Pregenerated sensors for VMN1R175 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095632Ensembl transcript IDs: ENSMUST00000166141.2, ENSMUST00000228383.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TATGAGACCCCTTATAAGTTGCAGTTTCTCCAGGCCATGTGCTTCTaGTCTACTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC | + |
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Preference number: 1 (lower is better) Translates to: YETPYKLQFLQAMCF*STFLPSFLPSFLPS Trigger: GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGTAGAGCAGAAGCACATGGCCTGGAGAAACTGCAACTTATAAGGGGTCTCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR GCA 90 bp | GAGAGATGTGAAACAGTTTCTCTGCATCACAGGCTCAGCTGGATATaGAGCTATAGTATGAGCAGCAATGTATTGCATGACAATCTAACC | + |
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Preference number: 1 (lower is better) Translates to: ERCETVSLHHRLSWI*SYSMSSNVLHDNLT Trigger: GGTTAGATTGTCATGCAATACATTGCTGCTCATACTATAGCTGCATATCCAGCTGAGCCTGTGATGCAGAGAAACTGTTTCACATCTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR TCA 90 bp | GCAACCCAAATATGCCCCAGCAATGAAAGCACTACTCAATTAATATaGATACAAACTGTGCACCTAGATTGGGCAGATCTACCTCTACAC | + |
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Preference number: 1 (lower is better) Translates to: ATQICPSNESTTQLI*IQTVHLDWADLPLH Trigger: GTGTAGAGGTAGATCTGCCCAATCTAGGTGCACAGTTTGTATTCATATTAATTGAGTAGTGCTTTCATTGCTGGGGCATATTTGGGTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR GCA 90 bp | CACCTTCTTCTCTCTCCCAACATTCAGCTCCACATTACCTTCCTCTaGCCATCACTAGCTATAGCCTTTATTTTACCTATTAAAATGGGA | + |
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Preference number: 1 (lower is better) Translates to: HLLLSPNIQLHITFL*PSLAIAFILPIKMG Trigger: TCCCATTTTAATAGGTAAAATAAAGGCTATAGCTAGTGATGGGCAGAGGAAGGTAATGTGGAGCTGAATGTTGGGAGAGAGAAGAAGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR-3UTR GCA 90 bp | GGAGGAGAGAGATGTGAAACAGTTTCTCTGCATCACAGGCTCAGCTGGATATGCTCTGCAACCCAAATATaGCCCAGCAATGAAAGCACT | + |
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Preference number: 2 (lower is better) Translates to: GGERCETVSLHHRLSWICSATQI*PSNEST Trigger: AGTGCTTTCATTGCTGGGGCATATTTGGGTTGCAGA...GCATATCCAGCTGAGCCTGTGATGCAGAGAAACTGTTTCACATCTCTCTCCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCCCTACGAAAAGGAAAAGATTATCAAGAATATGGACTTTAGTATTGTCTCAACTGTGCACCTAGATTaGGCAGATCTACCTCTACAC | + |
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Preference number: 2 (lower is better) Translates to: QPYEKEKIIKNMDFSIVSTVHLD*ADLPLH Trigger: GTGTAGAGGTAGATCTGCCCAATCTAGGTGCACAGT...TGAGACAATACTAAAGTCCATATTCTTGATAATCTTTTCCTTTTCGTAGGGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCCCTACGAAAAGGAAAAGATTATCAAGAATATGGACTTTAGTATTGTCTCAATTAAAATGGGAAGATaGTTTACAGGAAATCACCTG | + |
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Preference number: 2 (lower is better) Translates to: QPYEKEKIIKNMDFSIVSIKMGR*FTGNHL Trigger: CAGGTGATTTCCTGTAAACCATCTTCCCATTTTAAT...TGAGACAATACTAAAGTCCATATTCTTGATAATCTTTTCCTTTTCGTAGGGCTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR GCA 72 bp | GAAACAGTTTCTCTGCATCACAGGCTCAGCTGGATATaGAGCTATAGTATGAGCAGCAATGTATTGCATGAC | + |
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Preference number: 3 (lower is better) Translates to: ETVSLHHRLSWI*SYSMSSNVLHD Trigger: GTCATGCAATACATTGCTGCTCATACTATAGCTGCATATCCAGCTGAGCCTGTGATGCAGAGAAACTGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR GCA 72 bp | TTTCTCAAGGAGGAGAGAGATGTGAAACAGTTTCTCTaGATCACAGGCTCAGCTGGATATGCAGCTATAGTA | + |
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Preference number: 3 (lower is better) Translates to: FLKEERDVKQFL*ITGSAGYAAIV Trigger: TACTATAGCTGCATATCCAGCTGAGCCTGTGATGCAGAGAAACTGTTTCACATCTCTCTCCTCCTTGAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR GCA 72 bp | CTCTCTCCCAACATTCAGCTCCACATTACCTTCCTCTaGCCATCACTAGCTATAGCCTTTATTTTACCTATT | + |
