Pregenerated sensors for VMN1R148 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095543Ensembl transcript IDs: ENSMUST00000177774.3
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGTCTGGGCCTCTGTTTAGAACCAGTCAAGACTGGAGAGAAATTATaGACAAACAGAAAGACATTGGCCACGGTCCCAATCCCAAACTGG | + |
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Preference number: 5 (lower is better) Translates to: CLGLCLEPVKTGEKL*TNRKTLATVPIPNW Trigger: CCAGTTTGGGATTGGGACCGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCCAGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CCA 90 bp | ATGGAGACACTGGTCCAGACCATGATGCTCATGAATGTGGCATCATaGGAAAACTGCAAGAAGACAATGCCTACAATGAATCCAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: METLVQTMMLMNVAS*ENCKKTMPTMNPEV Trigger: CACTTCTGGATTCATTGTAGGCATTGTCTTCTTGCAGTTTTCCCATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CCA 90 bp | AACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACATTaGCCACGGTCCCAATCCCAAACTGGCAAAGCAAAAGGATCTGAA | + |
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Preference number: 5 (lower is better) Translates to: NQSRLERNYGQTERH*PRSQSQTGKAKGSE Trigger: TTCAGATCCTTTTGCTTTGCCAGTTTGGGATTGGGACCGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS GCA 90 bp | AAACCAACAACTGTAGCAAGAATAATTCGCAAAATTTGGGACACTTaGTCTGAGTATAAGTTTACCTTTACCTCTATTAACAGGAACAAG | + |
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Preference number: 5 (lower is better) Translates to: KPTTVARIIRKIWDT*SEYKFTFTSINRNK Trigger: CTTGTTCCTGTTAATAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTGTCCCAAATTTTGCGAATTATTCTTGCTACAGTTGTTGGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CCA 90 bp | GACACTGAAAAACCAACAACTGTAGCAAGAATAATTCGCAAAATTTaGGACACTTGCTCTGAGTATAAGTTTACCTTTACCTCTATTAAC | + |
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Preference number: 5 (lower is better) Translates to: DTEKPTTVARIIRKI*DTCSEYKFTFTSIN Trigger: GTTAATAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTGTCCCAAATTTTGCGAATTATTCTTGCTACAGTTGTTGGTTTTTCAGTGTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS TCA 72 bp | TGGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCATCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGA | + |
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Preference number: 6 (lower is better) Translates to: WVALVSAWPLAS*LGVRMCCIRWR Trigger: TCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGATGCCAGAGGCCAAGCTGAGACCAGAGCAACCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CAA 90 bp | TGTGACCACCAACATCAGGATAGTATGGGTTGCTCTGGTCTCAGCTaGGCCTCTGGCATCCTGATTGGGAGTGAGGATGTGCTGCATTCG | + |
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Preference number: 6 (lower is better) Translates to: CDHQHQDSMGCSGLS*ASGILIGSEDVLHS Trigger: CGAATGCAGCACATCCTCACTCCCAATCAGGATGCCAGAGGCCAAGCTGAGACCAGAGCAACCCATACTATCCTGATGTTGGTGGTCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CCA 72 bp | AAGCTAACAAATGTGACCACCAACATCAGGATAGTATaGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCATCC | + |
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Preference number: 6 (lower is better) Translates to: KLTNVTTNIRIV*VALVSAWPLAS Trigger: GGATGCCAGAGGCCAAGCTGAGACCAGAGCAACCCATACTATCCTGATGTTGGTGGTCACATTTGTTAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS GCA 72 bp | AACAAATGTGACCACCAACATCAGGATAGTATGGGTTaGTCTGGTCTCAGCTTGGCCTCTGGCATCCTGATT | + |
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Preference number: 6 (lower is better) Translates to: NKCDHQHQDSMG*SGLSLASGILI Trigger: AATCAGGATGCCAGAGGCCAAGCTGAGACCAGAGCAACCCATACTATCCTGATGTTGGTGGTCACATTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS TCA 72 bp | ACGGTCCCAATCCCAAACTGGCAAAGCAAAAGGATCTaGAGAGCCACTTCCTCAGTGGTTTTCACGGATTTA | + |
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Preference number: 6 (lower is better) Translates to: TVPIPNWQSKRI*RATSSVVFTDL Trigger: TAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGATCCTTTTGCTTTGCCAGTTTGGGATTGGGACCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CCA 72 bp | CTGGTCCAGACCATGATGCTCATGAATGTGGCATCATaGGAAAACTGCAAGAAGACAATGCCTACAATGAAT | + |
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Preference number: 6 (lower is better) Translates to: LVQTMMLMNVAS*ENCKKTMPTMN Trigger: ATTCATTGTAGGCATTGTCTTCTTGCAGTTTTCCCATGATGCCACATTCATGAGCATCATGGTCTGGACCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CAA 72 bp | AAGACTGGAGAGAAATTATGGACAAACAGAAAGACATaGGCCACGGTCCCAATCCCAAACTGGCAAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: KTGEKLWTNRKT*ATVPIPNWQSK Trigger: TTTGCTTTGCCAGTTTGGGATTGGGACCGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CAA 90 bp | CATTTGAGTTCAGTTGGAGGAGTTTTGGGAGCAAAAGCACTCATGTaGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATTGGCCACA | + |
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Preference number: 6 (lower is better) Translates to: HLSSVGGVLGAKALM*FGNIVRNRVKALAT Trigger: TGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAACATGAGTGCTTTTGCTCCCAAAACTCCTCCAACTGAACTCAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS TCA 72 bp | CCTTTACCTCTATTAACAGGAACAAGAGTGACAAACTaGTGGACACTCAGGACACAGGTGGAACACAAATTT | + |
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Preference number: 6 (lower is better) Translates to: PLPLLTGTRVTN*WTLRTQVEHKF Trigger: AAATTTGTGTTCCACCTGTGTCCTGAGTGTCCATCAGTTTGTCACTCTTGTTCCTGTTAATAGAGGTAAAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CCA 72 bp | AAACCAACAACTGTAGCAAGAATAATTCGCAAAATTTaGGACACTTGCTCTGAGTATAAGTTTACCTTTACC | + |
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Preference number: 6 (lower is better) Translates to: KPTTVARIIRKI*DTCSEYKFTFT Trigger: GGTAAAGGTAAACTTATACTCAGAGCAAGTGTCCCAAATTTTGCGAATTATTCTTGCTACAGTTGTTGGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CCA 72 bp | TCTATTATCTGTGGAACAGTGACCTTAATTGGAATGTaGATGTTACTTAAGACACTGAAAAACCAACAACTG | + |
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Preference number: 6 (lower is better) Translates to: SIICGTVTLIGM*MLLKTLKNQQL Trigger: CAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGTTCCACAGATAATAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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| CDS CAA 72 bp | ATGCCTACAATGAATCCAGAAGTGGAACAGAACAAGTaGCTTTTAGAGTCAGTGTTATTGTCTATTATCTGT | + |
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Preference number: 6 (lower is better) Translates to: MPTMNPEVEQNK*LLESVLLSIIC Trigger: ACAGATAATAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGTAGGCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177774.3 |
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