Pregenerated sensors for VMN1R121 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094680

Ensembl transcript IDs: ENSMUST00000105197.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGTCTGGGTCTCTGTTTAGAACCAGTCAAGACTGGAGAGGAATTATaGACAAACAGAAAGACATTGGCCATGGTCCCAACCCCAAACTGG	+
Preference number: 5 (lower is better) Translates to: CLGLCLEPVKTGEEL*TNRKTLAMVPTPNW Trigger: CCAGTTTGGGGTTGGGACCATGGCCAATGTCTTTCTGTTTGTCCATAATTCCTCTCCAGTCTTGACTGGTTCTAAACAGAGACCCAGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105197.3
CDS TCA 90 bp	GAGGATTTCTTGGAGCAAAAGCCATCATGTTGTTTGGAAATACAGTaGGGAATAGAGTCAAGGCATTGGCCACAGCCATGTGGCTTAAAA	+
Preference number: 5 (lower is better) Translates to: EDFLEQKPSCCLEIQ*GIESRHWPQPCGLK Trigger: TTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTGTATTTCCAAACAACATGATGGCTTTTGCTCCAAGAAATCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105197.3
CDS CAA 90 bp	GAACCAGTCAAGACTGGAGAGGAATTATGGACAAACAGAAAGACATaGGCCATGGTCCCAACCCCAAACTGGCAAAGCAAAATGATCTGG	+
Preference number: 6 (lower is better) Translates to: EPVKTGEELWTNRKT*AMVPTPNWQSKMIW Trigger: CCAGATCATTTTGCTTTGCCAGTTTGGGGTTGGGACCATGGCCAATGTCTTTCTGTTTGTCCATAATTCCTCTCCAGTCTTGACTGGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105197.3
CDS CAA 90 bp	GCCATCATGTTGTTTGGAAATACAGTGAGGAATAGAGTCAAGGCATaGGCCACAGCCATGTGGCTTAAAATCACCTGTCTGGGTCTCTGT	+
Preference number: 6 (lower is better) Translates to: AIMLFGNTVRNRVKA*ATAMWLKITCLGLC Trigger: ACAGAGACCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTGTATTTCCAAACAACATGATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105197.3
CDS CCA 72 bp	AGACTGGAGAGGAATTATGGACAAACAGAAAGACATTaGCCATGGTCCCAACCCCAAACTGGCAAAGCAAAA	+
Preference number: 6 (lower is better) Translates to: RLERNYGQTERH*PWSQPQTGKAK Trigger: TTTTGCTTTGCCAGTTTGGGGTTGGGACCATGGCCAATGTCTTTCTGTTTGTCCATAATTCCTCTCCAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105197.3
CDS CCA 72 bp	CTCTGTTTAGAACCAGTCAAGACTGGAGAGGAATTATaGACAAACAGAAAGACATTGGCCATGGTCCCAACC	+
Preference number: 6 (lower is better) Translates to: LCLEPVKTGEEL*TNRKTLAMVPT Trigger: GGTTGGGACCATGGCCAATGTCTTTCTGTTTGTCCATAATTCCTCTCCAGTCTTGACTGGTTCTAAACAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105197.3
CDS CCA 72 bp	CACCTGTCTGGGTCTCTGTTTAGAACCAGTCAAGACTaGAGAGGAATTATGGACAAACAGAAAGACATTGGC	+
Preference number: 6 (lower is better) Translates to: HLSGSLFRTSQD*RGIMDKQKDIG Trigger: GCCAATGTCTTTCTGTTTGTCCATAATTCCTCTCCAGTCTTGACTGGTTCTAAACAGAGACCCAGACAGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105197.3
CDS TCA 72 bp	TCTGTTATCTGTGGACCAGTGACCTTAATTGGAATGTaGATGTTACTTAAGACACTGAAAAACCAACAACCG	+
Preference number: 6 (lower is better) Translates to: SVICGPVTLIGM*MLLKTLKNQQP Trigger: CGGTTGTTGGTTTTTCAGTGTCTTAAGTAACATTCACATTCCAATTAAGGTCACTGGTCCACAGATAACAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105197.3

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