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Preference number: 3 (lower is better) Translates to: LSPNIQLHITFL*PSLAIAFILPI Trigger: AATAGGTAAAATAAAGGCTATAGCTAGTGATGGGCAGAGGAAGGTAATGTGGAGCTGAATGTTGGGAGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR GCA 72 bp | CTACCATCTTTTCTATCTATGAGACCCCTTATAAGTTaGAGTTTCTCCAGGCCATGTGCTTCTGCTCTACTT | + |
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Preference number: 3 (lower is better) Translates to: LPSFLSMRPLIS*SFSRPCASALL Trigger: AAGTAGAGCAGAAGCACATGGCCTGGAGAAACTGCAACTTATAAGGGGTCTCATAGATAGAAAAGATGGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR CCA 72 bp | AGATGTGAAACAGTTTCTCTGCATCACAGGCTCAGCTaGATATGCAGCTATAGTATGAGCAGCAATGTATTG | + |
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Preference number: 3 (lower is better) Translates to: RCETVSLHHRLS*ICSYSMSSNVL Trigger: CAATACATTGCTGCTCATACTATAGCTGCATATCCAGCTGAGCCTGTGATGCAGAGAAACTGTTTCACATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR TCA 72 bp | ATATGCCCCAGCAATGAAAGCACTACTCAATTAATATaGATACAAACTGTGCACCTAGATTGGGCAGATCTA | + |
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Preference number: 3 (lower is better) Translates to: ICPSNESTTQLI*IQTVHLDWADL Trigger: TAGATCTGCCCAATCTAGGTGCACAGTTTGTATTCATATTAATTGAGTAGTGCTTTCATTGCTGGGGCATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS-3UTR TCA 90 bp | CTAGTGGGCAGTATTGGTAATTCTGCAACCCAAATATGCCCCAGCAATGAAAGCCAATCAGAAAAATGTTaGCTGCAGTCCCAAACCCAA | + |
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Preference number: 4 (lower is better) Translates to: LVGSIGNSATQICPSNESQSEKC*LQSQTQ Trigger: TTGGGTTTGGGACTGCAGTCAACATTTTTCTGATTG...GCTTTCATTGCTGGGGCATATTTGGGTTGCAGAATTACCAATACTGCCCACTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR CAA 72 bp | ACTACCATCTTTTCTATCTATGAGACCCCTTATAAGTaGCAGTTTCTCCAGGCCATGTGCTTCTGCTCTACT | + |
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Preference number: 4 (lower is better) Translates to: TTIFSIYETPYK*QFLQAMCFCST Trigger: AGTAGAGCAGAAGCACATGGCCTGGAGAAACTGCAACTTATAAGGGGTCTCATAGATAGAAAAGATGGTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS-3UTR CCA 90 bp | CTTCTTCTCTCTCCCAACATTCAGCTCCACATTACCTTCCTCTGCCCATCACTATCATTATGTGTTTTCTaGGGACCATTGACTTTCATT | + |
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Preference number: 4 (lower is better) Translates to: LLLSPNIQLHITFLCPSLSLCVF*GPLTFI Trigger: AATGAAAGTCAATGGTCCCCAGAAAACACATAATGA...TAGTGATGGGCAGAGGAAGGTAATGTGGAGCTGAATGTTGGGAGAGAGAAGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| 3UTR CAA 72 bp | AGATGGTTTACAGGAAATCACCTGAATGCTGACTCTTaGCTTGTTCACAACCCTTCCCAAGACAACAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: RWFTGNHLNADS*LVHNPSQDNRN Trigger: ATTTCTGTTGTCTTGGGAAGGGTTGTGAACAAGCAAAGAGTCAGCATTCAGGTGATTTCCTGTAAACCATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS-3UTR CCA 90 bp | TTCCTCTGCCCATCACTAGCTATAGCCTTTATTTTACCTATTAAAATGGGAAGATGCTCAGAAAGCAGGTaGAGCACATGTTTGTACTTC | + |
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Preference number: 4 (lower is better) Translates to: FLCPSLAIAFILPIKMGRCSESR*STCLYF Trigger: GAAGTACAAACATGTGCTCCACCTGCTTTCTGAGCA...TCTTCCCATTTTAATAGGTAAAATAAAGGCTATAGCTAGTGATGGGCAGAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS-3UTR TCA 90 bp | CAGCCCTACGAAAAGGAAAAGATTATCAAGAATATGGACTTTAGTATTGTCTCATTTTCTGGGGACCATTaGCTTTCATTGGAATGTGAG | + |
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Preference number: 4 (lower is better) Translates to: QPYEKEKIIKNMDFSIVSFSGDH*LSLECE Trigger: CTCACATTCCAATGAAAGTCAATGGTCCCCAGAAAA...TGAGACAATACTAAAGTCCATATTCTTGATAATCTTTTCCTTTTCGTAGGGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS-3UTR CAA 90 bp | GGAGGAGAGAGATGTGAAACAGTTTCTCTGCATCACAGGCTCAGCTGGATATGCATATACCTCACAAATTaGGGGGCTCTTCCACGGAGC | + |
