Pregenerated sensors for VMN1R166 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096073

Ensembl transcript IDs: ENSMUST00000164045.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	AAGATAGTACGGGTTGCTCTGGTCTCAGCTTGGCCTCTAGGGTTCTaGTTGGGAGTGAGGATGTCCTGCATTCGCTGGCAATGTCTATGG	+
Preference number: 5 (lower is better) Translates to: KIVRVALVSAWPLGF*LGVRMSCIRWQCLW Trigger: CCATAGACATTGCCAGCGAATGCAGGACATCCTCACTCCCAATCAGAACCCTAGAGGCCAAGCTGAGACCAGAGCAACCCGTACTATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164045.2
CDS GCA 90 bp	CTGGTCCAGATCATGATGCTCATGAATGTGGCATCATGGGCAAACTaGAAGACAATGCCTACAATGAATCCAGAAGTGGAACAGAACAAG	+
Preference number: 5 (lower is better) Translates to: LVQIMMLMNVASWAN*KTMPTMNPEVEQNK Trigger: CTTGTTCTGTTCCACTTCTGGATTCATTGTAGGCATTGTCTTGCAGTTTGCCCATGATGCCACATTCATGAGCATCATGATCTGGACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164045.2
CDS TCA 90 bp	ATAAGTTTACCTTTACCTCTACTAAGAGGAAAAAGAGTGACAAACTaGTGGATACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTT	+
Preference number: 5 (lower is better) Translates to: ISLPLPLLRGKRVTN*WILRTQVEHKFVLL Trigger: AAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCACTCTTTTTCCTCTTAGTAGAGGTAAAGGTAAACTTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164045.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu