Pregenerated sensors for VMA21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073131Ensembl transcript IDs: ENSMUST00000114575.4, ENSMUST00000114576.9, ENSMUST00000114577.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCGTCAGTGTGCTAATCAGTGCCGCAGCAAGGCCAGTGACACTGTaGCTGAACATTCTAACACTTAGCATTGACATCAAGGGACATCTC | + |
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Preference number: 1 (lower is better) Translates to: PVSVLISAAARPVTL*LNILTLSIDIKGHL Trigger: GAGATGTCCCTTGATGTCAATGCTAAGTGTTAGAATGTTCAGTCACAGTGTCACTGGCCTTGCTGCGGCACTGATTAGCACACTGACGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR TCA 90 bp | TTCAAGTTATACTCCCTAACTGGGATCACCATTACAATCAGGTTTTaGCCATCAGTGAACAGTTTCCGCCGGAAAACACTTAACAGGTTA | + |
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Preference number: 1 (lower is better) Translates to: FKLYSLTGITITIRF*PSVNSFRRKTLNRL Trigger: TAACCTGTTAAGTGTTTTCCGGCGGAAACTGTTCACTGATGGTCAAAACCTGATTGTAATGGTGATCCCAGTTAGGGAGTATAACTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR TCA 90 bp | TGTGTTTCACTAGTGAATAACGTAGTAAAGAAACCTGCTATTAACTaGAGACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCT | + |
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Preference number: 1 (lower is better) Translates to: CVSLVNNVVKKPAIN*RQVTNTVPSLNTLS Trigger: AGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGTCTTCAGTTAATAGCAGGTTTCTTTACTACGTTATTCACTAGTGAAACACA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | AGCTTGCAAGGACACTTCAAGTTATACTCCCTAACTGGGATCACCATTACAATCGGCAGTCAGCCCAGTTaGCTGTCCTCAGTAACCCTA | + |
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Preference number: 2 (lower is better) Translates to: SLQGHFKLYSLTGITITIGSQPS*LSSVTL Trigger: TAGGGTTACTGAGGACAGCCAACTGGGCTGACTGCC...GATTGTAATGGTGATCCCAGTTAGGGAGTATAACTTGAAGTGTCCTTGCAAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGACTACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGCAGTGTGCTAATCAGTaGCGCAGCAAGGCCAGTGAC | + |
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Preference number: 2 (lower is better) Translates to: TDYKSHSGRVEKHHLTSQQCANQ*RSKASD Trigger: GTCACTGGCCTTGCTGCGGCACTGATTAGCACACTG...CTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTAGTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | AGCTTGCAAGGACACTTCAAGTTATACTCCCTAACTGGGATCACCATTACAATCGGCACAATGATAGTGTaGTATTCACAATGCTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: SLQGHFKLYSLTGITITIGTMIV*YSQCWQ Trigger: CTGCCAGCATTGTGAATATCACACTATCATTGTGCC...GATTGTAATGGTGATCCCAGTTAGGGAGTATAACTTGAAGTGTCCTTGCAAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGACTACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGACCAAAAGGTCTGTCTaGCCAGAGACTGAAGGTACC | + |
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Preference number: 2 (lower is better) Translates to: TDYKSHSGRVEKHHLTSQTKRSV*PETEGT Trigger: GGTACCTTCAGTCTCTGGTCAGACAGACCTTTTGGT...CTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTAGTCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATAGGCAGTCAGCCCAGTTaGCTGTCCTCAGTAACCCTA | + |
|
Preference number: 2 (lower is better) Translates to: TSDKYCTIAEHFVYRFTIGSQPS*LSSVTL Trigger: TAGGGTTACTGAGGACAGCCAACTGGGCTGACTGCC...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | ATCACCTATTTTTCTAGTCTAGTTCCACAGCATGAAAATAACAGTAGACCATCAGGCAGTCAGCCCAGTTaGCTGTCCTCAGTAACCCTA | + |
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Preference number: 2 (lower is better) Translates to: ITYFSSLVPQHENNSRPSGSQPS*LSSVTL Trigger: TAGGGTTACTGAGGACAGCCAACTGGGCTGACTGCC...TGATGGTCTACTGTTATTTTCATGCTGTGGAACTAGACTAGAAAAATAGGTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCGATATGGAAAGATTCTAGACGTCTGTAAAGGAATGGAGTTAAGAAATTCAACCAAAAGGTCTGTCTaGCCAGAGACTGAAGGTACC | + |
