Pregenerated sensors for VMN1R172 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035523Ensembl transcript IDs: ENSMUST00000038694.9, ENSMUST00000173101.3
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCACATTGTATAGGACCACCCACAGATGTCTCATTTGGCTCAGGTaGGGAGAGTACTCCCTGTGTGGGCAGGTGGAGGATGCCAAGAGG | + |
|
Preference number: 1 (lower is better) Translates to: STLYRTTHRCLIWLR*GEYSLCGQVEDAKR Trigger: CCTCTTGGCATCCTCCACCTGCCCACACAGGGAGTACTCTCCCCACCTGAGCCAAATGAGACATCTGTGGGTGGTCCTATACAATGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR GCA 90 bp | AACTGGCTGTGGTTCTCTGAACAATTGGACCCTCCTCTTAGCCTCTaGAGCACTAAAAGGAGCTATTCATGTACCTTTCCTGGGCAGGAA | + |
|
Preference number: 1 (lower is better) Translates to: NWLWFSEQLDPPLSL*STKRSYSCTFPGQE Trigger: TTCCTGCCCAGGAAAGGTACATGAATAGCTCCTTTTAGTGCTGCAGAGGCTAAGAGGAGGGTCCAATTGTTCAGAGAACCACAGCCAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 90 bp | AGGGTTCTGTGTCAATATAGTGGCTCATGTTACCACATAAGACCTTaGAGTCATCCCTGGTCTGGGTTGTTTCTGGACCATGTAGATGTC | + |
|
Preference number: 1 (lower is better) Translates to: RVLCQYSGSCYHIRP*SHPWSGLFLDHVDV Trigger: GACATCTACATGGTCCAGAAACAACCCAGACCAGGGATGACTTCAAGGTCTTATGTGGTAACATGAGCCACTATATTGACACAGAACCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR GCA 90 bp | GTTGAGGATGCTCAGAAGACTATGTGCCACATAGCCATTATGATGTaGAAGTATGTGGTGGACAGATGGAAGAGAAAGAAAAGCAGAACA | + |
|
Preference number: 1 (lower is better) Translates to: VEDAQKTMCHIAIMM*KYVVDRWKRKKSRT Trigger: TGTTCTGCTTTTCTTTCTCTTCCATCTGTCCACCACATACTTGCACATCATAATGGCTATGTGGCACATAGTCTTCTGAGCATCCTCAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR GCA 90 bp | AACGAACAACTGAAGATTACACATATAGGGAACAATGGCTTCGGCTaGATATATAGCATAAGCTGGCATTTTCTGGCATCAATAGGAGGA | + |
|
Preference number: 1 (lower is better) Translates to: NEQLKITHIGNNGFG*IYSISWHFLASIGG Trigger: TCCTCCTATTGATGCCAGAAAATGCCAGCTTATGCTATATATGCAGCCGAAGCCATTGTTCCCTATATGTGTAATCTTCAGTTGTTCGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 90 bp | TACAACAAAGGATATCTGAGAGAAAACCCAAAAGGGATCCAATATTaGTGGTGTGGCAGAAGTCATAGGCCTGAATATTTGCAAGTAAAG | + |
|
Preference number: 1 (lower is better) Translates to: YNKGYLRENPKGIQY*WCGRSHRPEYLQVK Trigger: CTTTACTTGCAAATATTCAGGCCTATGACTTCTGCCACACCATCAATATTGGATCCCTTTTGGGTTTTCTCTCAGATATCCTTTGTTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGGATGGAACCCATTCCTaGAACTGGGTGGTGAAGAAG | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAEDGTHS*NWVVKK Trigger: CTTCTTCACCACCCAGTTTCAGGAATGGGTTCCATC...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR GCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGGGAGAGGAGGGAAGATaGGTGTTTAAGCTGTACGTG | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAEGEEGR*VFKLYV Trigger: CACGTACAGCTTAAACACGCATCTTCCCTCCTCTCC...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 90 bp | TGCAGAGCTTGTCCTGCCCCTAACTGGCTGTGGTTCTCTGAACAATaGGACCCTCCTCTTAGCCTCTGCAGCACTAAAAGGAGCTATTCA | + |
|
Preference number: 2 (lower is better) Translates to: CRACPAPNWLWFSEQ*DPPLSLCSTKRSYS Trigger: TGAATAGCTCCTTTTAGTGCTGCAGAGGCTAAGAGGAGGGTCCAATTGTTCAGAGAACCACAGCCAGTTAGGGGCAGGACAAGCTCTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGCAAATGGATCCCATGTaGATTCTCCAAAGCATCCGG | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAEQMDPM*ILQSIR Trigger: CCGGATGCTTTGGAGAATTCACATGGGATCCATTTG...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGGCAAGAGTAACACATTaGCTTCCCAAGACAAGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAEARVTH*LPKTRE Trigger: TTCCCTTGTCTTGGGAAGTCAATGTGTTACTCTTGC...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACACCTCAGCCCATGGTTaGTCACCGACACTGAACCAC | + |
|
Preference number: 2 (lower is better) Translates to: VWMRLAEMPNKGERDPVDTSAHG*SPTLNH Trigger: GTGGTTCAGTGTCGGTGATCAACCATGGGCTGAGGT...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGCATTGTCTGATGCTCTaGAACAGCAAGAGTAACACA | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAEHCLML*NSKSNT Trigger: TGTGTTACTCTTGCTGTTTCAGAGCATCAGACAATG...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACAAGGGGACATGGGAATaGGGAATGGGGTATGAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: VWMRLAEMPNKGERDPVDKGTWE*GMGYEG Trigger: ACCCTCATACCCCATTCCCCATTCCCATGTCCCCTT...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGTTGAATACTCAGTCCTaGATGGGATGTCTTCATCAA | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAELNTQS*MGCLHQ Trigger: TTGATGAAGACATCCCATCCAGGACTGAGTATTCAA...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGATAGATAATAATGGATaGATATCAGAGGGGAACAGC | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAEIDNNG*ISEGNS Trigger: GCTGTTCCCCTCTGATATCCATCCATTATTATCTAT...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACCATGGGAATGGGGAATaGGGTATGAGGGTAGAACTT | + |
|
Preference number: 2 (lower is better) Translates to: VWMRLAEMPNKGERDPVDHGNGE*GMRVEL Trigger: AAGTTCTACCCTCATACCCCATTCCCCATTCCCATG...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR GCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGAATCTACAGACTCAATaGAAAACAAAAGCTGGAAAG | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAENLQTQ*KTKAGK Trigger: CTTTCCAGCTTTTGTTTTGCATTGAGTCTGTAGATT...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGTTATGTAGCAAGAAATaGACACTGATTTCCACCAAA | + |
|
Preference number: 2 (lower is better) Translates to: RTRAGIPKLMGHRESSAELCSKK*TLISTK Trigger: TTTGGTGGAAATCAGTGTCCATTTCTTGCTACATAA...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACTCTATGGACTTATCATaGGCTCCAAAATGCAGCGGT | + |
|
Preference number: 2 (lower is better) Translates to: VWMRLAEMPNKGERDPVDSMDLS*APKCSG Trigger: ACCGCTGCATTTTGGAGCCCATGATAAGTCCATAGA...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 90 bp | TATGGACTTATCATGGGCTCCAAAATGCAGCGGTTAGAGAAAGGATaGAAGGAGCCAAAGGGTTTGCAGCCTCATAAGAAGAACAACAAT | + |
|
Preference number: 2 (lower is better) Translates to: YGLIMGSKMQRLEKG*KEPKGLQPHKKNNN Trigger: ATTGTTGTTCTTCTTATGAGGCTGCAAACCCTTTGGCTCCTTCAATCCTTTCTCTAACCGCTGCATTTTGGAGCCCATGATAAGTCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | TGTCTATCCAGGAAGGGAACTAGAATAGATAATAATGGATGGATATCAGAGGGGCAAATGGATCCCATGTaGATTCTCCAAAGCATCCGG | + |
|
Preference number: 2 (lower is better) Translates to: CLSRKGTRIDNNGWISEGQMDPM*ILQSIR Trigger: CCGGATGCTTTGGAGAATTCACATGGGATCCATTTG...CCCCTCTGATATCCATCCATTATTATCTATTCTAGTTCCCTTCCTGGATAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACACCCAGAAACTATTGTaGATACCAAGAAGTGCTTGT | + |
|
Preference number: 2 (lower is better) Translates to: VWMRLAEMPNKGERDPVDTQKLL*IPRSAC Trigger: ACAAGCACTTCTTGGTATCCACAATAGTTTCTGGGT...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 90 bp | GGATGTCTTCATCAAATCCTTTTCTTCAGGAGTTATAGAAGTCTTTaGGATTGGAGACCTAGGAAGTATAAGAGCCAAAGGGGAAGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: GCLHQILFFRSYRSL*DWRPRKYKSQRGRR Trigger: CCTCCTTCCCCTTTGGCTCTTATACTTCCTAGGTCTCCAATCCAAAAGACTTCTATAACTCCTGAAGAAAAGGATTTGATGAAGACATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | GGCCACAGGGCAACACGAAATACTAGTGTACTGCTAAAGAAATATACCAACAAAAAGGGAAAACTTATGTaGTCTACCTCCCTTTCCCTA | + |
|
Preference number: 2 (lower is better) Translates to: GHRATRNTSVLLKKYTNKKGKLM*STSLSL Trigger: TAGGGAAAGGGAGGTAGATCACATAAGTTTTCCCTT...TTTGTTGGTATATTTCTTTAGCAGTACACTAGTATTTCGTGTTGCCCTGTGGCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | TGTCTATCCAGGAAGGGAACTAGAATAGATAATAATGGATGGATATCAGAGGGGAGAGTGAGATACTTTTaGATACTCAGTCCTGGATGG | + |
|
Preference number: 2 (lower is better) Translates to: CLSRKGTRIDNNGWISEGRVRYF*ILSPGW Trigger: CCATCCAGGACTGAGTATTCAAAAGTATCTCACTCT...CCCCTCTGATATCCATCCATTATTATCTATTCTAGTTCCCTTCCTGGATAGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR GCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACTGCAGATGTAGTATATaGACAGCTAGTTTTTCATGT | + |
