Pregenerated sensors for VMN1R118 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094589

Ensembl transcript IDs: ENSMUST00000172322.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATAAGTTTACCTTTACCTCTACTAACAGGAAAAAGAGTGACAAACTaGTGGACACTCAGGACACAGGTGGAACACAAGTTTGTGCTTCTT	+
Preference number: 5 (lower is better) Translates to: ISLPLPLLTGKRVTN*WTLRTQVEHKFVLL Trigger: AAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTGTCCATCAGTTTGTCACTCTTTTTCCTGTTAGTAGAGGTAAAGGTAAACTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172322.2
CDS TCA 72 bp	CGGGTTGCTCTGGTCTCAGCTTGGCCTCTAGGGTTCTaGTTGGGAGTGAGGATGTCCTGCATTCGCTGGCAA	+
Preference number: 6 (lower is better) Translates to: RVALVSAWPLGF*LGVRMSCIRWQ Trigger: TTGCCAGCGAATGCAGGACATCCTCACTCCCAATCAGAACCCTAGAGGCCAAGCTGAGACCAGAGCAACCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172322.2
CDS TCA 72 bp	ACAGTCCCAACCCCAAACTGGCAAAGCAAGAGGAGCTaGAGAGCCACTTCCTCAGTGGTTTTCACGGATTTA	+
Preference number: 6 (lower is better) Translates to: TVPTPNWQSKRS*RATSSVVFTDL Trigger: TAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGCTCCTCTTGCTTTGCCAGTTTGGGGTTGGGACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172322.2
CDS GCA 72 bp	AACAAATGTGACCACCAGCATCAAGATAGTACGGGTTaGTCTGGTCTCAGCTTGGCCTCTAGGGTTCTGATT	+
Preference number: 6 (lower is better) Translates to: NKCDHQHQDSTG*SGLSLASRVLI Trigger: AATCAGAACCCTAGAGGCCAAGCTGAGACCAGAGCAACCCGTACTATCTTGATGCTGGTGGTCACATTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172322.2
CDS TCA 72 bp	CCTTTACCTCTACTAACAGGAAAAAGAGTGACAAACTaGTGGACACTCAGGACACAGGTGGAACACAAGTTT	+
Preference number: 6 (lower is better) Translates to: PLPLLTGKRVTN*WTLRTQVEHKF Trigger: AAACTTGTGTTCCACCTGTGTCCTGAGTGTCCATCAGTTTGTCACTCTTTTTCCTGTTAGTAGAGGTAAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172322.2
CDS GCA 72 bp	ATCATGATGCTCATGAATGTGGCATCATGGGCAAACTaGAAGACAATGCCTACAATGAATCCAGAAGTGGAA	+
Preference number: 6 (lower is better) Translates to: IMMLMNVASWAN*KTMPTMNPEVE Trigger: TTCCACTTCTGGATTCATTGTAGGCATTGTCTTGCAGTTTGCCCATGATGCCACATTCATGAGCATCATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172322.2
CDS CAA 90 bp	GACACTGAAAAACCAACAACTGTAACAAGAATAACTCGCCAAATTTaGGACACTTGCTCTGAGTATAAGTTTACCTTTACCTCTACTAAC	+
Preference number: 6 (lower is better) Translates to: DTEKPTTVTRITRQI*DTCSEYKFTFTSTN Trigger: GTTAGTAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTGTCCAAAATTTGGCGAGTTATTCTTGTTACAGTTGTTGGTTTTTCAGTGTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172322.2

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