RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R160 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094931

Ensembl transcript IDs: ENSMUST00000171745.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp ATAAAAGCTAACAAATGTGACCACCAGCATCAGGATAGTACGAGTTaGTCTGGTCTCAGCTTGGCCTCTGGGGTTCTGATTGGGAGTGAG +
Preference number: 5 (lower is better)
Translates to: IKANKCDHQHQDSTS*SGLSLASGVLIGSE
Trigger: CTCACTCCCAATCAGAACCCCAGAGGCCAAGCTGAGACCAGAGCAACTCGTACTATCCTGATGCTGGTGGTCACATTTGTTAGCTTTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS CCA 90 bp TGTCTGGGCCTCTGTTTAGAACCAGTCAAGACTGGAGAGAAATTATaGACAAACAGAAAGACATTGGCTACGGTCCCAACCCCAAACTGG +
Preference number: 5 (lower is better)
Translates to: CLGLCLEPVKTGEKL*TNRKTLATVPTPNW
Trigger: CCAGTTTGGGGTTGGGACCGTAGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCCAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS CCA 90 bp AACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACATTaGCTACGGTCCCAACCCCAAACTGGCAAAGCAAGAGGAGTTGAA +
Preference number: 5 (lower is better)
Translates to: NQSRLERNYGQTERH*LRSQPQTGKARGVE
Trigger: TTCAACTCCTCTTGCTTTGCCAGTTTGGGGTTGGGACCGTAGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS TCA 90 bp CTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTTGCCACCATGTaGCTGAAGAATTCCAATTTACATTTGAGTTCAGTTGGAGGAGTT +
Preference number: 5 (lower is better)
Translates to: LRTQVEHKFVLLATM*LKNSNLHLSSVGGV
Trigger: AACTCCTCCAACTGAACTCAAATGTAAATTGGAATTCTTCAGTCACATGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS GCA 90 bp CTGATGGATACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTTaGCACCATGTGACTGAAGAATTCCAATTTACATTTGAGTTCAGT +
Preference number: 5 (lower is better)
Translates to: LMDTQDTGGTQVCAS*HHVTEEFQFTFEFS
Trigger: ACTGAACTCAAATGTAAATTGGAATTCTTCAGTCACATGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS TCA 90 bp ATAAGTTTACCTTTACCTCTATTAACAGGAACAAGAGTGACAAACTaGTGGATACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTT +
Preference number: 5 (lower is better)
Translates to: ISLPLPLLTGTRVTN*WILRTQVEHKFVLL
Trigger: AAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCACTCTTGTTCCTGTTAATAGAGGTAAAGGTAAACTTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS TCA 72 bp CGAGTTGCTCTGGTCTCAGCTTGGCCTCTGGGGTTCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGA +
Preference number: 6 (lower is better)
Translates to: RVALVSAWPLGF*LGVRMCCIRWR
Trigger: TCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAGCTGAGACCAGAGCAACTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS GCA 72 bp AACAAATGTGACCACCAGCATCAGGATAGTACGAGTTaGTCTGGTCTCAGCTTGGCCTCTGGGGTTCTGATT +
Preference number: 6 (lower is better)
Translates to: NKCDHQHQDSTS*SGLSLASGVLI
Trigger: AATCAGAACCCCAGAGGCCAAGCTGAGACCAGAGCAACTCGTACTATCCTGATGCTGGTGGTCACATTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS CCA 72 bp GTGAGGAATAGAGTCAAGGCATTGGCCACAGCCATGTaGATTAAAATTACCTGTCTGGGCCTCTGTTTAGAA +
Preference number: 6 (lower is better)
Translates to: VRNRVKALATAM*IKITCLGLCLE
Trigger: TTCTAAACAGAGGCCCAGACAGGTAATTTTAATCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS CAA 72 bp AAGACTGGAGAGAAATTATGGACAAACAGAAAGACATaGGCTACGGTCCCAACCCCAAACTGGCAAAGCAAG +
Preference number: 6 (lower is better)
Translates to: KTGEKLWTNRKT*ATVPTPNWQSK
Trigger: CTTGCTTTGCCAGTTTGGGGTTGGGACCGTAGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS CCA 72 bp TACCTGTCTGGGCCTCTGTTTAGAACCAGTCAAGACTaGAGAGAAATTATGGACAAACAGAAAGACATTGGC +
Preference number: 6 (lower is better)
Translates to: YLSGPLFRTSQD*REIMDKQKDIG
Trigger: GCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCCAGACAGGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS TCA 72 bp CCTTTACCTCTATTAACAGGAACAAGAGTGACAAACTaGTGGATACTCAGGACACAGGTGGAACACAAGTTT +
Preference number: 6 (lower is better)
Translates to: PLPLLTGTRVTN*WILRTQVEHKF
Trigger: AAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCACTCTTGTTCCTGTTAATAGAGGTAAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS CAA 90 bp AAGAAGACCATGCCTACAATGAATCCAGAAGTGGAACAGAACAATTaGCTTTTAGAGTCAGTGTTATTGTCTGTTATCTGTGGACCAGTG +
Preference number: 6 (lower is better)
Translates to: KKTMPTMNPEVEQNN*LLESVLLSVICGPV
Trigger: CACTGGTCCACAGATAACAGACAATAACACTGACTCTAAAAGCAAATTGTTCTGTTCCACTTCTGGATTCATTGTAGGCATGGTCTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS TCA 72 bp CAGGTGGAACACAAGTTTGTGCTTCTTGCCACCATGTaGCTGAAGAATTCCAATTTACATTTGAGTTCAGTT +
Preference number: 6 (lower is better)
Translates to: QVEHKFVLLATM*LKNSNLHLSSV
Trigger: AACTGAACTCAAATGTAAATTGGAATTCTTCAGTCACATGGTGGCAAGAAGCACAAACTTGTGTTCCACCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2
CDS CAA 72 bp TTGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATaGGCCACAGCCATGTGGATTAAAATTACCTGTCTG +
Preference number: 6 (lower is better)
Translates to: LFGNIVRNRVKA*ATAMWIKITCL
Trigger: CAGACAGGTAATTTTAATCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171745.2