Pregenerated sensors for VMN1R16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115792Ensembl transcript IDs: ENSMUST00000227168.2, ENSMUST00000227283.2, ENSMUST00000228356.2
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATGAAACACATTCCAGCTGCATATGTAGCAGAGGATGGCTTAGTTaGTCATTAATGTCATTAATGGGAGGAGAGGCCCTTGGTCCTGTG | + |
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Preference number: 1 (lower is better) Translates to: NETHSSCICSRGWLS*SLMSLMGGEALGPV Trigger: CACAGGACCAAGGGCCTCTCCTCCCATTAATGACATTAATGACCAACTAAGCCATCCTCTGCTACATATGCAGCTGGAATGTGTTTCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR CCA 90 bp | GGCAATCAGTTCTATCTAATTGAGTTGTTGATTAAATGGGCTCTATaGGAACCTCCAAACAACCCAAGGTATTGTGAAAGCTGTTGTATG | + |
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Preference number: 1 (lower is better) Translates to: GNQFYLIELLIKWAL*EPPNNPRYCESCCM Trigger: CATACAACAGCTTTCACAATACCTTGGGTTGTTTGGAGGTTCCCATAGAGCCCATTTAATCAACAACTCAATTAGATAGAACTGATTGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR CCA 90 bp | TTCAGTACTGGCAATCAGTTCTATCTAATTGAGTTGTTGATTAAATaGGCTCTATGGGAACCTCCAAACAACCCAAGGTATTGTGAAAGC | + |
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Preference number: 1 (lower is better) Translates to: FSTGNQFYLIELLIK*ALWEPPNNPRYCES Trigger: GCTTTCACAATACCTTGGGTTGTTTGGAGGTTCCCATAGAGCCCATTTAATCAACAACTCAATTAGATAGAACTGATTGCCAGTACTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR GCA 90 bp | AATCTTCAGCCTACAGTGGTGTGTCATTCCTATAAGAAGTGCTCATaGAATAGTAGGTCGAATCTGTTTGGTTTAAAGCATGAAATCCAT | + |
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Preference number: 1 (lower is better) Translates to: NLQPTVVCHSYKKCS*NSRSNLFGLKHEIH Trigger: ATGGATTTCATGCTTTAAACCAAACAGATTCGACCTACTATTGCATGAGCACTTCTTATAGGAATGACACACCACTGTAGGCTGAAGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR GCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGCCCAGTGTAGGGAAATaGCAGGGCCAGGAAGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: NGRPGHPLIHMQLETGAPPSVGK*QGQEAG Trigger: TCCTGCTTCCTGGCCCTGGCATTTCCCTACACTGGG...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCAGGGGAAGGCACAGCAAAACAATATGGGATACCACCTCCCATATATTAGACCCACTTCCTGGCCCTaGCATTCCCCTGCACTGAGG | + |
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Preference number: 2 (lower is better) Translates to: CQGKAQQNNMGYHLPYIRPTSWP*HSPALR Trigger: CCTCAGTGCAGGGGAATGCCAGGGCCAGGAAGTGGG...TCTAATATATGGGAGGTGGTATCCCATATTGTTTTGCTGTGCCTTCCCCTGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR CCA 90 bp | ATTAGGTACTTCCTTCATTCACATCTCCAATGTTATCCCAAAAGTCCCCCACACCCCACTTCCTGGCCCTaGCATTCCCCTGCACTGAGG | + |
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Preference number: 2 (lower is better) Translates to: IRYFLHSHLQCYPKSPPHPTSWP*HSPALR Trigger: CCTCAGTGCAGGGGAATGCCAGGGCCAGGAAGTGGG...GTGTGGGGGACTTTTGGGATAACATTGGAGATGTGAATGAAGGAAGTACCTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR TCA 90 bp | CGCATAGGGTTGCAGTTCCCCTCAGCTCCTTGGGTACTCTCTCTAGCTCCTCCAAGACAAAACCCCAAATaGAATCCTTCATCACCAATG | + |
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Preference number: 2 (lower is better) Translates to: RIGLQFPSAPWVLSLAPPRQNPK*NPSSPM Trigger: CATTGGTGATGAAGGATTTCATTTGGGGTTTTGTCT...TGGAGGAGCTAGAGAGAGTACCCAAGGAGCTGAGGGGAACTGCAACCCTATGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR CCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGGAGTTGTTGATTAAATaGGCTCTATGGGAACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: NGRPGHPLIHMQLETGAPELLIK*ALWEPP Trigger: TGGAGGTTCCCATAGAGCCCATTTAATCAACAACTC...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR TCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGGGTGTAGGCACTGCATaGATGAGTATTATAGTTACT | + |
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Preference number: 2 (lower is better) Translates to: NGRPGHPLIHMQLETGAPGVGTA*MSIIVT Trigger: AGTAACTATAATACTCATTCATGCAGTGCCTACACC...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR TCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGGGCCAGCTGTACATCTaGGAATATCCTAAATTACTA | + |
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Preference number: 2 (lower is better) Translates to: NGRPGHPLIHMQLETGAPGQLYI*EYPKLL Trigger: TAGTAATTTAGGATATTCTCAGATGTACAGCTGGCC...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR GCA 90 bp | CGCATAGGGTTGCAGTTCCCCTCAGCTCCTTGGGTACTCTCTCTAGCTCCTCCATACTGGAAGGAAACATaGATACTACCAAAGGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: RIGLQFPSAPWVLSLAPPYWKET*ILPKEK Trigger: TTTCTCCTTTGGTAGTATGCATGTTTCCTTCCAGTA...TGGAGGAGCTAGAGAGAGTACCCAAGGAGCTGAGGGGAACTGCAACCCTATGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR GCA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGGAAACACATTCCAGCTaGATATGTAGCAGAGGATGG | + |
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Preference number: 2 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEETHSS*ICSRGW Trigger: CCATCCTCTGCTACATATGCAGCTGGAATGTGTTTC...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR CCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGATGTCCTGCAGTAGATaGACAACACAAAACAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: NGRPGHPLIHMQLETGAPMSCSR*TTQNSL Trigger: AAGACTGTTTTGTGTTGTCCATCTACTGCAGGACAT...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR CAA 90 bp | CCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTaGCCAGGCTCCAGCATAGTCTCACAAGAGACAGCTATACTTTCT | + |
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Preference number: 2 (lower is better) Translates to: PVIHPIADCEHPLLC*PGSSIVSQETAILS Trigger: AGAAAGTATAGCTGTCTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR GCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGACTGGGAATATACAATaGATGCATGCTGACACAATA | + |
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Preference number: 2 (lower is better) Translates to: NGRPGHPLIHMQLETGAPTGNIQ*MHADTI Trigger: TATTGTGTCAGCATGCATGCATTGTATATTCCCAGT...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR CCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGAGAGGATGGCTTAGTTaGTCATTAATGTCATTAATG | + |
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Preference number: 2 (lower is better) Translates to: NGRPGHPLIHMQLETGAPRGWLS*SLMSLM Trigger: CATTAATGACATTAATGACCAACTAAGCCATCCTCT...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR TCA 90 bp | GGATGGCTTAGTTGGTCATTAATGTCATTAATGGGAGGAGAGGCCCTTGGTCCTAGACAAAACCCCAAATaGAATCCTTCATCACCAATG | + |
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Preference number: 2 (lower is better) Translates to: GWLSWSLMSLMGGEALGPRQNPK*NPSSPM Trigger: CATTGGTGATGAAGGATTTCATTTGGGGTTTTGTCT...AGGACCAAGGGCCTCTCCTCCCATTAATGACATTAATGACCAACTAAGCCATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR GCA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGATAAGGTTATATAGCTaGAGCCACAGATCTTTTACA | + |
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Preference number: 2 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEIRLYS*SHRSFT Trigger: TGTAAAAGATCTGTGGCTGCAGCTATATAACCTTAT...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR GCA 90 bp | ATTAGGTACTTCCTTCATTCACATCTCCAATGTTATCCCAAAAGTCCCCCACACGAACTGTTTGGGGTGTaGCTGTGTTGTCCTAGAGTA | + |
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Preference number: 2 (lower is better) Translates to: IRYFLHSHLQCYPKSPPHELFGV*LCCPRV Trigger: TACTCTAGGACAACACAGGCACACCCCAAACAGTTC...GTGTGGGGGACTTTTGGGATAACATTGGAGATGTGAATGAAGGAAGTACCTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR CAA 90 bp | ATGAAGGTGGTGACTACTACAGACTTCACTCCTGTGGATCAGAATTaGTGGTACTGGAAGGAAACATGCATACTACCAAAGGAGAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: MKVVTTTDFTPVDQN*WYWKETCILPKEKG Trigger: ACCTTTCTCCTTTGGTAGTATGCATGTTTCCTTCCAGTACCACAAATTCTGATCCACAGGAGTGAAGTCTGTAGTAGTCACCACCTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR GCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAGCCCTGGCATTCCCCTaGACTGAGGCATATAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLALAFP*TEAYKV Trigger: GACTTTATATGCCTCAGTGCAGGGGAATGCCAGGGC...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR GCA 90 bp | TTCTCCACAGAGTACAAGGAATTCTGTGGAAAGGGTGGTAGAAAGACTAGAATACTCCTGGCCTCCATGTaGACATATACACACATCCTT | + |
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Preference number: 2 (lower is better) Translates to: FSTEYKEFCGKGGRKTRILLASM*TYTHIL Trigger: AAGGATGTGTGTATATGTGCACATGGAGGCCAGGAG...TATTCTAGTCTTTCTACCACCCTTTCCACAGAATTCCTTGTACTCTGTGGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTCCACAGAGTACAAGGAATTCTGTGGAAAGGGTGGTAGAAAGACTAGAATAATGACACAAGGTGAATaGAGTGTGAGGAACAACAGC | + |
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Preference number: 2 (lower is better) Translates to: FSTEYKEFCGKGGRKTRIMTQGE*SVRNNS Trigger: GCTGTTGTTCCTCACACTCCATTCACCTTGTGTCAT...TATTCTAGTCTTTCTACCACCCTTTCCACAGAATTCCTTGTACTCTGTGGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR CAA 90 bp | ACCAATGAAGCTTTCAGTACTGGCAATCAGTTCTATCTAATTGAGTaGTTGATTAAATGGGCTCTATGGGAACCTCCAAACAACCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: TNEAFSTGNQFYLIE*LIKWALWEPPNNPR Trigger: CCTTGGGTTGTTTGGAGGTTCCCATAGAGCCCATTTAATCAACAACTCAATTAGATAGAACTGATTGCCAGTACTGAAAGCTTCATTGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR TCA 90 bp | CCACAGATCTTTTACAAAGATACTAACAATATACACTGGAGAAGGGTCAGATGTAAGGTGAATGGAGTGTaGGGAACAACAGCCAAGGTT | + |
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Preference number: 2 (lower is better) Translates to: PQIFYKDTNNIHWRRVRCKVNGV*GTTAKV Trigger: AACCTTGGCTGTTGTTCCTCACACTCCATTCACCTT...ACATCTGACCCTTCTCCAGTGTATATTGTTAGTATCTTTGTAAAAGATCTGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR GCA 90 bp | AGTATTACTCATTGTCAGGGGAAGGCACAGCAAAACAATATGGGATACCACCTCTACTGGAAGGAAACATaGATACTACCAAAGGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: SITHCQGKAQQNNMGYHLYWKET*ILPKEK Trigger: TTTCTCCTTTGGTAGTATGCATGTTTCCTTCCAGTA...GAGGTGGTATCCCATATTGTTTTGCTGTGCCTTCCCCTGACAATGAGTAATACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR GCA 90 bp | AATGACAGTTCACAGAATGGGAGGAAAATCTGGGCCAGCTGTACATCTGAGAATGATTGGTGTAGGCACTaGATGAATGAGTATTATAGT | + |
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Preference number: 2 (lower is better) Translates to: NDSSQNGRKIWASCTSENDWCRH*MNEYYS Trigger: ACTATAATACTCATTCATGCAGTGCCTACACCAATC...ATTCTCAGATGTACAGCTGGCCCAGATTTTCCTCCCATTCTGTGAACTGTCATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTCCACAGAGTACAAGGAATTCTGTGGAAAGGGTGGTAGAAAGACTAGAATAGTGGATCAGAATTTGTaGTACTGGAAGGAAACATGC | + |
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Preference number: 2 (lower is better) Translates to: FSTEYKEFCGKGGRKTRIVDQNL*YWKETC Trigger: GCATGTTTCCTTCCAGTACCACAAATTCTGATCCAC...TATTCTAGTCTTTCTACCACCCTTTCCACAGAATTCCTTGTACTCTGTGGAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTCCACAGAGTACAAGGAATTCTGTGGAAAGGGTGGTAGAAAGACTAGAATAGAGTTGTTGATTAAATaGGCTCTATGGGAACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: FSTEYKEFCGKGGRKTRIELLIK*ALWEPP Trigger: TGGAGGTTCCCATAGAGCCCATTTAATCAACAACTC...TATTCTAGTCTTTCTACCACCCTTTCCACAGAATTCCTTGTACTCTGTGGAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR TCA 90 bp | TTCTCCACAGAGTACAAGGAATTCTGTGGAAAGGGTGGTAGAAAGACTAGAATAGGCCAGCTGTACATCTaGGAATATCCTAAATTACTA | + |
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Preference number: 2 (lower is better) Translates to: FSTEYKEFCGKGGRKTRIGQLYI*EYPKLL Trigger: TAGTAATTTAGGATATTCTCAGATGTACAGCTGGCC...TATTCTAGTCTTTCTACCACCCTTTCCACAGAATTCCTTGTACTCTGTGGAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR CAA 90 bp | AATGAAGCTTTCAGTACTGGCAATCAGTTCTATCTAATTGAGTTGTaGATTAAATGGGCTCTATGGGAACCTCCAAACAACCCAAGGTAT | + |
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Preference number: 2 (lower is better) Translates to: NEAFSTGNQFYLIEL*IKWALWEPPNNPRY Trigger: ATACCTTGGGTTGTTTGGAGGTTCCCATAGAGCCCATTTAATCAACAACTCAATTAGATAGAACTGATTGCCAGTACTGAAAGCTTCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAGTGGATCAGAATTTGTaGTACTGGAAGGAAACATGC | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLVDQNL*YWKETC Trigger: GCATGTTTCCTTCCAGTACCACAAATTCTGATCCAC...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAGGTGTAGGCACTGCATaGATGAGTATTATAGTTACT | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLGVGTA*MSIIVT Trigger: AGTAACTATAATACTCATTCATGCAGTGCCTACACC...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTATATAATGACACAAGGTaGATGGAGTGTGAGGAACAA | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLYNDTR*MECEEQ Trigger: TTGTTCCTCACACTCCATTCACCTTGTGTCATTATA...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAATAAGTAACTCAATTTaGGAAGGGGATCTAAACAGG | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLISNSI*EGDLNR Trigger: CCTGTTTAGATCCCCTTCTCAAATTGAGTTACTTAT...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAATAGCTATCTCCCTTTaGAGCCACTTGCAAATAAAA | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLIAISL*SHLQIK Trigger: TTTTATTTGCAAGTGGCTTCAAAGGGAGATAGCTAT...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR GCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAGATTGGTGTAGGCACTaGATGAATGAGTATTATAGT | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLDWCRH*MNEYYS Trigger: ACTATAATACTCATTCATGCAGTGCCTACACCAATC...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTACAGAATTTGTGGTACTaGAAGGAAACATGCATACTA | + |
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Preference number: 2 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLQNLWY*KETCIL Trigger: TAGTATGCATGTTTCCTTCCAGTACCACAAATTCTG...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR GCA 72 bp | GGTCCTGTGAAGTCTCTATGCCCCAGTGTAGGGAAATaGCAGGGCCAGGAAGCAGGAGTGGGAGGATTGGTG | + |
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Preference number: 3 (lower is better) Translates to: GPVKSLCPSVGK*QGQEAGVGGLV Trigger: CACCAATCCTCCCACTCCTGCTTCCTGGCCCTGGCATTTCCCTACACTGGGGCATAGAGACTTCACAGGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR CAA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGGTTCCCCTCAGCTCCTaGGGTACTCTCTCTAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: NGRPGHPLIHMQLETGAPVPLSS*GTLSSS Trigger: GGAGCTAGAGAGAGTACCCAAGGAGCTGAGGGGAAC...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR CAA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGGTTCCACGCATAGGGTaGCAGTTCCCCTCAGCTCCT | + |
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Preference number: 3 (lower is better) Translates to: NGRPGHPLIHMQLETGAPVPRIG*QFPSAP Trigger: AGGAGCTGAGGGGAACTGCAACCCTATGCGTGGAAC...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR-3UTR CAA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGGAACAACAGCCAAGGTaGTCTCCTGGCCTCCATGTG | + |
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Preference number: 3 (lower is better) Translates to: NGRPGHPLIHMQLETGAPEQQPR*SPGLHV Trigger: CACATGGAGGCCAGGAGACAACCTTGGCTGTTGTTC...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
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| 3UTR-3UTR CAA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGCCTGTGGATCAGAATTaGTGGTACTGGAAGGAAACA | + |
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Preference number: 3 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEPVDQN*WYWKET Trigger: TGTTTCCTTCCAGTACCACAAATTCTGATCCACAGG...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
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| 3UTR GCA 72 bp | AGGAACAACAGCCAAGGTTGTCTCCTGGCCTCCATGTaGACATATACACACATCCTTCAGCTGTACACACAT | + |
|
Preference number: 3 (lower is better) Translates to: RNNSQGCLLASM*TYTHILQLYTH Trigger: ATGTGTGTACAGCTGAAGGATGTGTGTATATGTGCACATGGAGGCCAGGAGACAACCTTGGCTGTTGTTCCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR GCA 72 bp | ATGGACATGCATATAAACTCAGAGACTGTGGCAACATaGACAGGAACTGTTTGGGGTGTGCCTGTGTTGTCC | + |
|
Preference number: 3 (lower is better) Translates to: MDMHINSETVAT*TGTVWGVPVLS Trigger: GGACAACACAGGCACACCCCAAACAGTTCCTGTGCATGTTGCCACAGTCTCTGAGTTTATATGCATGTCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CCA 72 bp | TTGGTCATTAATGTCATTAATGGGAGGAGAGGCCCTTaGTCCTGTGAAGTCTCTATGCCCCAGTGTAGGGAA | + |
|
Preference number: 3 (lower is better) Translates to: LVINVINGRRGP*SCEVSMPQCRE Trigger: TTCCCTACACTGGGGCATAGAGACTTCACAGGACCAAGGGCCTCTCCTCCCATTAATGACATTAATGACCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR-3UTR CAA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGGTCTTTAGTGATCCTTaGCCTATATACTATGACTTC | + |
|
Preference number: 3 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEVFSDP*PIYYDF Trigger: GAAGTCATAGTATATAGGCAAAGGATCACTAAAGAC...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CCA 72 bp | CATTCCAGCTGCATATGTAGCAGAGGATGGCTTAGTTaGTCATTAATGTCATTAATGGGAGGAGAGGCCCTT | + |
|
Preference number: 3 (lower is better) Translates to: HSSCICSRGWLS*SLMSLMGGEAL Trigger: AAGGGCCTCTCCTCCCATTAATGACATTAATGACCAACTAAGCCATCCTCTGCTACATATGCAGCTGGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR TCA 72 bp | ATCATAGACAGAGAGATCCTCTATAATGACACAAGGTaGATGGAGTGTGAGGAACAACAGCCAAGGTTGTCT | + |
|
Preference number: 3 (lower is better) Translates to: IIDREILYNDTR*MECEEQQPRLS Trigger: AGACAACCTTGGCTGTTGTTCCTCACACTCCATTCACCTTGTGTCATTATAGAGGATCTCTCTGTCTATGAT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CCA 72 bp | ACAGACTTCACTCCTGTGGATCAGAATTTGTGGTACTaGAAGGAAACATGCATACTACCAAAGGAGAAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: TDFTPVDQNLWY*KETCILPKEKG Trigger: ACCTTTCTCCTTTGGTAGTATGCATGTTTCCTTCCAGTACCACAAATTCTGATCCACAGGAGTGAAGTCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| 3UTR CCA 72 bp | ACTACTACAGACTTCACTCCTGTGGATCAGAATTTGTaGTACTGGAAGGAAACATGCATACTACCAAAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: TTTDFTPVDQNL*YWKETCILPKE Trigger: CTCCTTTGGTAGTATGCATGTTTCCTTCCAGTACCACAAATTCTGATCCACAGGAGTGAAGTCTGTAGTAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| 3UTR-3UTR CAA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTACCTGTGGATCAGAATTaGTGGTACTGGAAGGAAACA | + |
|
Preference number: 3 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLPVDQN*WYWKET Trigger: TGTTTCCTTCCAGTACCACAAATTCTGATCCACAGG...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| 3UTR GCA 72 bp | CCTACAGTGGTGTGTCATTCCTATAAGAAGTGCTCATaGAATAGTAGGTCGAATCTGTTTGGTTTAAAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: PTVVCHSYKKCS*NSRSNLFGLKH Trigger: ATGCTTTAAACCAAACAGATTCGACCTACTATTGCATGAGCACTTCTTATAGGAATGACACACCACTGTAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CCA 72 bp | GGCAATCAGTTCTATCTAATTGAGTTGTTGATTAAATaGGCTCTATGGGAACCTCCAAACAACCCAAGGTAT | + |
|
Preference number: 3 (lower is better) Translates to: GNQFYLIELLIK*ALWEPPNNPRY Trigger: ATACCTTGGGTTGTTTGGAGGTTCCCATAGAGCCCATTTAATCAACAACTCAATTAGATAGAACTGATTGCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| 3UTR CCA 72 bp | AATGAAACACATTCCAGCTGCATATGTAGCAGAGGATaGCTTAGTTGGTCATTAATGTCATTAATGGGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: NETHSSCICSRG*LSWSLMSLMGG Trigger: TCCTCCCATTAATGACATTAATGACCAACTAAGCCATCCTCTGCTACATATGCAGCTGGAATGTGTTTCATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CCA 72 bp | CACATAGTGAGAGACATTAAGACAGTCAACCCTGTATaGAAAGTCTCCATAAAATTCTTCTCCACAGAGTAC | + |
|
Preference number: 3 (lower is better) Translates to: HIVRDIKTVNPV*KVSIKFFSTEY Trigger: GTACTCTGTGGAGAAGAATTTTATGGAGACTTTCCATACAGGGTTGACTGTCTTAATGTCTCTCACTATGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR-3UTR CAA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAATGAAATCCATGAGATaGAAACCATACCCAGCACTG | + |
|
Preference number: 3 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLMKSMR*KPYPAL Trigger: CAGTGCTGGGTATGGTTTCAATCTCATGGATTTCAT...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR TCA 72 bp | GGAGACAAAACCCCAAATGAAATCCTTCATCACCAATaGAGCTTTCAGTACTGGCAATCAGTTCTATCTAAT | + |
|
Preference number: 3 (lower is better) Translates to: GDKTPNEILHHQ*SFQYWQSVLSN Trigger: ATTAGATAGAACTGATTGCCAGTACTGAAAGCTTCATTGGTGATGAAGGATTTCATTTGGGGTTTTGTCTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | CGCATAGGGTTGCAGTTCCCCTCAGCTCCTTGGGTACTCTCTCTAGCTCCTCCAAGGTGCCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: RIGLQFPSAPWVLSLAPPRCLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGGCACCT...TGGAGGAGCTAGAGAGAGTACCCAAGGAGCTGAGGGGAACTGCAACCCTATGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | CGCATAGGGTTGCAGTTCCCCTCAGCTCCTTGGGTACTCTCTCTAGCTCCTCCAGTTCATGGGGAAGAGTaGGCAGGATTTAGTGACCTT | + |
|
Preference number: 4 (lower is better) Translates to: RIGLQFPSAPWVLSLAPPVHGEE*AGFSDL Trigger: AAGGTCACTAAATCCTGCTCACTCTTCCCCATGAAC...TGGAGGAGCTAGAGAGAGTACCCAAGGAGCTGAGGGGAACTGCAACCCTATGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGATGCTCTCAGGTGCCTaGTGCTATGAAGATGCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: NGRPGHPLIHMQLETGAPMLSGA*CYEDAC Trigger: GCAAGCATCTTCATAGCATCAGGCACCTGAGAGCAT...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR CCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGAGCAGTAAGATGGTCTaGGTGGCTCTTTTCTCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: NGRPGHPLIHMQLETGAPSSKMV*VALFSG Trigger: ACCTGAGAAAAGAGCCACCCAGACCATCTTACTGCT...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | GGATGGCTTAGTTGGTCATTAATGTCATTAATGGGAGGAGAGGCCCTTGGTCCTGGCTCTTTTCTCAGGTaGTGCTCTCAGGTGCCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: GWLSWSLMSLMGGEALGPGSFLR*CSQVPD Trigger: ATCAGGCACCTGAGAGCATCACCTGAGAAAAGAGCC...AGGACCAAGGGCCTCTCCTCCCATTAATGACATTAATGACCAACTAAGCCATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| CDS-3UTR GCA 90 bp | CGCATAGGGTTGCAGTTCCCCTCAGCTCCTTGGGTACTCTCTCTAGCTCCTCCAGATATTCAACATGTATaGGCTTGTAGTCAGCATGAC | + |
|
