Pregenerated sensors for VMN1R120 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093986Ensembl transcript IDs: ENSMUST00000105202.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGAATAGTATGGGTTGCTCTGGACTCAGCTTGGCCTCTGCGGTACTaGTTGGGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATGG | + |
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Preference number: 5 (lower is better) Translates to: RIVWVALDSAWPLRY*LGVRMCCIRWRCLW Trigger: CCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGTACCGCAGAGGCCAAGCTGAGTCCAGAGCAACCCATACTATTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS CCA 90 bp | GGAAATATAGTGAGGAATATAGTCAAGGCATTGGCCACAGCCATGTaGCTTAAAATCACCTTTCTGGGTCTCTGTTTAGAACCAGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: GNIVRNIVKALATAM*LKITFLGLCLEPVK Trigger: CTTGACTGGTTCTAAACAGAGACCCAGAAAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTATATTCCTCACTATATTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS TCA 90 bp | CTCAGGACACAGGTGGAACACAAGTTTGTGTTTCTTGCCACCATGTaGCTGAAGAATTCTAATTTACATTTGAGTTCAGTTGGAGGAGTT | + |
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Preference number: 5 (lower is better) Translates to: LRTQVEHKFVFLATM*LKNSNLHLSSVGGV Trigger: AACTCCTCCAACTGAACTCAAATGTAAATTAGAATTCTTCAGTCACATGGTGGCAAGAAACACAAACTTGTGTTCCACCTGTGTCCTGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS TCA 90 bp | CTGAGTATAAGTTTACCTCTATTAACAAGAACAAGAGTGACAAAATaGTGGATACTCAGGACACAGGTGGAACACAAGTTTGTGTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: LSISLPLLTRTRVTK*WILRTQVEHKFVFL Trigger: AAGAAACACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCATTTTGTCACTCTTGTTCTTGTTAATAGAGGTAAACTTATACTCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS CCA 72 bp | GGAGTGAGGATGTGCTGCATTCGCTGGCGATGTCTATaGAGGAGAAGTATCATGGAGACACTGGTCCAGACC | + |
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Preference number: 6 (lower is better) Translates to: GVRMCCIRWRCL*RRSIMETLVQT Trigger: GGTCTGGACCAGTGTCTCCATGATACTTCTCCTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS TCA 72 bp | AAGGTCCCAACCCCAAACTGGCAAAGCAAGAGGAGCTaGAGAGCCACTTCCTCAGTGCTTTTCAGGGATTTA | + |
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Preference number: 6 (lower is better) Translates to: KVPTPNWQSKRS*RATSSVLFRDL Trigger: TAAATCCCTGAAAAGCACTGAGGAAGTGGCTCTTCAGCTCCTCTTGCTTTGCCAGTTTGGGGTTGGGACCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS CCA 72 bp | AAGCTAACAAATGTGACCACCAGCATCAGAATAGTATaGGTTGCTCTGGACTCAGCTTGGCCTCTGCGGTAC | + |
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Preference number: 6 (lower is better) Translates to: KLTNVTTSIRIV*VALDSAWPLRY Trigger: GTACCGCAGAGGCCAAGCTGAGTCCAGAGCAACCCATACTATTCTGATGCTGGTGGTCACATTTGTTAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS GCA 72 bp | AACAAATGTGACCACCAGCATCAGAATAGTATGGGTTaGTCTGGACTCAGCTTGGCCTCTGCGGTACTGATT | + |
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Preference number: 6 (lower is better) Translates to: NKCDHQHQNSMG*SGLSLASAVLI Trigger: AATCAGTACCGCAGAGGCCAAGCTGAGTCCAGAGCAACCCATACTATTCTGATGCTGGTGGTCACATTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS CCA 72 bp | GTGAGGAATATAGTCAAGGCATTGGCCACAGCCATGTaGCTTAAAATCACCTTTCTGGGTCTCTGTTTAGAA | + |
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Preference number: 6 (lower is better) Translates to: VRNIVKALATAM*LKITFLGLCLE Trigger: TTCTAAACAGAGACCCAGAAAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTATATTCCTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS CAA 72 bp | TTGTTTGGAAATATAGTGAGGAATATAGTCAAGGCATaGGCCACAGCCATGTGGCTTAAAATCACCTTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LFGNIVRNIVKA*ATAMWLKITFL Trigger: CAGAAAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTATATTCCTCACTATATTTCCAAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS CCA 72 bp | TCTGTTATCTGTGGACCAGTGACCTTAATTGGAATGTaGATGTTACTTAAGACACTGAAAAACCAACAACTG | + |
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Preference number: 6 (lower is better) Translates to: SVICGPVTLIGM*MLLKTLKNQQL Trigger: CAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGGTCCACAGATAACAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS TCA 72 bp | AGTTTACCTCTATTAACAAGAACAAGAGTGACAAAATaGTGGATACTCAGGACACAGGTGGAACACAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: SLPLLTRTRVTK*WILRTQVEHKF Trigger: AAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCATTTTGTCACTCTTGTTCTTGTTAATAGAGGTAAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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| CDS CAA 72 bp | TCAGTTGGAGGAGTTTTTGGAGCAAAAGCTATCATGTaGTTTGGAAATATAGTGAGGAATATAGTCAAGGCA | + |
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Preference number: 6 (lower is better) Translates to: SVGGVFGAKAIM*FGNIVRNIVKA Trigger: TGCCTTGACTATATTCCTCACTATATTTCCAAACAACATGATAGCTTTTGCTCCAAAAACTCCTCCAACTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105202.3 |
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