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Pregenerated sensors for VMN1R10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000115181

Ensembl transcript IDs: ENSMUST00000176073.3, ENSMUST00000228270.2

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTATGGGCAGGTTCCAGGGAATTCCATGAAATCTTTTCACCTCTGTaGACACCAGGAATGCACACCTGCATAAATTCTGACATGGTATTC +
Preference number: 1 (lower is better)
Translates to: LWAGSREFHEIFSPL*TPGMHTCINSDMVF
Trigger: GAATACCATGTCAGAATTTATGCAGGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGATTTCATGGAATTCCCTGGAACCTGCCCATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
3UTR GCA 90 bp TTCCATGAAATCTTTTCACCTCTGTGGACACCAGGAATGCACACCTaGATAAATTCTGACATGGTATTCATGGTATTCACATGGTATACA +
Preference number: 1 (lower is better)
Translates to: FHEIFSPLWTPGMHT*INSDMVFMVFTWYT
Trigger: TGTATACCATGTGAATACCATGAATACCATGTCAGAATTTATGCAGGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGATTTCATGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
3UTR GCA 72 bp ATCTTTTCACCTCTGTGGACACCAGGAATGCACACCTaGATAAATTCTGACATGGTATTCATGGTATTCACA +
Preference number: 3 (lower is better)
Translates to: IFSPLWTPGMHT*INSDMVFMVFT
Trigger: TGTGAATACCATGAATACCATGTCAGAATTTATGCAGGTGTGCATTCCTGGTGTCCACAGAGGTGAAAAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
3UTR TCA 72 bp TCTGTGGACACCAGGAATGCACACCTGCATAAATTCTaGCATGGTATTCATGGTATTCACATGGTATACATT +
Preference number: 3 (lower is better)
Translates to: SVDTRNAHLHKF*HGIHGIHMVYI
Trigger: AATGTATACCATGTGAATACCATGAATACCATGTCAGAATTTATGCAGGTGTGCATTCCTGGTGTCCACAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
CDS-3UTR CCA 90 bp GTTCCAGGGAATTCCATGAAATCTTTTCACCTCTGTGGACACCAGGAATGCACACTGATAGTGACAGCCTaGAACACACTCAGAAGACAG +
Preference number: 4 (lower is better)
Translates to: VPGNSMKSFHLCGHQECTLIVTA*NTLRRQ
Trigger: CTGTCTTCTGAGTGTGTTCCAGGCTGTCACTATCAG...TGTGCATTCCTGGTGTCCACAGAGGTGAAAAGATTTCATGGAATTCCCTGGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
CDS-3UTR TCA 90 bp GCTCTATGGGCAGGTTCCAGGGAATTCCATGAAATCTTTTCACCTCTGTGGACAACTCTCTCAAGTGGCTaGTGCTATAAAGATACTTGC +
Preference number: 4 (lower is better)
Translates to: ALWAGSREFHEIFSPLWTTLSSG*CYKDTC
Trigger: GCAAGTATCTTTATAGCATCAGCCACTTGAGAGAGT...TGTCCACAGAGGTGAAAAGATTTCATGGAATTCCCTGGAACCTGCCCATAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
CDS-3UTR TCA 90 bp GCTCTATGGGCAGGTTCCAGGGAATTCCATGAAATCTTTTCACCTCTGTGGACAGTGGGCTTAGGTCTGTaGCCTAGGATTATAAAAATA +
Preference number: 4 (lower is better)
Translates to: ALWAGSREFHEIFSPLWTVGLGL*PRIIKI
Trigger: TATTTTTATAATCCTAGGTCACAGACCTAAGCCCAC...TGTCCACAGAGGTGAAAAGATTTCATGGAATTCCCTGGAACCTGCCCATAGAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
CDS-3UTR TCA 90 bp GGAATGCACACCTGCATAAATTCTGACATGGTATTCATGGTATTCACATGGTATTCTCTGTTGATGTTTTaGTTGCAGGTTTTTCAGCAT +
Preference number: 4 (lower is better)
Translates to: GMHTCINSDMVFMVFTWYSLLMF*LQVFQH
Trigger: ATGCTGAAAAACCTGCAATCAAAACATCAACAGAGA...ATACCATGTGAATACCATGAATACCATGTCAGAATTTATGCAGGTGTGCATTCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
CDS-3UTR CAA 90 bp GGAATGCACACCTGCATAAATTCTGACATGGTATTCATGGTATTCACATGGTATGCCATCAAAGAGGTATaGGGACTGATAGTGACAGCC +
Preference number: 5 (lower is better)
Translates to: GMHTCINSDMVFMVFTWYAIKEV*GLIVTA
Trigger: GGCTGTCACTATCAGTCCCAATACCTCTTTGATGGC...ATACCATGTGAATACCATGAATACCATGTCAGAATTTATGCAGGTGTGCATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
CDS-3UTR CAA 90 bp AGGATGATTCTATATAAGCTGCTCTATGGGCAGGTTCCAGGGAATTCCATGAAAATCTCTGTTGATGTTTaGATTGCAGGTTTTTCAGCA +
Preference number: 5 (lower is better)
Translates to: RMILYKLLYGQVPGNSMKISVDV*IAGFSA
Trigger: TGCTGAAAAACCTGCAATCAAAACATCAACAGAGAT...TTTCATGGAATTCCCTGGAACCTGCCCATAGAGCAGCTTATATAGAATCATCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228270.2
CDS CCA 72 bp ATGGGTAAGAGTGAGCAGGATTTAGTGACCTGCATCTaGTTGGTCTCACTCACATTCGTAAAACCACCAACA +
Preference number: 6 (lower is better)
Translates to: MGKSEQDLVTCI*LVSLTFVKPPT
Trigger: TGTTGGTGGTTTTACGAATGTGAGTGAGACCAACCAGATGCAGGTCACTAAATCCTGCTCACTCTTACCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176073.3
ENSMUST00000228270.2
CDS GCA 72 bp ATGTTCATGGGTAAGAGTGAGCAGGATTTAGTGACCTaGATCTGGTTGGTCTCACTCACATTCGTAAAACCA +
Preference number: 6 (lower is better)
Translates to: MFMGKSEQDLVT*IWLVSLTFVKP
Trigger: TGGTTTTACGAATGTGAGTGAGACCAACCAGATGCAGGTCACTAAATCCTGCTCACTCTTACCCATGAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176073.3
ENSMUST00000228270.2