Preference number: 4 (lower is better) Translates to: RIGLQFPSAPWVLSLAPPDIQHV*ACSQHD Trigger: GTCATGCTGACTACAAGCGCATACATGTTGAATATC...TGGAGGAGCTAGAGAGAGTACCCAAGGAGCTGAGGGGAACTGCAACCCTATGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| 3UTR CAA 72 bp | CACTGGTTAGTTCATATTGTTGTTCCACGCATAGGGTaGCAGTTCCCCTCAGCTCCTTGGGTACTCTCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: HWLVHIVVPRIG*QFPSAPWVLSL Trigger: TAGAGAGAGTACCCAAGGAGCTGAGGGGAACTGCAACCCTATGCGTGGAACAACAATATGAACTAACCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGAAATATCCCCTCCAGTaGGGAACATTATTATGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: NGRPGHPLIHMQLETGAPKYPLQ*GTLLCE Trigger: TTCACATAATAATGTTCCTCACTGGAGGGGATATTT...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | TGTCAGGGGAAGGCACAGCAAAACAATATGGGATACCACCTCCCATATATTAGAGGCTCTTTTCTCAGGTaGTGCTCTCAGGTGCCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: CQGKAQQNNMGYHLPYIRGSFLR*CSQVPD Trigger: ATCAGGCACCTGAGAGCATCACCTGAGAAAAGAGCC...TCTAATATATGGGAGGTGGTATCCCATATTGTTTTGCTGTGCCTTCCCCTGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR GCA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGTGGAGGTGCTTTGACTaGCTGTTTTTCAACATAGTT | + |
|
Preference number: 4 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEWRCFD*LFFNIV Trigger: AACTATGTTGAAAAACAGGCAGTCAAAGCACCTCCA...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| CDS-3UTR TCA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGAAATATCCCCTCCAGTaGGGAACATTATTATGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEKYPLQ*GTLLCE Trigger: TTCACATAATAATGTTCCTCACTGGAGGGGATATTT...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | ATTAGGTACTTCCTTCATTCACATCTCCAATGTTATCCCAAAAGTCCCCCACACATGCTCTCAGGTGCCTaGTGCTATGAAGATGCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: IRYFLHSHLQCYPKSPPHMLSGA*CYEDAC Trigger: GCAAGCATCTTCATAGCATCAGGCACCTGAGAGCAT...GTGTGGGGGACTTTTGGGATAACATTGGAGATGTGAATGAAGGAAGTACCTAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | AGTATTACTCATTGTCAGGGGAAGGCACAGCAAAACAATATGGGATACCACCTCTACATCACAAACTTCTaGACTGTCAGGACTACTGGG | + |
|
Preference number: 4 (lower is better) Translates to: SITHCQGKAQQNNMGYHLYITNF*TVRTTG Trigger: CCCAGTAGTCCTGACAGTTCAGAAGTTTGTGATGTA...GAGGTGGTATCCCATATTGTTTTGCTGTGCCTTCCCCTGACAATGAGTAATACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| CDS-3UTR CCA 90 bp | GACTTCACTCCTGTGGATCAGAATTTGTGGTACTGGAAGGAAACATGCATACTAAGCAGTAAGATGGTCTaGGTGGCTCTTTTCTCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: DFTPVDQNLWYWKETCILSSKMV*VALFSG Trigger: ACCTGAGAAAAGAGCCACCCAGACCATCTTACTGCT...TAGTATGCATGTTTCCTTCCAGTACCACAAATTCTGATCCACAGGAGTGAAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR GCA 90 bp | TGGTCATTAATGTCATTAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGTCTCTAAAAACATTCTGGAGGTaGTTTGACTGCCTGTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: WSLMSLMGGEALGPVKSLKTFWR*FDCLFF Trigger: GAAAAACAGGCAGTCAAAGCACCTCCAGAATGTTTT...TAGAGACTTCACAGGACCAAGGGCCTCTCCTCCCATTAATGACATTAATGACCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CAA 72 bp | GTGACTACTACAGACTTCACTCCTGTGGATCAGAATTaGTGGTACTGGAAGGAAACATGCATACTACCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: VTTTDFTPVDQN*WYWKETCILPK Trigger: CTTTGGTAGTATGCATGTTTCCTTCCAGTACCACAAATTCTGATCCACAGGAGTGAAGTCTGTAGTAGTCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | GACTTCACTCCTGTGGATCAGAATTTGTGGTACTGGAAGGAAACATGCATACTAAAATTTTGCCAACAGTaGTGTACTGGGGCTGATTGT | + |
|
Preference number: 4 (lower is better) Translates to: DFTPVDQNLWYWKETCILKFCQQ*CTGADC Trigger: ACAATCAGCCCCAGTACATCACTGTTGGCAAAATTT...TAGTATGCATGTTTCCTTCCAGTACCACAAATTCTGATCCACAGGAGTGAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | CCACAGATCTTTTACAAAGATACTAACAATATACACTGGAGAAGGGTCAGATGTAGGTGCCTGATGCTATaGAGATGCTTGCATTGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: PQIFYKDTNNIHWRRVRCRCLML*RCLHCL Trigger: GAGGCAATGCAAGCATCTTCATAGCATCAGGCACCT...ACATCTGACCCTTCTCCAGTGTATATTGTTAGTATCTTTGTAAAAGATCTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR GCA 90 bp | TTCTCCACAGAGTACAAGGAATTCTGTGGAAAGGGTGGTAGAAAGACTAGAATAGATATTCAACATGTATaGGCTTGTAGTCAGCATGAC | + |