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Preference number: 5 (lower is better) Translates to: GGERCETVSLHHRLSWICIYLTN*GALPRS Trigger: GCTCCGTGGAAGAGCCCCCAAATTTGTGAGGTATAT...GCATATCCAGCTGAGCCTGTGATGCAGAGAAACTGTTTCACATCTCTCTCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS-3UTR CAA 90 bp | CTTCTTCTCTCTCCCAACATTCAGCTCCACATTACCTTCCTCTGCCCATCACTAACAATCAGAAAAATGTaGACTGCAGTCCCAAACCCA | + |
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Preference number: 5 (lower is better) Translates to: LLLSPNIQLHITFLCPSLTIRKM*TAVPNP Trigger: TGGGTTTGGGACTGCAGTCAACATTTTTCTGATTGT...TAGTGATGGGCAGAGGAAGGTAATGTGGAGCTGAATGTTGGGAGAGAGAAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS-3UTR CAA 90 bp | CTAGTGGGCAGTATTGGTAATTCTGCAACCCAAATATGCCCCAGCAATGAAAGCACATCCAAAATTTGTTaGACACGCCTCAACCAGACC | + |
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Preference number: 5 (lower is better) Translates to: LVGSIGNSATQICPSNESTSKIC*TRLNQT Trigger: GGTCTGGTTGAGGCGTGTCAAACAAATTTTGGATGT...GCTTTCATTGCTGGGGCATATTTGGGTTGCAGAATTACCAATACTGCCCACTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS TCA 90 bp | ATCCATTCAAGATTGGAGATAAATTATGAACAATCAGAAAAATGTTaGCTGCAGTCCCAAACCCAACCTGGCAAAGCAAGAGGACCTGAA | + |
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Preference number: 5 (lower is better) Translates to: IHSRLEINYEQSEKC*LQSQTQPGKARGPE Trigger: TTCAGGTCCTCTTGCTTTGCCAGGTTGGGTTTGGGACTGCAGTCAACATTTTTCTGATTGTTCATAATTTATCTCCAATCTTGAATGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000166141.2 ENSMUST00000228383.2 |
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| CDS-3UTR CAA 90 bp | CAGCCCTACGAAAAGGAAAAGATTATCAAGAATATGGACTTTAGTATTGTCTCACTTCTGATTTGTGGATaGAATATGCTGCAATCTTTG | + |
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Preference number: 5 (lower is better) Translates to: QPYEKEKIIKNMDFSIVSLLICG*NMLQSL Trigger: CAAAGATTGCAGCATATTCAATCCACAAATCAGAAG...TGAGACAATACTAAAGTCCATATTCTTGATAATCTTTTCCTTTTCGTAGGGCTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228383.2 |
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| CDS TCA 72 bp | GGAGCATCACCCTACCCCAGGTACCTGGAGCAAGAGTaGCAAGCTGATAAGTGCTCAGAAAGCAGGTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: GASPYPRYLEQE*QADKCSESRWS Trigger: GCTCCACCTGCTTTCTGAGCACTTATCAGCTTGTCACTCTTGCTCCAGGTACCTGGGGTAGGGTGATGCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166141.2 ENSMUST00000228383.2 |
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| CDS CCA 72 bp | GGCTCTTCCACGGAGCATCACCCTACCCCAGGTACCTaGAGCAAGAGTGACAAGCTGATAAGTGCTCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: GSSTEHHPTPGT*SKSDKLISAQK Trigger: TTTCTGAGCACTTATCAGCTTGTCACTCTTGCTCCAGGTACCTGGGGTAGGGTGATGCTCCGTGGAAGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166141.2 ENSMUST00000228383.2 |
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| CDS CAA 90 bp | GGATGCTCTAGTCTCAGCATGAACTCTGAGCTTCTGATTTGTGGATaGAATATGCTGCAATCTTTGGTGGTGTCTGTTCAGGAGAATCAC | + |
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Preference number: 6 (lower is better) Translates to: GCSSLSMNSELLICG*NMLQSLVVSVQENH Trigger: GTGATTCTCCTGAACAGACACCACCAAAGATTGCAGCATATTCAATCCACAAATCAGAAGCTCAGAGTTCATGCTGAGACTAGAGCATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166141.2 ENSMUST00000228383.2 |
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| CDS CAA 72 bp | GAGCTTCTGATTTGTGGATTGAATATGCTGCAATCTTaGGTGGTGTCTGTTCAGGAGAATCACCATGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: ELLICGLNMLQS*VVSVQENHHGD Trigger: GTCTCCATGGTGATTCTCCTGAACAGACACCACCAAAGATTGCAGCATATTCAATCCACAAATCAGAAGCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166141.2 ENSMUST00000228383.2 |
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