|
Preference number: 2 (lower is better) Translates to: QRYGKILDVCKGMELRNSTKRSV*PETEGT Trigger: GGTACCTTCAGTCTCTGGTCAGACAGACCTTTTGGT...TGAATTTCTTAACTCCATTCCTTTACAGACGTCTAGAATCTTTCCATATCGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | TTTACTATCATTGAAAACCAGAATGCTACTCTAACCTGTGAAATGGCATCCATTACCAAAAGGTCTGTCTaGCCAGAGACTGAAGGTACC | + |
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Preference number: 2 (lower is better) Translates to: FTIIENQNATLTCEMASITKRSV*PETEGT Trigger: GGTACCTTCAGTCTCTGGTCAGACAGACCTTTTGGT...AATGGATGCCATTTCACAGGTTAGAGTAGCATTCTGGTTTTCAATGATAGTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | AGCTTGCAAGGACACTTCAAGTTATACTCCCTAACTGGGATCACCATTACAATCCTTGTACAGGGGTTGTaGACTAAACTACTGATAATC | + |
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Preference number: 2 (lower is better) Translates to: SLQGHFKLYSLTGITITILVQGL*TKLLII Trigger: GATTATCAGTAGTTTAGTTCACAACCCCTGTACAAG...GATTGTAATGGTGATCCCAGTTAGGGAGTATAACTTGAAGTGTCCTTGCAAGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAAGGCACAATGATAGTGTaGTATTCACAATGCTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSEGTMIV*YSQCWQ Trigger: CTGCCAGCATTGTGAATATCACACTATCATTGTGCC...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAAAGGCCAGTGACACTGTaGCTGAACATTCTAACACTT | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSERPVTL*LNILTL Trigger: AAGTGTTAGAATGTTCAGTCACAGTGTCACTGGCCT...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGACTACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGAATTTCAAAGCAAAGTaGGGGCACAATGATAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: TDYKSHSGRVEKHHLTSQNFKAK*GHNDSV Trigger: CACACTATCATTGTGCCCTCACTTTGCTTTGAAATT...CTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTAGTCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGACTACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGCATTTAAAGAGTCAGTaGTACCAGATGCATCCTACA | + |
|
Preference number: 2 (lower is better) Translates to: TDYKSHSGRVEKHHLTSQHLKSQ*YQMHPT Trigger: TGTAGGATGCATCTGGTATCACTGACTCTTTAAATG...CTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTAGTCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGACTACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGAACCCTACACCCTTTTaGATGAATAGTGTGGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: TDYKSHSGRVEKHHLTSQNPTPF*MNSVVS Trigger: TGAAACCACACTATTCATGCAAAAGGGTGTAGGGTT...CTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTAGTCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR GCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAACTGCAAACTGTAAGGTaGTGTGCAGATGTTGTTAGT | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSELQTVR*CADVVS Trigger: ACTAACAACATCTGCACAGCACCTTACAGTTTGCAG...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCGATATGGAAAGATTCTAGACGTCTGTAAAGGAATGGAGTTAAGAAATTCACAATTACCACACATCTaGAAAACTGCAAACAGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: QRYGKILDVCKGMELRNSQLPHI*KTANSS Trigger: AGAGCTGTTTGCAGTTTTTCAGATGTGTGGTAATTG...TGAATTTCTTAACTCCATTCCTTTACAGACGTCTAGAATCTTTCCATATCGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAATGCTACTCTAACCTGTaGAATGGCATCCATTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSECYSNL*NGIHLK Trigger: CTTTAAATGGATGCCATTTCACAGGTTAGAGTAGCA...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAATTAACTGAAGACAAGTaGCAAATACTGTACCATCGC | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSELTEDK*QILYHR Trigger: GCGATGGTACAGTATTTGTCACTTGTCTTCAGTTAA...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGACTACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTGTCTGGAGATACACTaGATATATGTAAAACGGATC | + |