|
Preference number: 4 (lower is better) Translates to: FSTEYKEFCGKGGRKTRIDIQHV*ACSQHD Trigger: GTCATGCTGACTACAAGCGCATACATGTTGAATATC...TATTCTAGTCTTTCTACCACCCTTTCCACAGAATTCCTTGTACTCTGTGGAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CAA 72 bp | GCTTTCAGTACTGGCAATCAGTTCTATCTAATTGAGTaGTTGATTAAATGGGCTCTATGGGAACCTCCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: AFSTGNQFYLIE*LIKWALWEPPN Trigger: GTTTGGAGGTTCCCATAGAGCCCATTTAATCAACAACTCAATTAGATAGAACTGATTGCCAGTACTGAAAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | ACAAAGGGAGGGACAGCTAAATCTAAGGAATATTTAAGGGGTCATATGAAACTAAAATTTTGCCAACAGTaGTGTACTGGGGCTGATTGT | + |
|
Preference number: 4 (lower is better) Translates to: TKGGTAKSKEYLRGHMKLKFCQQ*CTGADC Trigger: ACAATCAGCCCCAGTACATCACTGTTGGCAAAATTT...TAGTTTCATATGACCCCTTAAATATTCCTTAGATTTAGCTGTCCCTCCCTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR TCA 90 bp | CCACAGATCTTTTACAAAGATACTAACAATATACACTGGAGAAGGGTCAGATGTATTCTGGAGGTGCTTTaGCTGCCTGTTTTTCAACAT | + |
|
Preference number: 4 (lower is better) Translates to: PQIFYKDTNNIHWRRVRCILEVL*LPVFQH Trigger: ATGTTGAAAAACAGGCAGTCAAAGCACCTCCAGAAT...ACATCTGACCCTTCTCCAGTGTATATTGTTAGTATCTTTGTAAAAGATCTGTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| 3UTR CAA 72 bp | TTCAGTACTGGCAATCAGTTCTATCTAATTGAGTTGTaGATTAAATGGGCTCTATGGGAACCTCCAAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: FSTGNQFYLIEL*IKWALWEPPNN Trigger: GTTGTTTGGAGGTTCCCATAGAGCCCATTTAATCAACAACTCAATTAGATAGAACTGATTGCCAGTACTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR CAA 90 bp | AATGGCCGACCAGGCCATCCTCTGATACATATGCAGCTAGAGACAGGAGCTCCGCATTCTGGAGGTGCTTaGACTGCCTGTTTTTCAACA | + |
|
Preference number: 5 (lower is better) Translates to: NGRPGHPLIHMQLETGAPHSGGA*TACFST Trigger: TGTTGAAAAACAGGCAGTCAAAGCACCTCCAGAATG...CGGAGCTCCTGTCTCTAGCTGCATATGTATCAGAGGATGGCCTGGTCGGCCATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227283.2 |
||
| CDS-3UTR CAA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGGTGAACAAAGGTCAGTaGACAGGAGATCAGGTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEVNKGQ*TGDQVC Trigger: ACAGACCTGATCTCCTGTCAACTGACCTTTGTTCAC...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS-3UTR CAA 90 bp | GACTGTGAGCATCCACTTCTGTGTTTGCCAGGCTCCAGCATAGTCTCACAAGAGATGAAATCCATGAGATaGAAACCATACCCAGCACTG | + |
|
Preference number: 5 (lower is better) Translates to: DCEHPLLCLPGSSIVSQEMKSMR*KPYPAL Trigger: CAGTGCTGGGTATGGTTTCAATCTCATGGATTTCAT...CTCTTGTGAGACTATGCTGGAGCCTGGCAAACACAGAAGTGGATGCTCACAGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228356.2 |
||
| CDS-3UTR CAA 90 bp | ATTAGGTACTTCCTTCATTCACATCTCCAATGTTATCCCAAAAGTCCCCCACACGTGAACAAAGGTCAGTaGACAGGAGATCAGGTCTGT | + |
|
Preference number: 5 (lower is better) Translates to: IRYFLHSHLQCYPKSPPHVNKGQ*TGDQVC Trigger: ACAGACCTGATCTCCTGTCAACTGACCTTTGTTCAC...GTGTGGGGGACTTTTGGGATAACATTGGAGATGTGAATGAAGGAAGTACCTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000227283.2 ENSMUST00000228356.2 |
||
| CDS CAA 72 bp | TCCAGTGAGGAACATTATTATGTGAACAAAGGTCAGTaGACAGGAGATCAGGTCTGTGGGTTTAGGTCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: SSEEHYYVNKGQ*TGDQVCGFRSV Trigger: CACAGACCTAAACCCACAGACCTGATCTCCTGTCAACTGACCTTTGTTCACATAATAATGTTCCTCACTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000227168.2 ENSMUST00000227283.2 ENSMUST00000228356.2 |
||