|
Preference number: 2 (lower is better) Translates to: VWMRLAEMPNKGERDPVDCRCSI*TASFSC Trigger: ACATGAAAAACTAGCTGTGCATATACTACATCTGCA...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACTTATGTAGCAAGAAATaGACACTGATTTCCACCAAA | + |
|
Preference number: 2 (lower is better) Translates to: VWMRLAEMPNKGERDPVDLCSKK*TLISTK Trigger: TTTGGTGGAAATCAGTGTCCATTTCTTGCTACATAA...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | GGATGGGATGTCTTCATCAAATCCTTTTCTTCAGGAGTTATAGAAGTCTTTTGGAAGGGAAAACTTATGTaGTCTACCTCCCTTTCCCTA | + |
|
Preference number: 2 (lower is better) Translates to: GWDVFIKSFSSGVIEVFWKGKLM*STSLSL Trigger: TAGGGAAAGGGAGGTAGATCACATAAGTTTTCCCTT...CCAAAAGACTTCTATAACTCCTGAAGAAAAGGATTTGATGAAGACATCCCATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR TCA 90 bp | CAGCATGCACATATACACTCCAAGAAAATGAGAGTTTATGTACTAGACCTTCATGCAAGAGTAACACATTaGCTTCCCAAGACAAGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: QHAHIHSKKMRVYVLDLHARVTH*LPKTRE Trigger: TTCCCTTGTCTTGGGAAGTCAATGTGTTACTCTTGC...ATGAAGGTCTAGTACATAAACTCTCATTTTCTTGGAGTGTATATGTGCATGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CCA 90 bp | GGCCACAGGGCAACACGAAATACTAGTGTACTGCTAAAGAAATATACCAACAAATTGAATACTCAGTCCTaGATGGGATGTCTTCATCAA | + |
|
Preference number: 2 (lower is better) Translates to: GHRATRNTSVLLKKYTNKLNTQS*MGCLHQ Trigger: TTGATGAAGACATCCCATCCAGGACTGAGTATTCAA...TTTGTTGGTATATTTCTTTAGCAGTACACTAGTATTTCGTGTTGCCCTGTGGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | TATAGGACCACCCACAGATGTCTCATTTGGCTCAGGTaGGGAGAGTACTCCCTGTGTGGGCAGGTGGAGGAT | + |
|
Preference number: 3 (lower is better) Translates to: YRTTHRCLIWLR*GEYSLCGQVED Trigger: ATCCTCCACCTGCCCACACAGGGAGTACTCTCCCCACCTGAGCCAAATGAGACATCTGTGGGTGGTCCTATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | GTCCAAGTGCAGTGCAGAGCTTGTCCTGCCCCTAACTaGCTGTGGTTCTCTGAACAATTGGACCCTCCTCTT | + |
|
Preference number: 3 (lower is better) Translates to: VQVQCRACPAPN*LWFSEQLDPPL Trigger: AAGAGGAGGGTCCAATTGTTCAGAGAACCACAGCCAGTTAGGGGCAGGACAAGCTCTGCACTGCACTTGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | GTCCTGCCCCTAACTGGCTGTGGTTCTCTGAACAATTaGACCCTCCTCTTAGCCTCTGCAGCACTAAAAGGA | + |
|
Preference number: 3 (lower is better) Translates to: VLPLTGCGSLNN*TLLLASAALKG Trigger: TCCTTTTAGTGCTGCAGAGGCTAAGAGGAGGGTCCAATTGTTCAGAGAACCACAGCCAGTTAGGGGCAGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CAA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGAAGGAGCCAAAGGGTTaGCAGCCTCATAAGAAGAAC | + |
|
Preference number: 3 (lower is better) Translates to: RTRAGIPKLMGHRESSAEKEPKG*QPHKKN Trigger: GTTCTTCTTATGAGGCTGCAAACCCTTTGGCTCCTT...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | GATTCCAGGAAAGCAAGAGGCTCCCAGGAACCAGTATaGATGAGATTAGCTGAAATGCCCAACAAAGGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: DSRKARGSQEPV*MRLAEMPNKGE Trigger: CTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATACTGGTTCCTGGGAGCCTCTTGCTTTCCTGGAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CAA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGTTATGGCTATTAGGGTaGTGCTCAAATGGATCCCAT | + |
|
Preference number: 3 (lower is better) Translates to: RTRAGIPKLMGHRESSAELWLLG*CSNGSH Trigger: ATGGGATCCATTTGAGCACAACCCTAATAGCCATAA...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CAA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGCAAACCCAGAAACTATaGTGGATACCAAGAAGTGCT | + |
|
Preference number: 3 (lower is better) Translates to: RTRAGIPKLMGHRESSAEQTQKL*WIPRSA Trigger: AGCACTTCTTGGTATCCACAATAGTTTCTGGGTTTG...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 72 bp | AAGAGGCTCCCAGGAACCAGTATGGATGAGATTAGCTaGAATGCCCAACAAAGGGGAGAGAGATCCTGTAGA | + |
|
Preference number: 3 (lower is better) Translates to: KRLPGTSMDEIS*NAQQRGERSCR Trigger: TCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATACTGGTTCCTGGGAGCCTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR GCA 72 bp | GGGCTAGTCCTAGGACCCCTATGCAGATGTAGTATATaGACAGCTAGTTTTTCATGTGGGTCACCTAACAAT | + |
|
Preference number: 3 (lower is better) Translates to: GLVLGPLCRCSI*TASFSCGSPNN Trigger: ATTGTTAGGTGACCCACATGAAAAACTAGCTGTGCATATACTACATCTGCATAGGGGTCCTAGGACTAGCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR GCA 72 bp | TGGTTCTCTGAACAATTGGACCCTCCTCTTAGCCTCTaGAGCACTAAAAGGAGCTATTCATGTACCTTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: WFSEQLDPPLSL*STKRSYSCTFP Trigger: AGGAAAGGTACATGAATAGCTCCTTTTAGTGCTGCAGAGGCTAAGAGGAGGGTCCAATTGTTCAGAGAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | GGGAACAATGGCTTCGGCTGCATATATAGCATAAGCTaGCATTTTCTGGCATCAATAGGAGGAGAAGCACTT | + |
|
Preference number: 3 (lower is better) Translates to: GNNGFGCIYSIS*HFLASIGGEAL Trigger: AAGTGCTTCTCCTCCTATTGATGCCAGAAAATGCCAGCTTATGCTATATATGCAGCCGAAGCCATTGTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR-3UTR CAA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACATCAGAAGATTCCTTTaGCAGCAGATAGGGACTAAC | + |
|
Preference number: 3 (lower is better) Translates to: VWMRLAEMPNKGERDPVDIRRFL*QQIGTN Trigger: GTTAGTCCCTATCTGCTGCAAAAGGAATCTTCTGAT...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 72 bp | ATCCCATGTGAATTCTCCAAAGCATCCGGGCTTTTATaGAGGCTACTTGCTGAACGCTACAAACTGACAGTA | + |
|
Preference number: 3 (lower is better) Translates to: IPCEFSKASGLL*RLLAERYKLTV Trigger: TACTGTCAGTTTGTAGCGTTCAGCAAGTAGCCTTCATAAAAGCCCGGATGCTTTGGAGAATTCACATGGGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | AAGCACCTAAGAATTAACCACTTGCCCCTTGCTCCATaGAAACTAGGCAAACACATGCACATGAATATGCAC | + |
|
Preference number: 3 (lower is better) Translates to: KHLRINHLPLAP*KLGKHMHMNMH Trigger: GTGCATATTCATGTGCATGTGTTTGCCTAGTTTCCATGGAGCAAGGGGCAAGTGGTTAATTCTTAGGTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | CCACCAAATGAAGCTTTTCAGAACCATAATGGGTTATaGCTATTAGGGTTGTGCTCAAATGGATCCCATGTG | + |
|
Preference number: 3 (lower is better) Translates to: PPNEAFQNHNGL*LLGLCSNGSHV Trigger: CACATGGGATCCATTTGAGCACAACCCTAATAGCCATAACCCATTATGGTTCTGAAAAGCTTCATTTGGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 72 bp | GGATATCTGAGAGAAAACCCAAAAGGGATCCAATATTaGTGGTGTGGCAGAAGTCATAGGCCTGAATATTTG | + |
|
Preference number: 3 (lower is better) Translates to: GYLRENPKGIQY*WCGRSHRPEYL Trigger: CAAATATTCAGGCCTATGACTTCTGCCACACCATCAATATTGGATCCCTTTTGGGTTTTCTCTCAGATATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 72 bp | AAAAATCCAAATCCCATCTTAGAAGCATCCTCACAATaGCCTCACACATCACAGGACAGTGTATACACAAAA | + |
|
Preference number: 3 (lower is better) Translates to: KNPNPILEASSQ*PHTSQDSVYTK Trigger: TTTTGTGTATACACTGTCCTGTGATGTGTGAGGTCATTGTGAGGATGCTTCTAAGATGGGATTTGGATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CCA 72 bp | ATCAAATCCTTTTCTTCAGGAGTTATAGAAGTCTTTTaGATTGGAGACCTAGGAAGTATAAGAGCCAAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: IKSFSSGVIEVF*IGDLGSIRAKG Trigger: CCCTTTGGCTCTTATACTTCCTAGGTCTCCAATCCAAAAGACTTCTATAACTCCTGAAGAAAAGGATTTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 72 bp | GTAGGACTATTACTTCAAGTCTCTGAAGAAAGAAATTaGAGATCTCAGAAGATGGAAAGATATCCCATGCTC | + |
|
Preference number: 3 (lower is better) Translates to: VGLLLQVSEERN*RSQKMERYPML Trigger: GAGCATGGGATATCTTTCCATCTTCTGAGATCTTCAATTTCTTTCTTCAGAGACTTGAAGTAATAGTCCTAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR TCA 72 bp | AGATGTTTATACAGATGGTGCTCTTTATCCGTCTGCTaGATGAGCATCCTTTTCGATGTGTCTATTATAAAT | + |
|