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Preference number: 2 (lower is better) Translates to: TDYKSHSGRVEKHHLTSQCLEIH*IYVKRI Trigger: GATCCGTTTTACATATATCCAGTGTATCTCCAGACA...CTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTAGTCAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAAGCAATCTTTCCTCACTaGCTTAAAAGTCAGATTAAC | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSEAIFPH*LKSQIN Trigger: GTTAATCTGACTTTTAAGTCAGTGAGGAAAGATTGC...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | CGGAAAACACTTAACAGGTTAACTGTAGCTTTTCTTCTAACACAGCATGAAATACTTGTACAGGGGTTGTaGACTAAACTACTGATAATC | + |
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Preference number: 2 (lower is better) Translates to: RKTLNRLTVAFLLTQHEILVQGL*TKLLII Trigger: GATTATCAGTAGTTTAGTTCACAACCCCTGTACAAG...TATTTCATGCTGTGTTAGAAGAAAAGCTACAGTTAACCTGTTAAGTGTTTTCCG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATACAATTACCACACATCTaGAAAACTGCAAACAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: TSDKYCTIAEHFVYRFTIQLPHI*KTANSS Trigger: AGAGCTGTTTGCAGTTTTTCAGATGTGTGGTAATTG...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | ATCACCTATTTTTCTAGTCTAGTTCCACAGCATGAAAATAACAGTAGACCATCACAATTACCACACATCTaGAAAACTGCAAACAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: ITYFSSLVPQHENNSRPSQLPHI*KTANSS Trigger: AGAGCTGTTTGCAGTTTTTCAGATGTGTGGTAATTG...TGATGGTCTACTGTTATTTTCATGCTGTGGAACTAGACTAGAAAAATAGGTGAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATATGCTACTCTAACCTGTaGAATGGCATCCATTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: TSDKYCTIAEHFVYRFTICYSNL*NGIHLK Trigger: CTTTAAATGGATGCCATTTCACAGGTTAGAGTAGCA...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCGATATGGAAAGATTCTAGACGTCTGTAAAGGAATGGAGTTAAGAAATTCATTTCACTTACCCATTTaGATGTCCTGTCTACAAAAG | + |
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Preference number: 2 (lower is better) Translates to: QRYGKILDVCKGMELRNSFHLPI*MSCLQK Trigger: CTTTTGTAGACAGGACATTCAAATGGGTAAGTGAAA...TGAATTTCTTAACTCCATTCCTTTACAGACGTCTAGAATCTTTCCATATCGCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAATTTAGGAGCAAAATCTaGATAGCTGTGTGTTTCACT | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSEFRSKI*IAVCFT Trigger: AGTGAAACACACAGCTATTCAGATTTTGCTCCTAAA...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR GCA 90 bp | TTTACTATCATTGAAAACCAGAATGCTACTCTAACCTGTGAAATGGCATCCATTAACCCTACACCCTTTTaGATGAATAGTGTGGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: FTIIENQNATLTCEMASINPTPF*MNSVVS Trigger: TGAAACCACACTATTCATGCAAAAGGGTGTAGGGTT...AATGGATGCCATTTCACAGGTTAGAGTAGCATTCTGGTTTTCAATGATAGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR GCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAAACACATCTGAAAAACTaGAAACAGCTCTTTGGTGAA | + |
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Preference number: 2 (lower is better) Translates to: YKSHSGRVEKHHLTSQSETHLKN*KQLFGE Trigger: TTCACCAAAGAGCTGTTTGCAGTTTTTCAGATGTGT...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | CGGAAAACACTTAACAGGTTAACTGTAGCTTTTCTTCTAACACAGCATGAAATATACTTTGTAAGGCAATaGGCAATTACCACACATCTG | + |
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Preference number: 2 (lower is better) Translates to: RKTLNRLTVAFLLTQHEIYFVRQ*AITTHL Trigger: CAGATGTGTGGTAATTGCCCATTGCCTTACAAAGTA...TATTTCATGCTGTGTTAGAAGAAAAGCTACAGTTAACCTGTTAAGTGTTTTCCG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | TTTACTATCATTGAAAACCAGAATGCTACTCTAACCTGTGAAATGGCATCCATTTACTTTGTAAGGCAATaGGCAATTACCACACATCTG | + |
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Preference number: 2 (lower is better) Translates to: FTIIENQNATLTCEMASIYFVRQ*AITTHL Trigger: CAGATGTGTGGTAATTGCCCATTGCCTTACAAAGTA...AATGGATGCCATTTCACAGGTTAGAGTAGCATTCTGGTTTTCAATGATAGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | TTTACTATCATTGAAAACCAGAATGCTACTCTAACCTGTGAAATGGCATCCATTAGGCATATCAGAAGTTaGGAAAAGTACTGTTACAGC | + |
