Pregenerated sensors for VMN1R125 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095309Ensembl transcript IDs: ENSMUST00000098739.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCGTCCTGATTGGGAGTaGGGATGTGCTGCATTCGCTGGCGATGTCTATGGAGGAGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: GLLWSQLGLWRPDWE*GCAAFAGDVYGGEV Trigger: TACTTCTCCTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGACCAGAGCAACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098739.3 |
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| CDS TCA 90 bp | AGGATAGTATGGGTTGCTCTGGTCTCAGCTTGGCCTCTGGCGTCCTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATGG | + |
|
Preference number: 5 (lower is better) Translates to: RIVWVALVSAWPLAS*LGVRMCCIRWRCLW Trigger: CCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAGCTGAGACCAGAGCAACCCATACTATCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098739.3 |
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| CDS TCA 72 bp | TGGCCACGGTCCCAATCCCAAACTGACAAAGCAAAATaGTCTGAAGAGCCACTTCCTCAGTGGTTTTCATGG | + |
|
Preference number: 6 (lower is better) Translates to: WPRSQSQTDKAK*SEEPLPQWFSW Trigger: CCATGAAAACCACTGAGGAAGTGGCTCTTCAGATCATTTTGCTTTGTCAGTTTGGGATTGGGACCGTGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098739.3 |
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| CDS CAA 90 bp | CATTTGAGTTCAGTTGGAGGAGTTTTGCGAGCAAAAGCACTCATGTaGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATTGGCCACA | + |
|
Preference number: 6 (lower is better) Translates to: HLSSVGGVLRAKALM*FGNIVRNRVKALAT Trigger: TGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAACATGAGTGCTTTTGCTCGCAAAACTCCTCCAACTGAACTCAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098739.3 |
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| CDS GCA 72 bp | ACTGTAGCAAGAATAATTCGCAAAATTTGGGACACTTaGTCTGAGTATAAGTTTACCTTTACCTCTATTAAC | + |
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Preference number: 6 (lower is better) Translates to: TVARIIRKIWDT*SEYKFTFTSIN Trigger: GTTAATAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTGTCCCAAATTTTGCGAATTATTCTTGCTACAGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098739.3 |
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