Pregenerated sensors for VMN1R123 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094385Ensembl transcript IDs: ENSMUST00000166948.2
Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | TGTCTGGGCCTCTGTTTAGAACCAGTCAAGACTGGAGAGAAATTATaGACAAACAGAAAGACATTGGCCACGGTCCCAACCCCAAACTGG | + |
Preference number: 5 (lower is better) Translates to: CLGLCLEPVKTGEKL*TNRKTLATVPTPNW Trigger: CCAGTTTGGGGTTGGGACCGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCCAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166948.2 |
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CDS CCA 90 bp | AACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACATTaGCCACGGTCCCAACCCCAAACTGGCAAAGCAAGAGGAGTTGAA | + |
Preference number: 5 (lower is better) Translates to: NQSRLERNYGQTERH*PRSQPQTGKARGVE Trigger: TTCAACTCCTCTTGCTTTGCCAGTTTGGGGTTGGGACCGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166948.2 |
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CDS CAA 90 bp | TGTGACCACCAGCATCAGGATAGTACGAGTTGCTCTGGTCTCAGCTaGGCCTCTGGGGTTCTGATTGGGAGTGAGGATGTGCTGCATTCG | + |
Preference number: 6 (lower is better) Translates to: CDHQHQDSTSCSGLS*ASGVLIGSEDVLHS Trigger: CGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAGCTGAGACCAGAGCAACTCGTACTATCCTGATGCTGGTGGTCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166948.2 |
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CDS CCA 72 bp | GTGAGGAATAGAGTCAAGGCATTGGCCACAGCCATGTaGATTAAAATCACCTGTCTGGGCCTCTGTTTAGAA | + |
Preference number: 6 (lower is better) Translates to: VRNRVKALATAM*IKITCLGLCLE Trigger: TTCTAAACAGAGGCCCAGACAGGTGATTTTAATCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166948.2 |
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CDS CAA 72 bp | AAGACTGGAGAGAAATTATGGACAAACAGAAAGACATaGGCCACGGTCCCAACCCCAAACTGGCAAAGCAAG | + |
Preference number: 6 (lower is better) Translates to: KTGEKLWTNRKT*ATVPTPNWQSK Trigger: CTTGCTTTGCCAGTTTGGGGTTGGGACCGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166948.2 |
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CDS CAA 72 bp | TTGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATaGGCCACAGCCATGTGGATTAAAATCACCTGTCTG | + |
Preference number: 6 (lower is better) Translates to: LFGNIVRNRVKA*ATAMWIKITCL Trigger: CAGACAGGTGATTTTAATCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166948.2 |
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CDS CAA 72 bp | AATTCCAATTTACATTTGAGTTCAGTTGGAGGAGTTTaGGGAGCAAAAGCACTCATGTTGTTTGGAAATATA | + |
Preference number: 6 (lower is better) Translates to: NSNLHLSSVGGV*GAKALMLFGNI Trigger: TATATTTCCAAACAACATGAGTGCTTTTGCTCCCAAAACTCCTCCAACTGAACTCAAATGTAAATTGGAATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166948.2 |