Pregenerated sensors for VMN1R129 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094879

Ensembl transcript IDs: ENSMUST00000165961.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTGGTCCAGACCATGATGCTCATGAATGTGGCATCATACGCAAACTaGAAGAAGACAATGCCCACACTGAATCCAGAAGTGGAACAGAAC	+
Preference number: 5 (lower is better) Translates to: LVQTMMLMNVASYAN*KKTMPTLNPEVEQN Trigger: GTTCTGTTCCACTTCTGGATTCAGTGTGGGCATTGTCTTCTTGCAGTTTGCGTATGATGCCACATTCATGAGCATCATGGTCTGGACCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165961.2
CDS CCA 72 bp	GTGAGGAATAGAGTCAAGGCATTGGCCACAGCCATGTaGCTTAAAATCACCTGTCTTGGCCTCTGTTTAGAA	+
Preference number: 6 (lower is better) Translates to: VRNRVKALATAM*LKITCLGLCLE Trigger: TTCTAAACAGAGGCCAAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165961.2
CDS CCA 72 bp	AAGCTAACAAATGTAAACACCAGCATCAGGATAGTATaGGTTGCTTTGGACTCAGCTTGGCCTCTGGGGTTC	+
Preference number: 6 (lower is better) Translates to: KLTNVNTSIRIV*VALDSAWPLGF Trigger: GAACCCCAGAGGCCAAGCTGAGTCCAAAGCAACCCATACTATCCTGATGCTGGTGTTTACATTTGTTAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165961.2
CDS GCA 72 bp	ACCATGATGCTCATGAATGTGGCATCATACGCAAACTaGAAGAAGACAATGCCCACACTGAATCCAGAAGTG	+
Preference number: 6 (lower is better) Translates to: TMMLMNVASYAN*KKTMPTLNPEV Trigger: CACTTCTGGATTCAGTGTGGGCATTGTCTTCTTGCAGTTTGCGTATGATGCCACATTCATGAGCATCATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165961.2
CDS CCA 72 bp	CACCTGTCTTGGCCTCTGTTTAGAACCAGTCAAGACTaGGGAGAAATTATGGACAAACAGAAAGACATTGGC	+
Preference number: 6 (lower is better) Translates to: HLSWPLFRTSQD*GEIMDKQKDIG Trigger: GCCAATGTCTTTCTGTTTGTCCATAATTTCTCCCCAGTCTTGACTGGTTCTAAACAGAGGCCAAGACAGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165961.2
CDS TCA 72 bp	CATCATACGCAAACTGCAAGAAGACAATGCCCACACTaGATCCAGAAGTGGAACAGAACAGCTTTCTTTTCG	+
Preference number: 6 (lower is better) Translates to: HHTQTARRQCPH*IQKWNRTAFFS Trigger: CGAAAAGAAAGCTGTTCTGTTCCACTTCTGGATTCAGTGTGGGCATTGTCTTCTTGCAGTTTGCGTATGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165961.2
CDS CCA 72 bp	CTTTCTTTTCGAGTCAGTGTTATTGTCTGTTATCTGTaGACCACTGAACTTAATTGGAATGTGAATGTTACT	+
Preference number: 6 (lower is better) Translates to: LSFRVSVIVCYL*TTELNWNVNVT Trigger: AGTAACATTCACATTCCAATTAAGTTCAGTGGTCCACAGATAACAGACAATAACACTGACTCGAAAAGAAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165961.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu