RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VMN1R15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115199

Ensembl transcript IDs: ENSMUST00000228297.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAACTAGAGTCATCTGAAACTGTAGTTTCCAGGGGAAACCTCTTCTaGCTTCTGTGCATATTAGGAATGCAGCCATACATACATGCTAGT +
Preference number: 1 (lower is better)
Translates to: QLESSETVVSRGNLF*LLCILGMQPYIHAS
Trigger: ACTAGCATGTATGTATGGCTGCATTCCTAATATGCACAGAAGTCAGAAGAGGTTTCCCCTGGAAACTACAGTTTCAGATGACTCTAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
3UTR CAA 90 bp GATCTAGTTACAGATGGTTGTGAGCCACCATGTGGTTGCCGGGATTaGAACTCCGGACCTTCGGAAGAGCAGTCGGCGTCTCTTACCCAT +
Preference number: 2 (lower is better)
Translates to: DLVTDGCEPPCGCRD*NSGPSEEQSASLTH
Trigger: ATGGGTAAGAGACGCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCGGCAACCACATGGTGGCTCACAACCATCTGTAACTAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
3UTR-3UTR TCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTTCACCAGCCCATAAGTaGACCATTTTTAAAGGAGGA +
Preference number: 2 (lower is better)
Translates to: THTITGTIPIWQLESSETSPAHK*TIFKGG
Trigger: TCCTCCTTTAAAAATGGTTCACTTATGGGCTGGTGA...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
3UTR TCA 72 bp CAGATGGTTGTGAGCCACCATGTGGTTGCCGGGATTTaGACTCCGGACCTTCGGAAGAGCAGTCGGCGTCTC +
Preference number: 3 (lower is better)
Translates to: QMVVSHHVVAGI*TPDLRKSSRRL
Trigger: GAGACGCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCGGCAACCACATGGTGGCTCACAACCATCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
3UTR TCA 72 bp TCATCTGAAACTGTAGTTTCCAGGGGAAACCTCTTCTaGCTTCTGTGCATATTAGGAATGCAGCCATACATA +
Preference number: 3 (lower is better)
Translates to: SSETVVSRGNLF*LLCILGMQPYI
Trigger: TATGTATGGCTGCATTCCTAATATGCACAGAAGTCAGAAGAGGTTTCCCCTGGAAACTACAGTTTCAGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
3UTR CCA 72 bp ACACACACACACACAATTACTGGGACTATACCAATATaGCAACTAGAGTCATCTGAAACTGTAGTTTCCAGG +
Preference number: 3 (lower is better)
Translates to: THTHTITGTIPI*QLESSETVVSR
Trigger: CCTGGAAACTACAGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGTGTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
3UTR CAA 72 bp ACAGATGGTTGTGAGCCACCATGTGGTTGCCGGGATTaGAACTCCGGACCTTCGGAAGAGCAGTCGGCGTCT +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCRD*NSGPSEEQSAS
Trigger: AGACGCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCGGCAACCACATGGTGGCTCACAACCATCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR TCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTGTTCATGGGGAAGAGTaGGCAGGATTTAGTGACTTT +
Preference number: 4 (lower is better)
Translates to: THTITGTIPIWQLESSETVHGEE*AGFSDF
Trigger: AAAGTCACTAAATCCTGCTCACTCTTCCCCATGAAC...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR CCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTGAAGAAGAAACACATTaGGTAGGACTCCAAACCCAG +
Preference number: 4 (lower is better)
Translates to: THTITGTIPIWQLESSETEEETH*VGLQTQ
Trigger: CTGGGTTTGGAGTCCTACCCAATGTGTTTCTTCTTC...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR GCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTTGTGGTCAGCATGACTaGTACAAGAAACACATCTCT +
Preference number: 4 (lower is better)
Translates to: THTITGTIPIWQLESSETCGQHD*YKKHIS
Trigger: AGAGATGTGTTTCTTGTAGCAGTCATGCTGACCACA...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
3UTR CAA 72 bp GAGGCTTTCAATGTCACTATCAGTCTGAAGCTTCTGTaGAATAACCTCAGCATCAAGGTCACTTCTATGATA +
Preference number: 4 (lower is better)
Translates to: EAFNVTISLKLL*NNLSIKVTSMI
Trigger: TATCATAGAAGTGACCTTGATGCTGAGGTTATTCAACAGAAGCTTCAGACTGATAGTGACATTGAAAGCCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR GCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTAAACCCAAATATGTCTaGGAGCCAAATATTTCCTCC +
Preference number: 4 (lower is better)
Translates to: THTITGTIPIWQLESSETKPKYV*EPNISS
Trigger: GGAGGAAATATTTGGCTCGCAGACATATTTGGGTTT...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR TCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTTGTTTGTATTGTCTCTaGTGCCTGTGCAAAATATTC +
Preference number: 4 (lower is better)
Translates to: THTITGTIPIWQLESSETCLYCL*CLCKIF
Trigger: GAATATTTTGCACAGGCATCAGAGACAATACAAACA...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR TCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTAATCCACCCAGTACATaGCTACAAAGAAAACTACTA +
Preference number: 4 (lower is better)
Translates to: THTITGTIPIWQLESSETNPPST*LQRKLL
Trigger: TAGTAGTTTTCTTTGTAGTCATGTACTGGGTGGATT...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR GCA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTTTTCTGTTTAAATTTTaGCAGCATAGAGGTACTGGG +
Preference number: 4 (lower is better)
Translates to: THTITGTIPIWQLESSETFLFKF*QHRGTG
Trigger: CCCAGTACCTCTATGCTGGCAAAATTTAAACAGAAA...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR CAA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTGTGAACCAAAGTCAGTaGACAGGAGATCAGGTCTGT +
Preference number: 5 (lower is better)
Translates to: THTITGTIPIWQLESSETVNQSQ*TGDQVC
Trigger: ACAGACCTGATCTCCTGTCAACTGACTTTGGTTCAC...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR CAA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTGACTCCAAACCCAGCTaGGAAATAAAGGACATTCTC +
Preference number: 5 (lower is better)
Translates to: THTITGTIPIWQLESSETDSKPS*EIKDIL
Trigger: GAGAATGTCCTTTATTTCCAAGCTGGGTTTGGAGTC...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR CAA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTAGAAGAAGAAACACATaGGGTAGGACTCCAAACCCA +
Preference number: 5 (lower is better)
Translates to: THTITGTIPIWQLESSETRRRNT*GRTPNP
Trigger: TGGGTTTGGAGTCCTACCCAATGTGTTTCTTCTTCT...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR CAA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTATGAAGATGTTTGTATaGTCTCTGATGCCTGTGCAA +
Preference number: 5 (lower is better)
Translates to: THTITGTIPIWQLESSETMKMFV*SLMPVQ
Trigger: TTGCACAGGCATCAGAGACAATACAAACATCTTCAT...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS-3UTR CAA 90 bp ACACACACAATTACTGGGACTATACCAATATGGCAACTAGAGTCATCTGAAACTCTCTCGTTACCCTACTaGTATAAAAAGTTGCTTTAC +
Preference number: 5 (lower is better)
Translates to: THTITGTIPIWQLESSETLSLPY*YKKLLY
Trigger: GTAAAGCAACTTTTTATACAAGTAGGGTAACGAGAG...AGTTTCAGATGACTCTAGTTGCCATATTGGTATAGTCCCAGTAATTGTGTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS GCA 72 bp ATGGGGAAGAGTGAGCAGGATTTAGTGACTTTCACCTaGTTGGTCTCACTGACATTGGTAAAACCACCAACA +
Preference number: 6 (lower is better)
Translates to: MGKSEQDLVTFT*LVSLTLVKPPT
Trigger: TGTTGGTGGTTTTACCAATGTCAGTGAGACCAAGCAGGTGAAAGTCACTAAATCCTGCTCACTCTTCCCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS CAA 72 bp TCCAGTGAGGAACATGATTATGTGAACCAAAGTCAGTaGACAGGAGATCAGGTCTGTGGGTTTAGGTCTGTG +
Preference number: 6 (lower is better)
Translates to: SSEEHDYVNQSQ*TGDQVCGFRSV
Trigger: CACAGACCTAAACCCACAGACCTGATCTCCTGTCAACTGACTTTGGTTCACATAATCATGTTCCTCACTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS CAA 72 bp GGGAAGAGTGAGCAGGATTTAGTGACTTTCACCTGCTaGGTCTCACTGACATTGGTAAAACCACCAACAAAG +
Preference number: 6 (lower is better)
Translates to: GKSEQDLVTFTC*VSLTLVKPPTK
Trigger: CTTTGTTGGTGGTTTTACCAATGTCAGTGAGACCAAGCAGGTGAAAGTCACTAAATCCTGCTCACTCTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS CAA 90 bp AGTGAGCAGGATTTAGTGACTTTCACCTGCTTGGTCTCACTGACATaGGTAAAACCACCAACAAAGAAAAGCATGTTACTACAAACAGAC +
Preference number: 6 (lower is better)
Translates to: SEQDLVTFTCLVSLT*VKPPTKKSMLLQTD
Trigger: GTCTGTTTGTAGTAACATGCTTTTCTTTGTTGGTGGTTTTACCAATGTCAGTGAGACCAAGCAGGTGAAAGTCACTAAATCCTGCTCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2
CDS CAA 72 bp GATTTAGTGACTTTCACCTGCTTGGTCTCACTGACATaGGTAAAACCACCAACAAAGAAAAGCATGTTACTA +
Preference number: 6 (lower is better)
Translates to: DLVTFTCLVSLT*VKPPTKKSMLL
Trigger: TAGTAACATGCTTTTCTTTGTTGGTGGTTTTACCAATGTCAGTGAGACCAAGCAGGTGAAAGTCACTAAATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228297.2