Pregenerated sensors for VMN1R178 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062598Ensembl transcript IDs: ENSMUST00000078593.3, ENSMUST00000226450.2, ENSMUST00000226489.2, ENSMUST00000226640.2, ENSMUST00000227993.2
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTAGAACATGTCCAGTTTaGATCCTGGTATCCTCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: SFITLTALTTPDFYLVGPRTCPV*ILVSSL Trigger: CAGGGAGGATACCAGGATCCAAACTGGACATGTTCT...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CCA 90 bp | GGAGTTACTGATGATTGGAAAAGCAATGCTACCATGACCCAGAGTGAAGATTTTAGAACATGTCCAGTTTaGATCCTGGTATCCTCCCTG | + |
|
Preference number: 2 (lower is better) Translates to: GVTDDWKSNATMTQSEDFRTCPV*ILVSSL Trigger: CAGGGAGGATACCAGGATCCAAACTGGACATGTTCT...AAAATCTTCACTCTGGGTCATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTTTTCCTCTTTACTTTTaGTGTAGTGTGCAGTTTGCC | + |
|
Preference number: 2 (lower is better) Translates to: NMSSLDPGILPGAENLNLFPLYF*CSVQFA Trigger: GGCAAACTGCACACTACATCAAAAGTAAAGAGGAAA...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGTACCATGACCCAGAGTaGAGATTTTGTCAAGGTCTT | + |
|
Preference number: 2 (lower is better) Translates to: PPHCTDISCLLSDYQELLYHDPE*RFCQGL Trigger: AAGACCTTGACAAAATCTTCACTCTGGGTCATGGTA...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTCATCTACAGAAAGAGTaGCAACTTTGCCTCCTCATT | + |
|
Preference number: 2 (lower is better) Translates to: SFITLTALTTPDFYLVGPHLQKE*QLCLLI Trigger: AATGAGGAGGCAAAGTTGTCACTCTTTCTGTAGATG...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTTATCCTCCCTGGTGCTaGGAATTTAAACCTTTTATG | + |
|
Preference number: 2 (lower is better) Translates to: SFITLTALTTPDFYLVGPYPPWC*EFKPFM Trigger: CATAAAAGGTTTAAATTCTCAGCACCAGGGAGGATA...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR GCA 90 bp | GGAGTTACTGATGATTGGAAAAGCAATGCTACCATGACCCAGAGTGAAGATTTTGAGCATGAGCCGTTTTaGCTCTTTTCCTCTTTACTT | + |
|
Preference number: 2 (lower is better) Translates to: GVTDDWKSNATMTQSEDFEHEPF*LFSSLL Trigger: AAGTAAAGAGGAAAAGAGGCAAAACGGCTCATGCTC...AAAATCTTCACTCTGGGTCATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CCA 90 bp | GGAGTTACTGATGATTGGAAAAGCAATGCTACCATGACCCAGAGTGAAGATTTTGCAGTCTTCTGTGTTTaGTGTTTTAGCAACTCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: GVTDDWKSNATMTQSEDFAVFCV*CFSNSG Trigger: ACCAGAGTTGCTAAAACACCAAACACAGAAGACTGC...AAAATCTTCACTCTGGGTCATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTGGAGTTACTGATGATTaGAAAAGCAATGCTACCATG | + |
|
Preference number: 2 (lower is better) Translates to: SFITLTALTTPDFYLVGPGVTDD*KSNATM Trigger: CATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR GCA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGACTTTTGATGTAGTGTaGAGTTTGCCTTGTTCAAGT | + |
|
Preference number: 2 (lower is better) Translates to: PPHCTDISCLLSDYQELLTFDVV*SLPCSS Trigger: ACTTGAACAAGGCAAACTGCACACTACATCAAAAGT...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | AGGAGTAAATACCACAACTCAGATTTTGAGTTTCATCACACTAACAGCTCTAACAAAGCAATGCTACCATaGCCCAGAGTGAAGATTTTG | + |
|
Preference number: 2 (lower is better) Translates to: RSKYHNSDFEFHHTNSSNKAMLP*PRVKIL Trigger: CAAAATCTTCACTCTGGGTCATGGTAGCATTGCTTT...GTTAGAGCTGTTAGTGTGATGAAACTCAAAATCTGAGTTGTGGTATTTACTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | AGGAGTAAATACCACAACTCAGATTTTGAGTTTCATCACACTAACAGCTCTAACCATCTACAGAAAGAGTaGCAACTTTGCCTCCTCATT | + |
|
Preference number: 2 (lower is better) Translates to: RSKYHNSDFEFHHTNSSNHLQKE*QLCLLI Trigger: AATGAGGAGGCAAAGTTGTCACTCTTTCTGTAGATG...GTTAGAGCTGTTAGTGTGATGAAACTCAAAATCTGAGTTGTGGTATTTACTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR GCA 90 bp | GGAGTTACTGATGATTGGAAAAGCAATGCTACCATGACCCAGAGTGAAGATTTTACTTTTGATGTAGTGTaGAGTTTGCCTTGTTCAAGT | + |
|
Preference number: 2 (lower is better) Translates to: GVTDDWKSNATMTQSEDFTFDVV*SLPCSS Trigger: ACTTGAACAAGGCAAACTGCACACTACATCAAAAGT...AAAATCTTCACTCTGGGTCATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CCA 90 bp | ACAAAGTTATATTGTTCAATGCTTAACCCTCACCAGAGTAGAGTCAAAGATTGCGCAGTCTTCTGTGTTTaGTGTTTTAGCAACTCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: TKLYCSMLNPHQSRVKDCAVFCV*CFSNSG Trigger: ACCAGAGTTGCTAAAACACCAAACACAGAAGACTGC...GCAATCTTTGACTCTACTCTGGTGAGGGTTAAGCATTGAACAATATAACTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | AGGAGTAAATACCACAACTCAGATTTTGAGTTTCATCACACTAACAGCTCTAACTTTCCTCTTTACTTTTaGTGTAGTGTGCAGTTTGCC | + |
|
Preference number: 2 (lower is better) Translates to: RSKYHNSDFEFHHTNSSNFPLYF*CSVQFA Trigger: GGCAAACTGCACACTACATCAAAAGTAAAGAGGAAA...GTTAGAGCTGTTAGTGTGATGAAACTCAAAATCTGAGTTGTGGTATTTACTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | AGGAGTAAATACCACAACTCAGATTTTGAGTTTCATCACACTAACAGCTCTAACTATCCTCCCTGGTGCTaGGAATTTAAACCTTTTATG | + |
|
Preference number: 2 (lower is better) Translates to: RSKYHNSDFEFHHTNSSNYPPWC*EFKPFM Trigger: CATAAAAGGTTTAAATTCTCAGCACCAGGGAGGATA...GTTAGAGCTGTTAGTGTGATGAAACTCAAAATCTGAGTTGTGGTATTTACTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR GCA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCGAGCATGAGCCGTTTTaGCTCTTTTCCTCTTTACTT | + |
|
Preference number: 2 (lower is better) Translates to: ENIIVFREAIYRKSDNFAEHEPF*LFSSLL Trigger: AAGTAAAGAGGAAAAGAGGCAAAACGGCTCATGCTC...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CCA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCGCAGTCTTCTGTGTTTaGTGTTTTAGCAACTCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: ENIIVFREAIYRKSDNFAAVFCV*CFSNSG Trigger: ACCAGAGTTGCTAAAACACCAAACACAGAAGACTGC...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR CAA 90 bp | ATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTaGCCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTAT | + |
|
Preference number: 2 (lower is better) Translates to: ILLCLEKPSTERVTT*PPHCTDISCLLSDY Trigger: ATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCTATCCTCCCTGGTGCTaGGAATTTAAACCTTTTATG | + |
|
Preference number: 2 (lower is better) Translates to: ENIIVFREAIYRKSDNFAYPPWC*EFKPFM Trigger: CATAAAAGGTTTAAATTCTCAGCACCAGGGAGGATA...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR TCA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCCTCTTGTCTTCTGTCTaGTTATCAGGAGTTACTGAT | + |
