |
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Preference number: 6 (lower is better) Translates to: KKTMPTLNPEVEQNN*LLESLLLSVICGPV Trigger: CACTGGTCCACAGATAACAGACAATAATAATGACTCTAAAAGCAAGTTGTTTTGTTCCACTTCTGGATTCAGTGTAGGCATTGTCTTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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| CDS CAA 72 bp | ATGCCTACACTGAATCCAGAAGTGGAACAAAACAACTaGCTTTTAGAGTCATTATTATTGTCTGTTATCTGT | + |
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Preference number: 6 (lower is better) Translates to: MPTLNPEVEQNN*LLESLLLSVIC Trigger: ACAGATAACAGACAATAATAATGACTCTAAAAGCAAGTTGTTTTGTTCCACTTCTGGATTCAGTGTAGGCAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173816.5 |
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