Pregenerated sensors for VMN1R11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115236Ensembl transcript IDs: ENSMUST00000226968.2, ENSMUST00000228235.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACCTGAAACTGCAGTTCCAGGAAATCCCATGCCCTCTTTGGACATaGATGAGCACCACATATGCAGTAATGCATGCATATATGCCGGCA | + |
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Preference number: 1 (lower is better) Translates to: HLKLQFQEIPCPLWT*MSTTYAVMHAYMPA Trigger: TGCCGGCATATATGCATGCATTACTGCATATGTGGTGCTCATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAACTGCAGTTTCAGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR CCA 90 bp | CAGAGCTGGCGAAATAAAGTGAGGAGAATCTCTGGGACTACAATGTaGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCA | + |
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Preference number: 1 (lower is better) Translates to: QSWRNKVRRISGTTM*PICQAPGTVRDILS Trigger: TGACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTCCCAGAGATTCTCCTCACTTTATTTCGCCAGCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR CCA 90 bp | TACCCCCACCTGAAACTGCAGTTCCAGGAAATCCCATGCCCTCTTTaGACATGCATGAGCACCACATATGCAGTAATGCATGCATATATG | + |
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Preference number: 1 (lower is better) Translates to: YPHLKLQFQEIPCPL*TCMSTTYAVMHAYM Trigger: CATATATGCATGCATTACTGCATATGTGGTGCTCATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAACTGCAGTTTCAGGTGGGGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR GCA 90 bp | CGAAATAAAGTGAGGAGAATCTCTGGGACTACAATGTGGCCTATTTaGCAAGCCCCAGGTACAGTGAGAGACATTCTGTCAGAGCATACA | + |
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Preference number: 1 (lower is better) Translates to: RNKVRRISGTTMWPI*QAPGTVRDILSEHT Trigger: TGTATGCTCTGACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTCCCAGAGATTCTCCTCACTTTATTTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR GCA 90 bp | GACTACAATGTGGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCTTCCAGGAAATCCCATaGCCTCTTTGGACATGCATG | + |
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Preference number: 2 (lower is better) Translates to: DYNVAYLPSPRYSERHSVFQEIP*PLWTCM Trigger: CATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAA...GACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR CAA 90 bp | CTACCCCCACCTGAAACTGCAGTTCCAGGAAATCCCATGCCCTCTTaGGACATGCATGAGCACCACATATGCAGTAATGCATGCATATAT | + |
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Preference number: 2 (lower is better) Translates to: LPPPETAVPGNPMPS*DMHEHHICSNACIY Trigger: ATATATGCATGCATTACTGCATATGTGGTGCTCATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAACTGCAGTTTCAGGTGGGGGTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR TCA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATGCACCTACCCCCACCTaGAACTGCAGTTCCAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: RMKTNWEEYGKGKACSEYAPTPT*NCSSRK Trigger: TTTCCTGGAACTGCAGTTTCAGGTGGGGGTAGGTGC...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR TCA 90 bp | GACTACAATGTGGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCACAGTGAATAGCTTCTaGCAACCAACAGCTAAGGTT | + |
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Preference number: 2 (lower is better) Translates to: DYNVAYLPSPRYSERHSVTVNSF*QPTAKV Trigger: AACCTTAGCTGTTGGTTGTCAGAAGCTATTCACTGT...GACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATTGCCCTCTTTGGACATaGATGAGCACCACATATGCA | + |
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Preference number: 2 (lower is better) Translates to: GCLLASTCTVTHSSVHIHCPLWT*MSTTYA Trigger: TGCATATGTGGTGCTCATGCATGTCCAAAGAGGGCA...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATTTCCAGGAAATCCCATaGCCTCTTTGGACATGCATG | + |
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Preference number: 2 (lower is better) Translates to: GCLLASTCTVTHSSVHIHFQEIP*PLWTCM Trigger: CATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAA...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR TCA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATACCAAGGAGCTTATTTaGGTAATCTCAGCATCAAGG | + |