|
Preference number: 2 (lower is better) Translates to: ENIIVFREAIYRKSDNFALLSSV*LSGVTD Trigger: ATCAGTAACTCCTGATAATCAGACAGAAGACAAGAG...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CCA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCGGAGTTACTGATGATTaGAAAAGCAATGCTACCATG | + |
|
Preference number: 2 (lower is better) Translates to: ENIIVFREAIYRKSDNFAGVTDD*KSNATM Trigger: CATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR GCA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCACTTTTGATGTAGTGTaGAGTTTGCCTTGTTCAAGT | + |
|
Preference number: 2 (lower is better) Translates to: ENIIVFREAIYRKSDNFATFDVV*SLPCSS Trigger: ACTTGAACAAGGCAAACTGCACACTACATCAAAAGT...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR TCA 72 bp | CATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTaGGAATTTAAACCTTTTATGGCTGAGGAGCATGAG | + |
|
Preference number: 3 (lower is better) Translates to: HVQFGSWYPPWC*EFKPFMAEEHE Trigger: CTCATGCTCCTCAGCCATAAAAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CAA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTGAGCACCTTGCCTTGTaGATGCAAAAGATGTTGAAC | + |
|
Preference number: 3 (lower is better) Translates to: NMSSLDPGILPGAENLNLEHLAL*MQKMLN Trigger: GTTCAACATCTTTTGCATCAACAAGGCAAGGTGCTC...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CAA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTGAGCACCTTGCCTTGTaGATGCAAAAGATGTTGAAC | + |
|
Preference number: 3 (lower is better) Translates to: SFITLTALTTPDFYLVGPEHLAL*MQKMLN Trigger: GTTCAACATCTTTTGCATCAACAAGGCAAGGTGCTC...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CAA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGGAGCACCTTGCCTTGTaGATGCAAAAGATGTTGAAC | + |
|
Preference number: 3 (lower is better) Translates to: PPHCTDISCLLSDYQELLEHLAL*MQKMLN Trigger: GTTCAACATCTTTTGCATCAACAAGGCAAGGTGCTC...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CAA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTGAAAGAGTGACAACTTaGCCTCCTCATTGTACTGAC | + |
|
Preference number: 3 (lower is better) Translates to: SFITLTALTTPDFYLVGPERVTT*PPHCTD Trigger: GTCAGTACAATGAGGAGGCAAAGTTGTCACTCTTTC...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR TCA 72 bp | CAGGAGTTACTGATGATTGGAAAAGCAATGCTACCATaGCCCAGAGTGAAGATTTTGTCAAGGTCTTTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: QELLMIGKAMLP*PRVKILSRSFR Trigger: CCTGAAAGACCTTGACAAAATCTTCACTCTGGGTCATGGTAGCATTGCTTTTCCAATCATCAGTAACTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CAA 90 bp | GGAGTTACTGATGATTGGAAAAGCAATGCTACCATGACCCAGAGTGAAGATTTTGAGCACCTTGCCTTGTaGATGCAAAAGATGTTGAAC | + |
|
Preference number: 3 (lower is better) Translates to: GVTDDWKSNATMTQSEDFEHLAL*MQKMLN Trigger: GTTCAACATCTTTTGCATCAACAAGGCAAGGTGCTC...AAAATCTTCACTCTGGGTCATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| 3UTR-3UTR CAA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGATTGAGCACCTTGCCTaGTTGATGCAAAAGATGTTG | + |
|
