Pregenerated sensors for VMN1R158 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094700Ensembl transcript IDs: ENSMUST00000174643.2
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | AGGATAGTACGGGTTGCTCTGGACTCAGCTTGGCCTCTGGCGTCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATGG | + |
Preference number: 5 (lower is better) Translates to: RIVRVALDSAWPLAS*LGVRMCCIRWRCLW Trigger: CCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGTCCAGAGCAACCCGTACTATCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS TCA 90 bp | ACAAGTTTACCTTTCCCTCTATTAAGAGGAACCAGAGTGACAAACTaGTGGAAACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTT | + |
Preference number: 5 (lower is better) Translates to: TSLPFPLLRGTRVTN*WKLRTQVEHKFVLL Trigger: AAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTTTCCATCAGTTTGTCACTCTGGTTCCTCTTAATAGAGGGAAAGGTAAACTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS TCA 90 bp | AGTGCCTACACTGAATCCAGAAGTGGAACAGAACAACTTTCTGTTTaGGTCAGTGTTATTGTCTTTTATCTGTGGACCACTGACCTTAAT | + |
Preference number: 5 (lower is better) Translates to: SAYTESRSGTEQLSV*VSVIVFYLWTTDLN Trigger: ATTAAGGTCAGTGGTCCACAGATAAAAGACAATAACACTGACTCAAACAGAAAGTTGTTCTGTTCCACTTCTGGATTCAGTGTAGGCACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS TCA 72 bp | CGGGTTGCTCTGGACTCAGCTTGGCCTCTGGCGTCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGA | + |
Preference number: 6 (lower is better) Translates to: RVALDSAWPLAS*LGVRMCCIRWR Trigger: TCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGTCCAGAGCAACCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS CCA 72 bp | CACCTGTCTGGGCCTCTGTTTAGAACCAGTCAAGACTaGAGAGAAATTACGGACAAACAGAAAGACTTTGGC | + |
Preference number: 6 (lower is better) Translates to: HLSGPLFRTSQD*REITDKQKDFG Trigger: GCCAAAGTCTTTCTGTTTGTCCGTAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCCAGACAGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS TCA 72 bp | CCTTTCCCTCTATTAAGAGGAACCAGAGTGACAAACTaGTGGAAACTCAGGACACAGGTGGAACACAAGTTT | + |
Preference number: 6 (lower is better) Translates to: PFPLLRGTRVTN*WKLRTQVEHKF Trigger: AAACTTGTGTTCCACCTGTGTCCTGAGTTTCCATCAGTTTGTCACTCTGGTTCCTCTTAATAGAGGGAAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS TCA 72 bp | CATCATAGGCAAACTGCAAGAGGACAGTGCCTACACTaGATCCAGAAGTGGAACAGAACAACTTTCTGTTTG | + |
Preference number: 6 (lower is better) Translates to: HHRQTARGQCLH*IQKWNRTTFCL Trigger: CAAACAGAAAGTTGTTCTGTTCCACTTCTGGATTCAGTGTAGGCACTGTCCTCTTGCAGTTTGCCTATGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS TCA 72 bp | CAGGTGGAACACAAGTTTGTGCTTCTTGCCACCAGGTaGCTGAAGGATTCTAATTTACATTTGAGTTCAGTT | + |
Preference number: 6 (lower is better) Translates to: QVEHKFVLLATR*LKDSNLHLSSV Trigger: AACTGAACTCAAATGTAAATTAGAATCCTTCAGTCACCTGGTGGCAAGAAGCACAAACTTGTGTTCCACCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS TCA 72 bp | ACTGAATCCAGAAGTGGAACAGAACAACTTTCTGTTTaGGTCAGTGTTATTGTCTTTTATCTGTGGACCACT | + |
Preference number: 6 (lower is better) Translates to: TESRSGTEQLSV*VSVIVFYLWTT Trigger: AGTGGTCCACAGATAAAAGACAATAACACTGACTCAAACAGAAAGTTGTTCTGTTCCACTTCTGGATTCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |
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CDS CAA 72 bp | GTGGAACAGAACAACTTTCTGTTTGAGTCAGTGTTATaGTCTTTTATCTGTGGACCACTGACCTTAATTGGA | + |
Preference number: 6 (lower is better) Translates to: VEQNNFLFESVL*SFICGPLTLIG Trigger: TCCAATTAAGGTCAGTGGTCCACAGATAAAAGACAATAACACTGACTCAAACAGAAAGTTGTTCTGTTCCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174643.2 |