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Preference number: 2 (lower is better) Translates to: GCLLASTCTVTHSSVHIHTKELI*VISASR Trigger: CCTTGATGCTGAGATTACTCAAATAAGCTCCTTGGT...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR TCA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATGCTGGCGAAATAAAGTaGGGAGAATCTCTGGGACTA | + |
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Preference number: 2 (lower is better) Translates to: RMKTNWEEYGKGKACSEYAGEIK*GESLGL Trigger: TAGTCCCAGAGATTCTCCTCACTTTATTTCGCCAGC...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR CCA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATAGTGAGGAGAATCTCTaGGACTACAATGTGGCCTAT | + |
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Preference number: 2 (lower is better) Translates to: RMKTNWEEYGKGKACSEYSEENL*DYNVAY Trigger: ATAGGCCACATTGTAGTCCCAGAGATTCTCCTCACT...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR TCA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATACCAAGGAGCTTATTTaGGTAATCTCAGCATCAAGG | + |
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Preference number: 2 (lower is better) Translates to: RMKTNWEEYGKGKACSEYTKELI*VISASR Trigger: CCTTGATGCTGAGATTACTCAAATAAGCTCCTTGGT...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR TCA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATACAGTGAATAGCTTCTaGCAACCAACAGCTAAGGTT | + |
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Preference number: 2 (lower is better) Translates to: RMKTNWEEYGKGKACSEYTVNSF*QPTAKV Trigger: AACCTTAGCTGTTGGTTGTCAGAAGCTATTCACTGT...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR GCA 72 bp | GTGAGGAGAATCTCTGGGACTACAATGTGGCCTATTTaGCAAGCCCCAGGTACAGTGAGAGACATTCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: VRRISGTTMWPI*QAPGTVRDILS Trigger: TGACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTCCCAGAGATTCTCCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR CAA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATAATCCCATGCCCTCTTaGGACATGCATGAGCACCAC | + |
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Preference number: 3 (lower is better) Translates to: GCLLASTCTVTHSSVHIHNPMPS*DMHEHH Trigger: GTGGTGCTCATGCATGTCCAAAGAGGGCATGGGATT...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR CAA 90 bp | GACTACAATGTGGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCCACCAAGGAGCTTATTaGAGTAATCTCAGCATCAAG | + |
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Preference number: 3 (lower is better) Translates to: DYNVAYLPSPRYSERHSVHQGAY*SNLSIK Trigger: CTTGATGCTGAGATTACTCAAATAAGCTCCTTGGTG...GACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR GCA 72 bp | CTGCAGTTCCAGGAAATCCCATGCCCTCTTTGGACATaGATGAGCACCACATATGCAGTAATGCATGCATAT | + |
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Preference number: 3 (lower is better) Translates to: LQFQEIPCPLWT*MSTTYAVMHAY Trigger: ATATGCATGCATTACTGCATATGTGGTGCTCATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAACTGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR CCA 72 bp | CTGAAACTGCAGTTCCAGGAAATCCCATGCCCTCTTTaGACATGCATGAGCACCACATATGCAGTAATGCAT | + |
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Preference number: 3 (lower is better) Translates to: LKLQFQEIPCPL*TCMSTTYAVMH Trigger: ATGCATTACTGCATATGTGGTGCTCATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAACTGCAGTTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR CAA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATTACAATGTGGCCTATTaGCCAAGCCCCAGGTACAGT | + |
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Preference number: 3 (lower is better) Translates to: RMKTNWEEYGKGKACSEYYNVAY*PSPRYS Trigger: ACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTA...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR-3UTR CAA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATCACCAAGGAGCTTATTaGAGTAATCTCAGCATCAAG | + |
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Preference number: 3 (lower is better) Translates to: GCLLASTCTVTHSSVHIHHQGAY*SNLSIK Trigger: CTTGATGCTGAGATTACTCAAATAAGCTCCTTGGTG...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| 3UTR CAA 72 bp | CCTGAAACTGCAGTTCCAGGAAATCCCATGCCCTCTTaGGACATGCATGAGCACCACATATGCAGTAATGCA | + |
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Preference number: 4 (lower is better) Translates to: PETAVPGNPMPS*DMHEHHICSNA Trigger: TGCATTACTGCATATGTGGTGCTCATGCATGTCCAAAGAGGGCATGGGATTTCCTGGAACTGCAGTTTCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR GCA 90 bp | GACTACAATGTGGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCGGCCTCTCATTACCCTaGATATGTAAAAAGTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: DYNVAYLPSPRYSERHSVGLSLP*ICKKLF Trigger: AAACAACTTTTTACATATGCAGGGTAATGAGAGGCC...GACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR CCA 90 bp | GACTACAATGTGGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCTTAGTGACTTTCATCTaGTTAGTCTCACTCACATTG | + |
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Preference number: 4 (lower is better) Translates to: DYNVAYLPSPRYSERHSVLVTFI*LVSLTL Trigger: CAATGTGAGTGAGACTAACCAGATGAAAGTCACTAA...GACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR TCA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATACAGCATTATGTGAATaGAAGTCTGTTGACAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: GCLLASTCTVTHSSVHIHTALCE*KSVDRR Trigger: TCTCCTGTCAACAGACTTTCATTCACATAATGCTGT...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR GCA 90 bp | GACTACAATGTGGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCATGCAAAATATCTCCTaGAGTGAAGAACAGCATTAT | + |
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Preference number: 4 (lower is better) Translates to: DYNVAYLPSPRYSERHSVMQNIS*SEEQHY Trigger: ATAATGCTGTTCTTCACTGCAGGAGATATTTTGCAT...GACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR GCA 90 bp | GACTACAATGTGGCCTATTTGCCAAGCCCCAGGTACAGTGAGAGACATTCTGTCTTTATGTTTAAATTTTaGCAACAGCGAGGTATTGGG | + |
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Preference number: 4 (lower is better) Translates to: DYNVAYLPSPRYSERHSVFMFKF*QQRGIG Trigger: CCCAATACCTCGCTGTTGGCAAAATTTAAACATAAA...GACAGAATGTCTCTCACTGTACCTGGGGCTTGGCAAATAGGCCACATTGTAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR TCA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATAAATATCTCCTGCAGTaGAGAACAGCATTATGTGAA | + |
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Preference number: 4 (lower is better) Translates to: GCLLASTCTVTHSSVHIHKYLLQ*RTALCE Trigger: TTCACATAATGCTGTTCTTCACTGCAGGAGATATTT...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR CCA 90 bp | GGTTGTCTCCTGGCCTCTACATGTACAGTAACACATTCGTCTGTGCACATACATTTAGTGACTTTCATCTaGTTAGTCTCACTCACATTG | + |
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Preference number: 4 (lower is better) Translates to: GCLLASTCTVTHSSVHIHLVTFI*LVSLTL Trigger: CAATGTGAGTGAGACTAACCAGATGAAAGTCACTAA...ATGTATGTGCACAGACGAATGTGTTACTGTACATGTAGAGGCCAGGAGACAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR TCA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATACAGCATTATGTGAATaGAAGTCTGTTGACAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RMKTNWEEYGKGKACSEYTALCE*KSVDRR Trigger: TCTCCTGTCAACAGACTTTCATTCACATAATGCTGT...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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| CDS-3UTR TCA 90 bp | AGAATGAAGACAAACTGGGAGGAGTATGGGAAGGGTAAAGCCTGTTCAGAATATAAATATCTCCTGCAGTaGAGAACAGCATTATGTGAA | + |
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Preference number: 4 (lower is better) Translates to: RMKTNWEEYGKGKACSEYKYLLQ*RTALCE Trigger: TTCACATAATGCTGTTCTTCACTGCAGGAGATATTT...ATATTCTGAACAGGCTTTACCCTTCCCATACTCCTCCCAGTTTGTCTTCATTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000226968.2 ENSMUST00000228235.2 |
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