Pregenerated sensors for VMN1R149 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094542

Ensembl transcript IDs: ENSMUST00000165916.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGGTTGCTCTGGACTCAGCTTGGCCTCTGGCGTCCTGATTGGGAGTaGGGATGTGCTGCATTCGCTGGCAATGTCTATGGAGGAGAAGTA	+
Preference number: 5 (lower is better) Translates to: GLLWTQLGLWRPDWE*GCAAFAGNVYGGEV Trigger: TACTTCTCCTCCATAGACATTGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGTCCAGAGCAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS TCA 90 bp	AGGATAGTACGGGTTGCTCTGGACTCAGCTTGGCCTCTGGCGTCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCAATGTCTATGG	+
Preference number: 5 (lower is better) Translates to: RIVRVALDSAWPLAS*LGVRMCCIRWQCLW Trigger: CCATAGACATTGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGTCCAGAGCAACCCGTACTATCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS CCA 90 bp	GAGTTCAGTTGGAGGTGTTTTGGGAGCAAAAGCCATCATGTTGTTTaGAAATATAGTGAGGAATCGAGTCAAGGCATTGGCCACAGCCAT	+
Preference number: 5 (lower is better) Translates to: EFSWRCFGSKSHHVV*KYSEESSQGIGHSH Trigger: ATGGCTGTGGCCAATGCCTTGACTCGATTCCTCACTATATTTCCAAACAACATGATGGCTTTTGCTCCCAAAACACCTCCAACTGAACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS TCA 90 bp	AATGCCTACACTGAATCCAGAAGTGGAACAGAACAACTTTCTGTTTaGGTCAGTGTTATTGTTTGTTATCTGTGGACCACTGACCTTAAT	+
Preference number: 5 (lower is better) Translates to: NAYTESRSGTEQLSV*VSVIVCYLWTTDLN Trigger: ATTAAGGTCAGTGGTCCACAGATAACAAACAATAACACTGACTCAAACAGAAAGTTGTTCTGTTCCACTTCTGGATTCAGTGTAGGCATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS TCA 72 bp	CGGGTTGCTCTGGACTCAGCTTGGCCTCTGGCGTCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCAA	+
Preference number: 6 (lower is better) Translates to: RVALDSAWPLAS*LGVRMCCIRWQ Trigger: TTGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGTCCAGAGCAACCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS CCA 72 bp	GTGAGGAATCGAGTCAAGGCATTGGCCACAGCCATGTaGCTTAAAATCACCTGTCTGGGCCTCTGTTTAGAA	+
Preference number: 6 (lower is better) Translates to: VRNRVKALATAM*LKITCLGLCLE Trigger: TTCTAAACAGAGGCCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCGATTCCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS CAA 72 bp	AAGACTGGAGAGAAATTACGGACAAACAGAAAGACATaGGCCACAGTTCCAACCCCAAACTGGCAAAGCAAG	+
Preference number: 6 (lower is better) Translates to: KTGEKLRTNRKT*ATVPTPNWQSK Trigger: CTTGCTTTGCCAGTTTGGGGTTGGAACTGTGGCCAATGTCTTTCTGTTTGTCCGTAATTTCTCTCCAGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS CAA 72 bp	TTGTTTGGAAATATAGTGAGGAATCGAGTCAAGGCATaGGCCACAGCCATGTGGCTTAAAATCACCTGTCTG	+
Preference number: 6 (lower is better) Translates to: LFGNIVRNRVKA*ATAMWLKITCL Trigger: CAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCGATTCCTCACTATATTTCCAAACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS CAA 90 bp	CATTTGAGTTCAGTTGGAGGTGTTTTGGGAGCAAAAGCCATCATGTaGTTTGGAAATATAGTGAGGAATCGAGTCAAGGCATTGGCCACA	+
Preference number: 6 (lower is better) Translates to: HLSSVGGVLGAKAIM*FGNIVRNRVKALAT Trigger: TGTGGCCAATGCCTTGACTCGATTCCTCACTATATTTCCAAACAACATGATGGCTTTTGCTCCCAAAACACCTCCAACTGAACTCAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS TCA 72 bp	CATCATAGGCAAACTGCAAGAGGACAATGCCTACACTaGATCCAGAAGTGGAACAGAACAACTTTCTGTTTG	+
Preference number: 6 (lower is better) Translates to: HHRQTARGQCLH*IQKWNRTTFCL Trigger: CAAACAGAAAGTTGTTCTGTTCCACTTCTGGATTCAGTGTAGGCATTGTCCTCTTGCAGTTTGCCTATGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS CAA 72 bp	TCAGTTGGAGGTGTTTTGGGAGCAAAAGCCATCATGTaGTTTGGAAATATAGTGAGGAATCGAGTCAAGGCA	+
Preference number: 6 (lower is better) Translates to: SVGGVLGAKAIM*FGNIVRNRVKA Trigger: TGCCTTGACTCGATTCCTCACTATATTTCCAAACAACATGATGGCTTTTGCTCCCAAAACACCTCCAACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS CAA 72 bp	GTGGAACAGAACAACTTTCTGTTTGAGTCAGTGTTATaGTTTGTTATCTGTGGACCACTGACCTTAATTGGA	+
Preference number: 6 (lower is better) Translates to: VEQNNFLFESVL*FVICGPLTLIG Trigger: TCCAATTAAGGTCAGTGGTCCACAGATAACAAACAATAACACTGACTCAAACAGAAAGTTGTTCTGTTCCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165916.2
CDS TCA 72 bp	TTTGTTATCTGTGGACCACTGACCTTAATTGGAATGTaGATGTTACTTAAGACACTGAAAAACCAACAACTG	+
Preference number: 6 (lower is better) Translates to: FVICGPLTLIGM*MLLKTLKNQQL Trigger: CAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATTCACATTCCAATTAAGGTCAGTGGTCCACAGATAACAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165916.2

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