Pregenerated sensors for VMN1R117 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096737

Ensembl transcript IDs: ENSMUST00000166937.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGGTTGCTTTGGACTGAGCTTGGCTTCTGGGGTTCTGATTGGGAGTaGGGATGTGCTGCATTCGCTGGTGATGTCTATGGAGGAGAAGTA	+
Preference number: 5 (lower is better) Translates to: GLLWTELGFWGSDWE*GCAAFAGDVYGGEV Trigger: TACTTCTCCTCCATAGACATCACCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAAGCCAAGCTCAGTCCAAAGCAACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166937.2
CDS GCA 90 bp	CTGGTCCAGACCATGATGCTCATGAATGTGGCATCGTACGCAAACTaGAAGAAGACAATGCCCACACTGAATCCAGAAGTGGAACAGAAC	+
Preference number: 5 (lower is better) Translates to: LVQTMMLMNVASYAN*KKTMPTLNPEVEQN Trigger: GTTCTGTTCCACTTCTGGATTCAGTGTGGGCATTGTCTTCTTGCAGTTTGCGTACGATGCCACATTCATGAGCATCATGGTCTGGACCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000166937.2
CDS CCA 90 bp	TGTCTTGGCCTCTGTTTAGAACCAGTCAAGACTGGAGAGAAATTATaGACAAACAGAAAGACATTGGCCACAGTTCCAACCCCAAACTGG	+
Preference number: 5 (lower is better) Translates to: CLGLCLEPVKTGEKL*TNRKTLATVPTPNW Trigger: CCAGTTTGGGGTTGGAACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCAAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166937.2
CDS CCA 90 bp	AACCAGTCAAGACTGGAGAGAAATTATGGACAAACAGAAAGACATTaGCCACAGTTCCAACCCCAAACTGGCAAAGCAAGAGGATCTGAA	+
Preference number: 5 (lower is better) Translates to: NQSRLERNYGQTERH*PQFQPQTGKARGSE Trigger: TTCAGATCCTCTTGCTTTGCCAGTTTGGGGTTGGAACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166937.2
CDS TCA 72 bp	TGGACTGAGCTTGGCTTCTGGGGTTCTGATTGGGAGTaGGGATGTGCTGCATTCGCTGGTGATGTCTATGGA	+
Preference number: 6 (lower is better) Translates to: WTELGFWGSDWE*GCAAFAGDVYG Trigger: TCCATAGACATCACCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAAGCCAAGCTCAGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166937.2
CDS CAA 90 bp	TGTAAACACCAGCATCAGGATAGTATGGGTTGCTTTGGACTGAGCTaGGCTTCTGGGGTTCTGATTGGGAGTGAGGATGTGCTGCATTCG	+
Preference number: 6 (lower is better) Translates to: CKHQHQDSMGCFGLS*ASGVLIGSEDVLHS Trigger: CGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAAGCCAAGCTCAGTCCAAAGCAACCCATACTATCCTGATGCTGGTGTTTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166937.2
CDS TCA 72 bp	CATCGTACGCAAACTGCAAGAAGACAATGCCCACACTaGATCCAGAAGTGGAACAGAACAGCTTTCTTTTCC	+
Preference number: 6 (lower is better) Translates to: HRTQTARRQCPH*IQKWNRTAFFS Trigger: GGAAAAGAAAGCTGTTCTGTTCCACTTCTGGATTCAGTGTGGGCATTGTCTTCTTGCAGTTTGCGTACGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000166937.2
CDS CAA 90 bp	CATTTGAGGTCATTTGGAGGAGTTTTGGGAGCAAAAGCCATCATGTaGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATTGGCCACA	+
Preference number: 6 (lower is better) Translates to: HLRSFGGVLGAKAIM*FGNIVRNRVKALAT Trigger: TGTGGCCAATGCCTTGACTCTATTCCTCACTATATTTCCAAACAACATGATGGCTTTTGCTCCCAAAACTCCTCCAAATGACCTCAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000166937.2

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