Preference number: 3 (lower is better) Translates to: PPHCTDISCLLSDYQELLIEHLA*LMQKML Trigger: CAACATCTTTTGCATCAACAAGGCAAGGTGCTCAAT...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR TCA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTCAAAGCAGGAGGATTTaGAGAGTCATGTCATCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: NMSSLDPGILPGAENLNLQSRRI*RVMSSV Trigger: CACTGATGACATGACTCTTCAAATCCTCCTGCTTTG...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTGAAACAGAAAGACATTaGCCACAGTCCCAACCACAA | + |
|
Preference number: 4 (lower is better) Translates to: NMSSLDPGILPGAENLNLETERH*PQSQPQ Trigger: TTGTGGTTGGGACTGTGGCCAATGTCTTTCTGTTTC...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTAGAGAATCAAGGCATTaGCCACAGACATGTGGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: NMSSLDPGILPGAENLNLRESRH*PQTCGL Trigger: TAAGCCACATGTCTGTGGCCAATGCCTTGATTCTCT...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| 3UTR CAA 72 bp | GATTTTGTCAAGGTCTTTCAGGAGAACATGTCCAGTTaGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTA | + |
|
Preference number: 4 (lower is better) Translates to: DFVKVFQENMSS*DPGILPGAENL Trigger: TAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTTCTCCTGAAAGACCTTGACAAAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGCATGTTTGTGCTTCTTaGCACCAGGCGACTAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: PPHCTDISCLLSDYQELLHVCAS*HQATKV Trigger: TACTTTAGTCGCCTGGTGGCAAGAAGCACAAACATG...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTCATGTTTGTGCTTCTTaGCACCAGGCGACTAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: SFITLTALTTPDFYLVGPHVCAS*HQATKV Trigger: TACTTTAGTCGCCTGGTGGCAAGAAGCACAAACATG...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTGAAACAGAAAGACATTaGCCACAGTCCCAACCACAA | + |
|
Preference number: 4 (lower is better) Translates to: SFITLTALTTPDFYLVGPETERH*PQSQPQ Trigger: TTGTGGTTGGGACTGTGGCCAATGTCTTTCTGTTTC...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGAGAGAATCAAGGCATTaGCCACAGACATGTGGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: PPHCTDISCLLSDYQELLRESRH*PQTCGL Trigger: TAAGCCACATGTCTGTGGCCAATGCCTTGATTCTCT...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR TCA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTCATCATGTCTGGAAATaGAGTGAGGAAGAGAATCAA | + |
|
Preference number: 4 (lower is better) Translates to: NMSSLDPGILPGAENLNLHHVWK*SEEENQ Trigger: TTGATTCTCTTCCTCACTTCATTTCCAGACATGATG...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTCAAGTTTGGGACACTTaGTCTGAGTATAGCTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: SFITLTALTTPDFYLVGPQVWDT*SEYSFT Trigger: GGTAAAGCTATACTCAGAGCAAGTGTCCCAAACTTG...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTAGTTGGAGAATTTCTTaGAGCAAAAGCCATCATGTC | + |
|
Preference number: 4 (lower is better) Translates to: NMSSLDPGILPGAENLNLSWRIS*SKSHHV Trigger: GACATGATGGCTTTTGCTCCAAGAAATTCTCCAACT...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| 3UTR CAA 72 bp | TGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTaGCCTCCTCATTGTACTGACATCTCTTGTCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: CLEKPSTERVTT*PPHCTDISCLL Trigger: CAGAAGACAAGAGATGTCAGTACAATGAGGAGGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR TCA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGCATCATGTCTGGAAATaGAGTGAGGAAGAGAATCAA | + |
