Pregenerated sensors for VMN1R157 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095619

Ensembl transcript IDs: ENSMUST00000178215.2

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	AACCAGTCAAGACTGGAGAGAAATTATGGACAAATAGAAAGACATTaGCCACGGTCCCAACCTCAAAATGGCAAAGCAAGAGGATCTGAA	+
Preference number: 5 (lower is better) Translates to: NQSRLERNYGQIERH*PRSQPQNGKARGSE Trigger: TTCAGATCCTCTTGCTTTGCCATTTTGAGGTTGGGACCGTGGCCAATGTCTTTCTATTTGTCCATAATTTCTCTCCAGTCTTGACTGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178215.2
CDS CCA 72 bp	CATTGGCCACAGCCATGTGGCTTAAAATCACCTGTCTaGGCCTCTGTTTATAACCAGTCAAGACTGGAGAGA	+
Preference number: 6 (lower is better) Translates to: HWPQPCGLKSPV*ASVYNQSRLER Trigger: TCTCTCCAGTCTTGACTGGTTATAAACAGAGGCCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178215.2
CDS TCA 72 bp	ACGGTCCCAACCTCAAAATGGCAAAGCAAGAGGATCTaGAGAGCCACTTCCTCAGTGGTTTTCACGGATTTA	+
Preference number: 6 (lower is better) Translates to: TVPTSKWQSKRI*RATSSVVFTDL Trigger: TAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGATCCTCTTGCTTTGCCATTTTGAGGTTGGGACCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178215.2
CDS CAA 72 bp	AAGACTGGAGAGAAATTATGGACAAATAGAAAGACATaGGCCACGGTCCCAACCTCAAAATGGCAAAGCAAG	+
Preference number: 6 (lower is better) Translates to: KTGEKLWTNRKT*ATVPTSKWQSK Trigger: CTTGCTTTGCCATTTTGAGGTTGGGACCGTGGCCAATGTCTTTCTATTTGTCCATAATTTCTCTCCAGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178215.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu