Pregenerated sensors for VMN1R170 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094187

Ensembl transcript IDs: ENSMUST00000170166.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GAGAGCAGGTGGAGCACATGTTTGTACTTCGAGCCACCAGCCAAATaGAGTACCCAAGTTTACATTTTAGGTCAGTTGGGGGATCCTTTG	+
Preference number: 5 (lower is better) Translates to: ESRWSTCLYFEPPAK*STQVYILGQLGDPL Trigger: CAAAGGATCCCCCAACTGACCTAAAATGTAAACTTGGGTACTTCATTTGGCTGGTGGCTCGAAGTACAAACATGTGCTCCACCTGCTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170166.2
CDS TCA 90 bp	TACAGAATGTACAAATACAGTCCAGATGATAACAGGTCACAAATGTaGCCACCAGCATCAGGATGGTGTGGGATGCTCTACTCTCAGCAT	+
Preference number: 5 (lower is better) Translates to: YRMYKYSPDDNRSQM*PPASGWCGMLYSQH Trigger: ATGCTGAGAGTAGAGCATCCCACACCATCCTGATGCTGGTGGTCACATTTGTGACCTGTTATCATCTGGACTGTATTTGTACATTCTGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170166.2
CDS GCA 72 bp	CACAAATGTGACCACCAGCATCAGGATGGTGTGGGATaGTCTACTCTCAGCATGAACTCTGAGCTTCTGATT	+
Preference number: 6 (lower is better) Translates to: HKCDHQHQDGVG*STLSMNSELLI Trigger: AATCAGAAGCTCAGAGTTCATGCTGAGAGTAGAGCATCCCACACCATCCTGATGCTGGTGGTCACATTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170166.2
CDS TCA 72 bp	GGATGGTGTGGGATGCTCTACTCTCAGCATGAACTCTaGGCTTCTGATTTGTGGATTGAATATGCTGCAGTC	+
Preference number: 6 (lower is better) Translates to: GWCGMLYSQHEL*ASDLWIEYAAV Trigger: GACTGCAGCATATTCAATCCACAAATCAGAAGCTCAGAGTTCATGCTGAGAGTAGAGCATCCCACACCATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170166.2
CDS CAA 72 bp	ACTCTCAGCATGAACTCTGAGCTTCTGATTTGTGGATaGAATATGCTGCAGTCTGTGGTGGTGTCTGTTCAG	+
Preference number: 6 (lower is better) Translates to: TLSMNSELLICG*NMLQSVVVSVQ Trigger: CTGAACAGACACCACCACAGACTGCAGCATATTCAATCCACAAATCAGAAGCTCAGAGTTCATGCTGAGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170166.2
CDS CAA 90 bp	TTAGGTCAGTTGGGGGATCCTTTGGAACAAAAAGTGTCATATTGTTaGGAAATGCAAAGAGGAGAATCAAGGTATTGCCCACAGCTAAGT	+
Preference number: 6 (lower is better) Translates to: LGQLGDPLEQKVSYC*EMQRGESRYCPQLS Trigger: ACTTAGCTGTGGGCAATACCTTGATTCTCCTCTTTGCATTTCCAAACAATATGACACTTTTTGTTCCAAAGGATCCCCCAACTGACCTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000170166.2

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