|
Preference number: 4 (lower is better) Translates to: PPHCTDISCLLSDYQELLHHVWK*SEEENQ Trigger: TTGATTCTCTTCCTCACTTCATTTCCAGACATGATG...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGGATAGTGGGGAATCCTaGAGCAAAAACTTTACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: PPHCTDISCLLSDYQELLDSGES*SKNFTE Trigger: TTCAGTAAAGTTTTTGCTGCAGGATTCCCCACTATC...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTGATAGTGGGGAATCCTaGAGCAAAAACTTTACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SFITLTALTTPDFYLVGPDSGES*SKNFTE Trigger: TTCAGTAAAGTTTTTGCTGCAGGATTCCCCACTATC...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | ACAAAGTTATATTGTTCAATGCTTAACCCTCACCAGAGTAGAGTCAAAGATTGCCATGTTTGTGCTTCTTaGCACCAGGCGACTAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: TKLYCSMLNPHQSRVKDCHVCAS*HQATKV Trigger: TACTTTAGTCGCCTGGTGGCAAGAAGCACAAACATG...GCAATCTTTGACTCTACTCTGGTGAGGGTTAAGCATTGAACAATATAACTTTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | GGAGTTACTGATGATTGGAAAAGCAATGCTACCATGACCCAGAGTGAAGATTTTGATAGTGGGGAATCCTaGAGCAAAAACTTTACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: GVTDDWKSNATMTQSEDFDSGES*SKNFTE Trigger: TTCAGTAAAGTTTTTGCTGCAGGATTCCCCACTATC...AAAATCTTCACTCTGGGTCATGGTAGCATTGCTTTTCCAATCATCAGTAACTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | AGTTTCATCACACTAACAGCTCTAACCACTCCAGATTTTTATCTTGTGGGCCCTGAGTCATGTCATCAGTaGTTTTCAGAGATTTATCAT | + |
|
Preference number: 4 (lower is better) Translates to: SFITLTALTTPDFYLVGPESCHQ*FSEIYH Trigger: ATGATAAATCTCTGAAAACCACTGATGACATGACTC...AGGGCCCACAAGATAAAAATCTGGAGTGGTTAGAGCTGTTAGTGTGATGAAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | AGGAGTAAATACCACAACTCAGATTTTGAGTTTCATCACACTAACAGCTCTAACTTGGCCACAGACATGTaGCTTAAAATCAACTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: RSKYHNSDFEFHHTNSSNLATDM*LKINCL Trigger: CAGACAGTTGATTTTAAGCCACATGTCTGTGGCCAA...GTTAGAGCTGTTAGTGTGATGAAACTCAAAATCTGAGTTGTGGTATTTACTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCCAAGTTTGGGACACTTaGTCTGAGTATAGCTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: ENIIVFREAIYRKSDNFAQVWDT*SEYSFT Trigger: GGTAAAGCTATACTCAGAGCAAGTGTCCCAAACTTG...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR GCA 90 bp | GCCAGTAAGACACTAACCAGAGGTATTTCACACCAACAAATGATTATAACCTTAGATAGTGGGGAATCCTaGAGCAAAAACTTTACTGAA | + |
|
Preference number: 4 (lower is better) Translates to: ASKTLTRGISHQQMIITLDSGES*SKNFTE Trigger: TTCAGTAAAGTTTTTGCTGCAGGATTCCCCACTATC...TAAGGTTATAATCATTTGTTGGTGTGAAATACCTCTGGTTAGTGTCTTACTGGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | GCCAGTAAGACACTAACCAGAGGTATTTCACACCAACAAATGATTATAACCTTAAGTTGGAGAATTTCTTaGAGCAAAAGCCATCATGTC | + |
|
Preference number: 4 (lower is better) Translates to: ASKTLTRGISHQQMIITLSWRIS*SKSHHV Trigger: GACATGATGGCTTTTGCTCCAAGAAATTCTCCAACT...TAAGGTTATAATCATTTGTTGGTGTGAAATACCTCTGGTTAGTGTCTTACTGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CCA 90 bp | GCCAGTAAGACACTAACCAGAGGTATTTCACACCAACAAATGATTATAACCTTAGAGTCATGTCATCAGTaGTTTTCAGAGATTTATCAT | + |
