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Pregenerated sensors for VMN1R124 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094221

Ensembl transcript IDs: ENSMUST00000105200.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GGTTTTCTCTGGTCTCAGCTTGGCCTCTGGGGTTCTGATTGGGAGTaGGGATGTGCTGCATTCGCTGGCGATGTCTATGGAGGAGAAGTA +
Preference number: 5 (lower is better)
Translates to: GFLWSQLGLWGSDWE*GCAAFAGDVYGGEV
Trigger: TACTTCTCCTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAGCTGAGACCAGAGAAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CCA 90 bp TGTCTGGGTCTCTGTTTAGAACCAGTCAAGACTGGAGAGAAATTATaGACAAACAGAAAGACATTGGCCAGGGTCCCAACCCCAAACTGG +
Preference number: 5 (lower is better)
Translates to: CLGLCLEPVKTGEKL*TNRKTLARVPTPNW
Trigger: CCAGTTTGGGGTTGGGACCCTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGACCCAGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CCA 90 bp AACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACATTaGCCAGGGTCCCAACCCCAAACTGGCAAAGCAAGAGGATCTGAA +
Preference number: 5 (lower is better)
Translates to: NQSRLERNYGQTERH*PGSQPQTGKARGSE
Trigger: TTCAGATCCTCTTGCTTTGCCAGTTTGGGGTTGGGACCCTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CAA 90 bp TGTGACCACCAGCATCAGGATAGTACGGTTTTCTCTGGTCTCAGCTaGGCCTCTGGGGTTCTGATTGGGAGTGAGGATGTGCTGCATTCG +
Preference number: 6 (lower is better)
Translates to: CDHQHQDSTVFSGLS*ASGVLIGSEDVLHS
Trigger: CGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAGCTGAGACCAGAGAAAACCGTACTATCCTGATGCTGGTGGTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS TCA 72 bp AGGGTCCCAACCCCAAACTGGCAAAGCAAGAGGATCTaGAGAGCCACTTCCTCAGTGGTTTTCACGGATTTA +
Preference number: 6 (lower is better)
Translates to: RVPTPNWQSKRI*RATSSVVFTDL
Trigger: TAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGATCCTCTTGCTTTGCCAGTTTGGGGTTGGGACCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CAA 72 bp AAGACTGGAGAGAAATTATGGACAAACAGAAAGACATaGGCCAGGGTCCCAACCCCAAACTGGCAAAGCAAG +
Preference number: 6 (lower is better)
Translates to: KTGEKLWTNRKT*ARVPTPNWQSK
Trigger: CTTGCTTTGCCAGTTTGGGGTTGGGACCCTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CAA 72 bp TTGTTTGGAAATGTAGTGAGGAATAGAGTCAAGGCATaGGCCACAGCCATGTGGCTTAAAATCACCTGTCTG +
Preference number: 6 (lower is better)
Translates to: LFGNVVRNRVKA*ATAMWLKITCL
Trigger: CAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTACATTTCCAAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CAA 72 bp TCAGTTGGAGGAGTTTTGGGACCAAAAGCCATCATGTaGTTTGGAAATGTAGTGAGGAATAGAGTCAAGGCA +
Preference number: 6 (lower is better)
Translates to: SVGGVLGPKAIM*FGNVVRNRVKA
Trigger: TGCCTTGACTCTATTCCTCACTACATTTCCAAACAACATGATGGCTTTTGGTCCCAAAACTCCTCCAACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CCA 72 bp AAACCAACAACTGTAGCAAGAATAATTCGCAAAATTTaGGACACTTACTCTGAGTATGAGTTTACCTTTACC +
Preference number: 6 (lower is better)
Translates to: KPTTVARIIRKI*DTYSEYEFTFT
Trigger: GGTAAAGGTAAACTCATACTCAGAGTAAGTGTCCCAAATTTTGCGAATTATTCTTGCTACAGTTGTTGGTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CCA 72 bp GTTGCTTTTAGAGTCAGTGTTATTGTCTATTATCTGTaGACCAGTGACCTTAATTGGAATATGGATGTTACT +
Preference number: 6 (lower is better)
Translates to: VAFRVSVIVYYL*TSDLNWNMDVT
Trigger: AGTAACATCCATATTCCAATTAAGGTCACTGGTCCACAGATAATAGACAATAACACTGACTCTAAAAGCAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2
CDS CAA 72 bp AATTCTAATTTACATTTGAGTTCAGTTGGAGGAGTTTaGGGACCAAAAGCCATCATGTTGTTTGGAAATGTA +
Preference number: 6 (lower is better)
Translates to: NSNLHLSSVGGV*GPKAIMLFGNV
Trigger: TACATTTCCAAACAACATGATGGCTTTTGGTCCCAAAACTCCTCCAACTGAACTCAAATGTAAATTAGAATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105200.2