Preference number: 3 (lower is better) Translates to: RCLYRWCSLSVC*MSILFDVSIIN Trigger: ATTTATAATAGACACATCGAAAAGGATGCTCATTCAGCAGACGGATAAAGAGCACCATCTGTATAAACATCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR GCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGGAGAATTGTGTATGCTaGTCTGGCCTCTGGTTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RTRAGIPKLMGHRESSAEENCVC*SGLWLK Trigger: CTTCAACCAGAGGCCAGAGCAGCATACACAATTCTC...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR GCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGAATGGTGGGGAAACTTaGAGCCCAAATTCCACTGAC | + |
|
Preference number: 4 (lower is better) Translates to: RTRAGIPKLMGHRESSAENGGET*SPNSTD Trigger: GTCAGTGGAATTTGGGCTGCAAGTTTCCCCACCATT...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CCA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGTTAAGGGAGAAATGGTaGGGAAACTTGCAGCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: RTRAGIPKLMGHRESSAELREKW*GNLQPK Trigger: TTTGGGCTGCAAGTTTCCCCACCATTTCTCCCTTAA...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACCTCCCATTGGACCTGTaGATGTGTTTCAGGCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: VWMRLAEMPNKGERDPVDLPLDL*MCFRLW Trigger: CCAAAGCCTGAAACACATTCACAGGTCCAATGGGAG...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACACATTAAGGGAGAAATaGTGGGGAAACTTGCAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VWMRLAEMPNKGERDPVDTLREK*WGNLQP Trigger: GGGCTGCAAGTTTCCCCACCATTTCTCCCTTAATGT...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 72 bp | ATCATGGGCTCCAAAATGCAGCGGTTAGAGAAAGGATaGAAGGAGCCAAAGGGTTTGCAGCCTCATAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: IMGSKMQRLEKG*KEPKGLQPHKK Trigger: CTTCTTATGAGGCTGCAAACCCTTTGGCTCCTTCAATCCTTTCTCTAACCGCTGCATTTTGGAGCCCATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACTTAAGGGAGAAATGGTaGGGAAACTTGCAGCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: VWMRLAEMPNKGERDPVDLREKW*GNLQPK Trigger: TTTGGGCTGCAAGTTTCCCCACCATTTCTCCCTTAA...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | TGTCTATCCAGGAAGGGAACTAGAATAGATAATAATGGATGGATATCAGAGGGGCCTGGCAAAGCAAGATaGTTTGAAGGGCCACTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: CLSRKGTRIDNNGWISEGPGKAR*FEGPLP Trigger: AGGAAGTGGCCCTTCAAATCATCTTGCTTTGCCAGG...CCCCTCTGATATCCATCCATTATTATCTATTCTAGTTCCCTTCCTGGATAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | GGCCACAGGGCAACACGAAATACTAGTGTACTGCTAAAGAAATATACCAACAAATGTTTTGGTCTCAGTTaGGGGCCAGCAAAGTTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GHRATRNTSVLLKKYTNKCFGLS*GPAKLG Trigger: TCCTAACTTTGCTGGCCCTCAACTGAGACCAAAACA...TTTGTTGGTATATTTCTTTAGCAGTACACTAGTATTTCGTGTTGCCCTGTGGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR GCA 90 bp | TGTCTATCCAGGAAGGGAACTAGAATAGATAATAATGGATGGATATCAGAGGGGGAGAATTGTGTATGCTaGTCTGGCCTCTGGTTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: CLSRKGTRIDNNGWISEGENCVC*SGLWLK Trigger: CTTCAACCAGAGGCCAGAGCAGCATACACAATTCTC...CCCCTCTGATATCCATCCATTATTATCTATTCTAGTTCCCTTCCTGGATAGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR GCA 90 bp | GTATGGATGAGATTAGCTGAAATGCCCAACAAAGGGGAGAGAGATCCTGTAGACCAAATTCCACTGACATaGCTCAACCATACACGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: VWMRLAEMPNKGERDPVDQIPLT*LNHTRK Trigger: TTTTCGTGTATGGTTGAGGCATGTCAGTGGAATTTG...GTCTACAGGATCTCTCTCCCCTTTGTTGGGCATTTCAGCTAATCTCATCCATAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 72 bp | CAGCGGTTAGAGAAAGGATTGAAGGAGCCAAAGGGTTaGCAGCCTCATAAGAAGAACAACAATATCAACCAA | + |
|
Preference number: 4 (lower is better) Translates to: QRLEKGLKEPKG*QPHKKNNNINQ Trigger: TTGGTTGATATTGTTGTTCTTCTTATGAGGCTGCAAACCCTTTGGCTCCTTCAATCCTTTCTCTAACCGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 72 bp | TTACGTACTCAGACCCCCATACTTTGTTTACCAGCATaGTTTCTGGTAGTGGGGAAATATCCAGTCACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: LRTQTPILCLPA*FLVVGKYPVTL Trigger: TAAGGTGACTGGATATTTCCCCACTACCAGAAACAATGCTGGTAAACAAAGTATGGGGGTCTGAGTACGTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | CAGCATGCACATATACACTCCAAGAAAATGAGAGTTTATGTACTAGACCTTCATCCTGGCAAAGCAAGATaGTTTGAAGGGCCACTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QHAHIHSKKMRVYVLDLHPGKAR*FEGPLP Trigger: AGGAAGTGGCCCTTCAAATCATCTTGCTTTGCCAGG...ATGAAGGTCTAGTACATAAACTCTCATTTTCTTGGAGTGTATATGTGCATGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | CAGCATGCACATATACACTCCAAGAAAATGAGAGTTTATGTACTAGACCTTCATCTCCCATTGGACCTGTaGATGTGTTTCAGGCTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: QHAHIHSKKMRVYVLDLHLPLDL*MCFRLW Trigger: CCAAAGCCTGAAACACATTCACAGGTCCAATGGGAG...ATGAAGGTCTAGTACATAAACTCTCATTTTCTTGGAGTGTATATGTGCATGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 72 bp | GCTTTTCAGAACCATAATGGGTTATGGCTATTAGGGTaGTGCTCAAATGGATCCCATGTGAATTCTCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: AFQNHNGLWLLG*CSNGSHVNSPK Trigger: CTTTGGAGAATTCACATGGGATCCATTTGAGCACAACCCTAATAGCCATAACCCATTATGGTTCTGAAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | CAGCATGCACATATACACTCCAAGAAAATGAGAGTTTATGTACTAGACCTTCATTGTTTTGGTCTCAGTTaGGGGCCAGCAAAGTTAGGA | + |
|
Preference number: 4 (lower is better) Translates to: QHAHIHSKKMRVYVLDLHCFGLS*GPAKLG Trigger: TCCTAACTTTGCTGGCCCTCAACTGAGACCAAAACA...ATGAAGGTCTAGTACATAAACTCTCATTTTCTTGGAGTGTATATGTGCATGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | GGCCACAGGGCAACACGAAATACTAGTGTACTGCTAAAGAAATATACCAACAAACAATGTGGGCAAGAATaGCATGTTTTGGTCTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: GHRATRNTSVLLKKYTNKQCGQE*HVLVSV Trigger: AACTGAGACCAAAACATGTCATTCTTGCCCACATTG...TTTGTTGGTATATTTCTTTAGCAGTACACTAGTATTTCGTGTTGCCCTGTGGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | GGCCACAGGGCAACACGAAATACTAGTGTACTGCTAAAGAAATATACCAACAAAACTCAAGCTTACAGTTaGGGTTATTCAGAGGATTCC | + |
|
Preference number: 4 (lower is better) Translates to: GHRATRNTSVLLKKYTNKTQAYS*GYSEDS Trigger: GGAATCCTCTGAATAACCTCAACTGTAAGCTTGAGT...TTTGTTGGTATATTTCTTTAGCAGTACACTAGTATTTCGTGTTGCCCTGTGGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | GGCCACAGGGCAACACGAAATACTAGTGTACTGCTAAAGAAATATACCAACAAATCGAGGTATTTCCTCTaGGTATCACTCTACTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: GHRATRNTSVLLKKYTNKSRYFL*VSLYSI Trigger: AATGGAGTAGAGTGATACTCAGAGGAAATACCTCGA...TTTGTTGGTATATTTCTTTAGCAGTACACTAGTATTTCGTGTTGCCCTGTGGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | GGATGGGATGTCTTCATCAAATCCTTTTCTTCAGGAGTTATAGAAGTCTTTTGGTCGAGGTATTTCCTCTaGGTATCACTCTACTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: GWDVFIKSFSSGVIEVFWSRYFL*VSLYSI Trigger: AATGGAGTAGAGTGATACTCAGAGGAAATACCTCGA...CCAAAAGACTTCTATAACTCCTGAAGAAAAGGATTTGATGAAGACATCCCATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CCA 90 bp | GGATGGGATGTCTTCATCAAATCCTTTTCTTCAGGAGTTATAGAAGTCTTTTGGTTGCCCACAGCAATGTaGGCAAGAATGACATGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: GWDVFIKSFSSGVIEVFWLPTAM*ARMTCF Trigger: AAAACATGTCATTCTTGCCCACATTGCTGTGGGCAA...CCAAAAGACTTCTATAACTCCTGAAGAAAAGGATTTGATGAAGACATCCCATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 72 bp | ATCATATTCAGCTACACTCATAGATCAGCACCTTGTTaGGCCATCATCAGAAGATTCCTTTTGCAGCAGATA | + |
|
Preference number: 4 (lower is better) Translates to: IIFSYTHRSAPC*AIIRRFLLQQI Trigger: TATCTGCTGCAAAAGGAATCTTCTGATGATGGCCAAACAAGGTGCTGATCTATGAGTGTAGCTGAATATGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR TCA 90 bp | CAGCATGCACATATACACTCCAAGAAAATGAGAGTTTATGTACTAGACCTTCATACTCAAGCTTACAGTTaGGGTTATTCAGAGGATTCC | + |
|
Preference number: 4 (lower is better) Translates to: QHAHIHSKKMRVYVLDLHTQAYS*GYSEDS Trigger: GGAATCCTCTGAATAACCTCAACTGTAAGCTTGAGT...ATGAAGGTCTAGTACATAAACTCTCATTTTCTTGGAGTGTATATGTGCATGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR GCA 90 bp | GGATGGGATGTCTTCATCAAATCCTTTTCTTCAGGAGTTATAGAAGTCTTTTGGCAAATTCCACTGACATaGCTCAACCATACACGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: GWDVFIKSFSSGVIEVFWQIPLT*LNHTRK Trigger: TTTTCGTGTATGGTTGAGGCATGTCAGTGGAATTTG...CCAAAAGACTTCTATAACTCCTGAAGAAAAGGATTTGATGAAGACATCCCATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CCA 90 bp | CAGCATGCACATATACACTCCAAGAAAATGAGAGTTTATGTACTAGACCTTCATTTGCCCACAGCAATGTaGGCAAGAATGACATGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: QHAHIHSKKMRVYVLDLHLPTAM*ARMTCF Trigger: AAAACATGTCATTCTTGCCCACATTGCTGTGGGCAA...ATGAAGGTCTAGTACATAAACTCTCATTTTCTTGGAGTGTATATGTGCATGCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 72 bp | TCAGCACCTTGTTTGGCCATCATCAGAAGATTCCTTTaGCAGCAGATAGGGACTAACAATGACTATATTTTA | + |
|
Preference number: 4 (lower is better) Translates to: SAPCLAIIRRFL*QQIGTNNDYIL Trigger: TAAAATATAGTCATTGTTAGTCCCTATCTGCTGCAAAAGGAATCTTCTGATGATGGCCAAACAAGGTGCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| 3UTR CAA 72 bp | CCCTTTACTGTTCTTAAAACCACAATGTCTTTATATTaGGCCAATACTTTTGTACTCATAGCTGCTGATTTC | + |
|
Preference number: 4 (lower is better) Translates to: PFTVLKTTMSLY*ANTFVLIAADF Trigger: GAAATCAGCAGCTATGAGTACAAAAGTATTGGCCAAATATAAAGACATTGTGGTTTTAAGAACAGTAAAGGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CAA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGAGGATAATCAAGAGATaGCCCACAGCAATGTGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: RTRAGIPKLMGHRESSAERIIKR*PTAMWA Trigger: TGCCCACATTGCTGTGGGCAATCTCTTGATTATCCT...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CAA 90 bp | AGAACGAGGGCTGGCATACCCAAGCTTATGGGACACAGAGAAAGCAGTGCTGAGTACTCAAGCTTACAGTaGAGGTTATTCAGAGGATTC | + |
|
Preference number: 5 (lower is better) Translates to: RTRAGIPKLMGHRESSAEYSSLQ*RLFRGF Trigger: GAATCCTCTGAATAACCTCAACTGTAAGCTTGAGTA...CTCAGCACTGCTTTCTCTGTGTCCCATAAGCTTGGGTATGCCAGCCCTCGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CAA 90 bp | TGTCTATCCAGGAAGGGAACTAGAATAGATAATAATGGATGGATATCAGAGGGGTTCGGGTCAGTGTCATaGTCTGTGTTCCATGGACCA | + |
|
Preference number: 5 (lower is better) Translates to: CLSRKGTRIDNNGWISEGFGSVS*SVFHGP Trigger: TGGTCCATGGAACACAGACAATGACACTGACCCGAA...CCCCTCTGATATCCATCCATTATTATCTATTCTAGTTCCCTTCCTGGATAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CCA 90 bp | GAGGTTATTCAGAGGATTCCTTGGAACAAAAACTGTCATATTGCTTaGAAACCCAGTGAGGAGGATAATCAAGAGATTGCCCACAGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: EVIQRIPWNKNCHIA*KPSEEDNQEIAHSN Trigger: ATTGCTGTGGGCAATCTCTTGATTATCCTCCTCACTGGGTTTCCAAGCAATATGACAGTTTTTGTTCCAAGGAATCCTCTGAATAACCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS-3UTR CAA 90 bp | GGATGGGATGTCTTCATCAAATCCTTTTCTTCAGGAGTTATAGAAGTCTTTTGGTACTCAAGCTTACAGTaGAGGTTATTCAGAGGATTC | + |
|
Preference number: 5 (lower is better) Translates to: GWDVFIKSFSSGVIEVFWYSSLQ*RLFRGF Trigger: GAATCCTCTGAATAACCTCAACTGTAAGCTTGAGTA...CCAAAAGACTTCTATAACTCCTGAAGAAAAGGATTTGATGAAGACATCCCATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CCA 72 bp | CACCAGCATGAGAATTGTGTATGCTGCTCTGGCCTCTaGTTGAAGTCCCAGGCTCCCATTGGACCTGTGAAT | + |
|
Preference number: 6 (lower is better) Translates to: HQHENCVCCSGL*LKSQAPIGPVN Trigger: ATTCACAGGTCCAATGGGAGCCTGGGACTTCAACCAGAGGCCAGAGCAGCATACACAATTCTCATGCTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS GCA 72 bp | GCATACAAATGTGATCACCAGCATGAGAATTGTGTATaGTGCTCTGGCCTCTGGTTGAAGTCCCAGGCTCCC | + |
|
Preference number: 6 (lower is better) Translates to: AYKCDHQHENCV*CSGLWLKSQAP Trigger: GGGAGCCTGGGACTTCAACCAGAGGCCAGAGCAGCATACACAATTCTCATGCTGGTGATCACATTTGTATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 72 bp | CACAGCTGCAATACCAACCTGGCAAAGCAAGATGATTaGAAGGGCCACTTCCTCAGTGGTTTTCAGGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: HSCNTNLAKQDD*KGHFLSGFQGF Trigger: AAAGCCCTGAAAACCACTGAGGAAGTGGCCCTTCAAATCATCTTGCTTTGCCAGGTTGGTATTGCAGCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 90 bp | AATGTTGGCCACAGCTGCAATACCAACCTGGCAAAGCAAGATGATTaGAAGGGCCACTTCCTCAGTGGTTTTCAGGGCTTTATTAAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: NVGHSCNTNLAKQDD*KGHFLSGFQGFIKS Trigger: GCTCTTAATAAAGCCCTGAAAACCACTGAGGAAGTGGCCCTTCAAATCATCTTGCTTTGCCAGGTTGGTATTGCAGCTGTGGCCAACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 90 bp | TTGAAGTCCCAGGCTCCCATTGGACCTGTGAATGTGTTTCAGGCTTaGGTGATGTCTATACAAGAGAAGCATCATGGAAACACTGGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: LKSQAPIGPVNVFQA*VMSIQEKHHGNTGP Trigger: TGGACCAGTGTTTCCATGATGCTTCTCTTGTATAGACATCACCAAAGCCTGAAACACATTCACAGGTCCAATGGGAGCCTGGGACTTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 72 bp | CAGGCTCCCATTGGACCTGTGAATGTGTTTCAGGCTTaGGTGATGTCTATACAAGAGAAGCATCATGGAAAC | + |
|
Preference number: 6 (lower is better) Translates to: QAPIGPVNVFQA*VMSIQEKHHGN Trigger: GTTTCCATGATGCTTCTCTTGTATAGACATCACCAAAGCCTGAAACACATTCACAGGTCCAATGGGAGCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 90 bp | AAGAAGACCATGACTAACTCAAAACCAGAGTTAGAACATACCCATTaGCTGTTCGGGTCAGTGTCATTGTCTGTGTTCCATGGACCACTG | + |
|
Preference number: 6 (lower is better) Translates to: KKTMTNSKPELEHTH*LFGSVSLSVFHGPL Trigger: CAGTGGTCCATGGAACACAGACAATGACACTGACCCGAACAGCAAATGGGTATGTTCTAACTCTGGTTTTGAGTTAGTCATGGTCTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS TCA 72 bp | GCAATGTGGGCAAGAATGACATGTTTTGGTCTCAGTTaGGGGCCAGCAAAGTTAGGAGATAAATTATGGACA | + |
|
Preference number: 6 (lower is better) Translates to: AMWARMTCFGLS*GPAKLGDKLWT Trigger: TGTCCATAATTTATCTCCTAACTTTGCTGGCCCTCAACTGAGACCAAAACATGTCATTCTTGCCCACATTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CCA 72 bp | CAGAGGATTCCTTGGAACAAAAACTGTCATATTGCTTaGAAACCCAGTGAGGAGGATAATCAAGAGATTGCC | + |
|
Preference number: 6 (lower is better) Translates to: QRIPWNKNCHIA*KPSEEDNQEIA Trigger: GGCAATCTCTTGATTATCCTCCTCACTGGGTTTCCAAGCAATATGACAGTTTTTGTTCCAAGGAATCCTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 72 bp | CGAGCCACCAGACGAATGAAGTACTCAAGCTTACAGTaGAGGTTATTCAGAGGATTCCTTGGAACAAAAACT | + |
|
Preference number: 6 (lower is better) Translates to: RATRRMKYSSLQ*RLFRGFLGTKT Trigger: AGTTTTTGTTCCAAGGAATCCTCTGAATAACCTCAACTGTAAGCTTGAGTACTTCATTCGTCTGGTGGCTCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 72 bp | TTAGAACATACCCATTTGCTGTTCGGGTCAGTGTCATaGTCTGTGTTCCATGGACCACTGATTTTTATAGGG | + |
|
Preference number: 6 (lower is better) Translates to: LEHTHLLFGSVS*SVFHGPLIFIG Trigger: CCCTATAAAAATCAGTGGTCCATGGAACACAGACAATGACACTGACCCGAACAGCAAATGGGTATGTTCTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 90 bp | CAGTTGAGGTTATTCAGAGGATTCCTTGGAACAAAAACTGTCATATaGCTTGGAAACCCAGTGAGGAGGATAATCAAGAGATTGCCCACA | + |
|
Preference number: 6 (lower is better) Translates to: QLRLFRGFLGTKTVI*LGNPVRRIIKRLPT Trigger: TGTGGGCAATCTCTTGATTATCCTCCTCACTGGGTTTCCAAGCAATATGACAGTTTTTGTTCCAAGGAATCCTCTGAATAACCTCAACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 72 bp | ATGACTAACTCAAAACCAGAGTTAGAACATACCCATTaGCTGTTCGGGTCAGTGTCATTGTCTGTGTTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: MTNSKPELEHTH*LFGSVSLSVFH Trigger: ATGGAACACAGACAATGACACTGACCCGAACAGCAAATGGGTATGTTCTAACTCTGGTTTTGAGTTAGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CAA 90 bp | TTTGCACTTCGAGCCACCAGACGAATGAAGTACTCAAGCTTACAGTaGAGGTTATTCAGAGGATTCCTTGGAACAAAAACTGTCATATTG | + |
|
Preference number: 6 (lower is better) Translates to: FALRATRRMKYSSLQ*RLFRGFLGTKTVIL Trigger: CAATATGACAGTTTTTGTTCCAAGGAATCCTCTGAATAACCTCAACTGTAAGCTTGAGTACTTCATTCGTCTGGTGGCTCGAAGTGCAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||
| CDS CCA 72 bp | TTTGCTGTTCGGGTCAGTGTCATTGTCTGTGTTCCATaGACCACTGATTTTTATAGGGATGTAGACATTATT | + |
|
Preference number: 6 (lower is better) Translates to: FAVRVSVIVCVP*TTDFYRDVDII Trigger: AATAATGTCTACATCCCTATAAAAATCAGTGGTCCATGGAACACAGACAATGACACTGACCCGAACAGCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000038694.9 ENSMUST00000173101.3 |
||