|
Preference number: 4 (lower is better) Translates to: ASKTLTRGISHQQMIITLESCHQ*FSEIYH Trigger: ATGATAAATCTCTGAAAACCACTGATGACATGACTC...TAAGGTTATAATCATTTGTTGGTGTGAAATACCTCTGGTTAGTGTCTTACTGGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| 3UTR CAA 72 bp | AGCATTGAGCACCTTGCCTTGTTGATGCAAAAGATGTaGAACACACATTTATGGAATGAAGTATTTAATGGT | + |
|
Preference number: 4 (lower is better) Translates to: SIEHLALLMQKM*NTHLWNEVFNG Trigger: ACCATTAAATACTTCATTCCATAAATGTGTGTTCAACATCTTTTGCATCAACAAGGCAAGGTGCTCAATGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS CCA 90 bp | TGTCTGGGCCTCTGTTTAGAACCAGTCAAGACTGGAGAGATATTATaGAGAAACAGAAAGACATTGGCCACAGTCCCAACCACAAACTGG | + |
|
Preference number: 5 (lower is better) Translates to: CLGLCLEPVKTGEIL*RNRKTLATVPTTNW Trigger: CCAGTTTGTGGTTGGGACTGTGGCCAATGTCTTTCTGTTTCTCCATAATATCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCCAGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS CCA 90 bp | GGAAATGAAGTGAGGAAGAGAATCAAGGCATTGGCCACAGACATGTaGCTTAAAATCAACTGTCTGGGCCTCTGTTTAGAACCAGTCAAG | + |
|
Preference number: 5 (lower is better) Translates to: GNEVRKRIKALATDM*LKINCLGLCLEPVK Trigger: CTTGACTGGTTCTAAACAGAGGCCCAGACAGTTGATTTTAAGCCACATGTCTGTGGCCAATGCCTTGATTCTCTTCCTCACTTCATTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS CCA 90 bp | ATGGAGACACTGGTCCAGACCATGATGCTCATGAATGTGCCATCATaGAAAATCCGCAAGAAGAAAATGCCTACACTGAATCCAGAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: METLVQTMMLMNVPS*KIRKKKMPTLNPEV Trigger: CACTTCTGGATTCAGTGTAGGCATTTTCTTCTTGCGGATTTTCCATGATGGCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS CCA 90 bp | AACCAGTCAAGACTGGAGAGATATTATGGAGAAACAGAAAGACATTaGCCACAGTCCCAACCACAAACTGGCAAAGCAGGAGGATTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: NQSRLERYYGETERH*PQSQPQTGKAGGFE Trigger: TTCAAATCCTCCTGCTTTGCCAGTTTGTGGTTGGGACTGTGGCCAATGTCTTTCTGTTTCTCCATAATATCTCTCCAGTCTTGACTGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | AACATGTCCAGTTTGGATCCTGGTATCCTCCCTGGTGCTGAGAATTTAAACCTTTTAGAGTCAGTGTTATaGTCTGTAATCTGTGGACCT | + |
|
Preference number: 5 (lower is better) Translates to: NMSSLDPGILPGAENLNLLESVL*SVICGP Trigger: AGGTCCACAGATTACAGACAATAACACTGACTCTAA...AAGGTTTAAATTCTCAGCACCAGGGAGGATACCAGGATCCAAACTGGACATGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS TCA 90 bp | CTTCTTGCCACCAGGCGACTAAAGTATTCCAATTTACATTTGAGGTaGGTTGGAGAATTTCTTGGAGCAAAAGCCATCATGTCTGGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: LLATRRLKYSNLHLR*VGEFLGAKAIMSGN Trigger: ATTTCCAGACATGATGGCTTTTGCTCCAAGAAATTCTCCAACTCACCTCAAATGTAAATTGGAATACTTTAGTCGCCTGGTGGCAAGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | AGGAGTAAATACCACAACTCAGATTTTGAGTTTCATCACACTAACAGCTCTAACAGAAACAGAAAGACATaGGCCACAGTCCCAACCACA | + |
|
Preference number: 5 (lower is better) Translates to: RSKYHNSDFEFHHTNSSNRNRKT*ATVPTT Trigger: TGTGGTTGGGACTGTGGCCAATGTCTTTCTGTTTCT...GTTAGAGCTGTTAGTGTGATGAAACTCAAAATCTGAGTTGTGGTATTTACTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | ACAAAGTTATATTGTTCAATGCTTAACCCTCACCAGAGTAGAGTCAAAGATTGCAGAAACAGAAAGACATaGGCCACAGTCCCAACCACA | + |
|
Preference number: 5 (lower is better) Translates to: TKLYCSMLNPHQSRVKDCRNRKT*ATVPTT Trigger: TGTGGTTGGGACTGTGGCCAATGTCTTTCTGTTTCT...GCAATCTTTGACTCTACTCTGGTGAGGGTTAAGCATTGAACAATATAACTTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | CCTCCTCATTGTACTGACATCTCTTGTCTTCTGTCTGATTATCAGGAGTTACTGTTAGAGTCAGTGTTATaGTCTGTAATCTGTGGACCT | + |
|
Preference number: 5 (lower is better) Translates to: PPHCTDISCLLSDYQELLLESVL*SVICGP Trigger: AGGTCCACAGATTACAGACAATAACACTGACTCTAA...CAGTAACTCCTGATAATCAGACAGAAGACAAGAGATGTCAGTACAATGAGGAGG 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | GCCAGTAAGACACTAACCAGAGGTATTTCACACCAACAAATGATTATAACCTTAGCAAAGCAGGAGGATTaGAAGAGTCATGTCATCAGT | + |
|
Preference number: 5 (lower is better) Translates to: ASKTLTRGISHQQMIITLAKQED*KSHVIS Trigger: ACTGATGACATGACTCTTCAAATCCTCCTGCTTTGC...TAAGGTTATAATCATTTGTTGGTGTGAAATACCTCTGGTTAGTGTCTTACTGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | AGGAGTAAATACCACAACTCAGATTTTGAGTTTCATCACACTAACAGCTCTAACGCAAAGCAGGAGGATTaGAAGAGTCATGTCATCAGT | + |
|
Preference number: 5 (lower is better) Translates to: RSKYHNSDFEFHHTNSSNAKQED*KSHVIS Trigger: ACTGATGACATGACTCTTCAAATCCTCCTGCTTTGC...GTTAGAGCTGTTAGTGTGATGAAACTCAAAATCTGAGTTGTGGTATTTACTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS GCA 90 bp | GAACCAACAACTATAACAAGAATAACTCGTCAAGTTTGGGACACTTaGTCTGAGTATAGCTTTACCTCTATTAACAGGAACAAGAGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: EPTTITRITRQVWDT*SEYSFTSINRNKSD Trigger: GTCACTCTTGTTCCTGTTAATAGAGGTAAAGCTATACTCAGAGCAAGTGTCCCAAACTTGACGAGTTATTCTTGTTATAGTTGTTGGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | GAAAATATTATTGTGTTTAGAGAAGCCATCTACAGAAAGAGTGACAACTTTGCCGAGTTGGAGAATTTCTaGGAGCAAAAGCCATCATGT | + |
|
Preference number: 5 (lower is better) Translates to: ENIIVFREAIYRKSDNFAELENF*EQKPSC Trigger: ACATGATGGCTTTTGCTCCAAGAAATTCTCCAACTC...GGCAAAGTTGTCACTCTTTCTGTAGATGGCTTCTCTAAACACAATAATATTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS-3UTR CAA 90 bp | ACAAAGTTATATTGTTCAATGCTTAACCCTCACCAGAGTAGAGTCAAAGATTGCTTAGAGTCAGTGTTATaGTCTGTAATCTGTGGACCT | + |
|
Preference number: 5 (lower is better) Translates to: TKLYCSMLNPHQSRVKDCLESVL*SVICGP Trigger: AGGTCCACAGATTACAGACAATAACACTGACTCTAA...GCAATCTTTGACTCTACTCTGGTGAGGGTTAAGCATTGAACAATATAACTTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS CAA 90 bp | TGTGACCACCAGCATCAGGATAGTATGGGTTGCTCTGGTCTCAGCTaGGCCTCTGGCATCCTGATTGGGAGTGAGGATGTGCTGCATTCG | + |
|
Preference number: 6 (lower is better) Translates to: CDHQHQDSMGCSGLS*ASGILIGSEDVLHS Trigger: CGAATGCAGCACATCCTCACTCCCAATCAGGATGCCAGAGGCCAAGCTGAGACCAGAGCAACCCATACTATCCTGATGCTGGTGGTCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS CAA 90 bp | GACATTGGCCACAGTCCCAACCACAAACTGGCAAAGCAGGAGGATTaGAAGAGTCATGTCATCAGTGGTTTTCAGAGATTTATCATGAGC | + |
|
Preference number: 6 (lower is better) Translates to: DIGHSPNHKLAKQED*KSHVISGFQRFIMS Trigger: GCTCATGATAAATCTCTGAAAACCACTGATGACATGACTCTTCAAATCCTCCTGCTTTGCCAGTTTGTGGTTGGGACTGTGGCCAATGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS CCA 72 bp | AGACTGGAGAGATATTATGGAGAAACAGAAAGACATTaGCCACAGTCCCAACCACAAACTGGCAAAGCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: RLERYYGETERH*PQSQPQTGKAG Trigger: TCCTGCTTTGCCAGTTTGTGGTTGGGACTGTGGCCAATGTCTTTCTGTTTCTCCATAATATCTCTCCAGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS CCA 72 bp | CAACTGTCTGGGCCTCTGTTTAGAACCAGTCAAGACTaGAGAGATATTATGGAGAAACAGAAAGACATTGGC | + |
|
Preference number: 6 (lower is better) Translates to: QLSGPLFRTSQD*RDIMEKQKDIG Trigger: GCCAATGTCTTTCTGTTTCTCCATAATATCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCCAGACAGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS CAA 72 bp | CACAGTCCCAACCACAAACTGGCAAAGCAGGAGGATTaGAAGAGTCATGTCATCAGTGGTTTTCAGAGATTT | + |
|
Preference number: 6 (lower is better) Translates to: HSPNHKLAKQED*KSHVISGFQRF Trigger: AAATCTCTGAAAACCACTGATGACATGACTCTTCAAATCCTCCTGCTTTGCCAGTTTGTGGTTGGGACTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS TCA 72 bp | AGAATTTCTTGGAGCAAAAGCCATCATGTCTGGAAATaGAGTGAGGAAGAGAATCAAGGCATTGGCCACAGA | + |
|
Preference number: 6 (lower is better) Translates to: RISWSKSHHVWK*SEEENQGIGHR Trigger: TCTGTGGCCAATGCCTTGATTCTCTTCCTCACTTCATTTCCAGACATGATGGCTTTTGCTCCAAGAAATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS TCA 72 bp | ACCAGGCGACTAAAGTATTCCAATTTACATTTGAGGTaGGTTGGAGAATTTCTTGGAGCAAAAGCCATCATG | + |
|
Preference number: 6 (lower is better) Translates to: TRRLKYSNLHLR*VGEFLGAKAIM Trigger: CATGATGGCTTTTGCTCCAAGAAATTCTCCAACTCACCTCAAATGTAAATTGGAATACTTTAGTCGCCTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000227993.2 |
||
| CDS CAA 72 bp | GTGAAACAGAACAACTTGCTTTTAGAGTCAGTGTTATaGTCTGTAATCTGTGGACCTGTGACCTTAATTGCA | + |
|
Preference number: 6 (lower is better) Translates to: VKQNNLLLESVL*SVICGPVTLIA Trigger: TGCAATTAAGGTCACAGGTCCACAGATTACAGACAATAACACTGACTCTAAAAGCAAGTTGTTCTGTTTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS GCA 72 bp | ACTATAACAAGAATAACTCGTCAAGTTTGGGACACTTaGTCTGAGTATAGCTTTACCTCTATTAACAGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: TITRITRQVWDT*SEYSFTSINRN Trigger: GTTCCTGTTAATAGAGGTAAAGCTATACTCAGAGCAAGTGTCCCAAACTTGACGAGTTATTCTTGTTATAGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS CCA 72 bp | GAACCAACAACTATAACAAGAATAACTCGTCAAGTTTaGGACACTTGCTCTGAGTATAGCTTTACCTCTATT | + |
|
Preference number: 6 (lower is better) Translates to: EPTTITRITRQV*DTCSEYSFTSI Trigger: AATAGAGGTAAAGCTATACTCAGAGCAAGTGTCCCAAACTTGACGAGTTATTCTTGTTATAGTTGTTGGTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||
| CDS CAA 72 bp | ATGCCTACACTGAATCCAGAAGTGAAACAGAACAACTaGCTTTTAGAGTCAGTGTTATTGTCTGTAATCTGT | + |
|
Preference number: 6 (lower is better) Translates to: MPTLNPEVKQNN*LLESVLLSVIC Trigger: ACAGATTACAGACAATAACACTGACTCTAAAAGCAAGTTGTTCTGTTTCACTTCTGGATTCAGTGTAGGCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000078593.3 ENSMUST00000226450.2 ENSMUST00000226489.2 ENSMUST00000226640.2 ENSMUST00000227993.2 |
||