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Preference number: 2 (lower is better) Translates to: FTIIENQNATLTCEMASIRHIRS*EKYCYS Trigger: GCTGTAACAGTACTTTTCCCAACTTCTGATATGCCT...AATGGATGCCATTTCACAGGTTAGAGTAGCATTCTGGTTTTCAATGATAGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR TCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATAGCAATCTTTCCTCACTaGCTTAAAAGTCAGATTAAC | + |
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Preference number: 2 (lower is better) Translates to: TSDKYCTIAEHFVYRFTIAIFPH*LKSQIN Trigger: GTTAATCTGACTTTTAAGTCAGTGAGGAAAGATTGC...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR GCA 90 bp | CGGAAAACACTTAACAGGTTAACTGTAGCTTTTCTTCTAACACAGCATGAAATAACACATCTGAAAAACTaGAAACAGCTCTTTGGTGAA | + |
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Preference number: 2 (lower is better) Translates to: RKTLNRLTVAFLLTQHEITHLKN*KQLFGE Trigger: TTCACCAAAGAGCTGTTTGCAGTTTTTCAGATGTGT...TATTTCATGCTGTGTTAGAAGAAAAGCTACAGTTAACCTGTTAAGTGTTTTCCG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATATGTCTGGAGATACACTaGATATATGTAAAACGGATC | + |
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Preference number: 2 (lower is better) Translates to: TSDKYCTIAEHFVYRFTICLEIH*IYVKRI Trigger: GATCCGTTTTACATATATCCAGTGTATCTCCAGACA...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR GCA 72 bp | GCCCAGTTGGCTGTCCTCAGTAACCCTACACCCTTTTaGATGAATAGTGTGGTTTCAGTGACTTTCCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: AQLAVLSNPTPF*MNSVVSVTFPV Trigger: CACAGGGAAAGTCACTGAAACCACACTATTCATGCAAAAGGGTGTAGGGTTACTGAGGACAGCCAACTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR TCA 72 bp | GTGCTAATCAGTGCCGCAGCAAGGCCAGTGACACTGTaGCTGAACATTCTAACACTTAGCATTGACATCAAG | + |
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Preference number: 3 (lower is better) Translates to: VLISAAARPVTL*LNILTLSIDIK Trigger: CTTGATGTCAATGCTAAGTGTTAGAATGTTCAGTCACAGTGTCACTGGCCTTGCTGCGGCACTGATTAGCAC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR CCA 72 bp | GCCTTTCTTTCGCACACCTCCAGCATCAGCCTTCCTTaGTTACATCTTCCTTGTATACTTTCACTTACCCAT | + |
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Preference number: 3 (lower is better) Translates to: AFLSHTSSISLP*LHLPCILSLTH Trigger: ATGGGTAAGTGAAAGTATACAAGGAAGATGTAACCAAGGAAGGCTGATGCTGGAGGTGTGCGAAAGAAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR TCA 72 bp | CTAATTTCAAAGCAAAGTGAGGGCACAATGATAGTGTaGTATTCACAATGCTGGCAGTCAGCCCAGTTGGCT | + |
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Preference number: 3 (lower is better) Translates to: LISKQSEGTMIV*YSQCWQSAQLA Trigger: AGCCAACTGGGCTGACTGCCAGCATTGTGAATATCACACTATCATTGTGCCCTCACTTTGCTTTGAAATTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CAA 90 bp | CAGCGATATGGAAAGATTCTAGACGTCTGTAAAGGAATGGAGTTAAGAAATTCAAAGGCATATCAGAAGTaGGGAAAAGTACTGTTACAG | + |
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Preference number: 3 (lower is better) Translates to: QRYGKILDVCKGMELRNSKAYQK*GKVLLQ Trigger: CTGTAACAGTACTTTTCCCAACTTCTGATATGCCTT...TGAATTTCTTAACTCCATTCCTTTACAGACGTCTAGAATCTTTCCATATCGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CAA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAAAAGGCATATCAGAAGTaGGGAAAAGTACTGTTACAG | + |
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Preference number: 3 (lower is better) Translates to: YKSHSGRVEKHHLTSQSEKAYQK*GKVLLQ Trigger: CTGTAACAGTACTTTTCCCAACTTCTGATATGCCTT...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CAA 90 bp | CAGCGATATGGAAAGATTCTAGACGTCTGTAAAGGAATGGAGTTAAGAAATTCACCATCGCTGAACACTTaGTCTACAGATTTACTATAC | + |
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Preference number: 3 (lower is better) Translates to: QRYGKILDVCKGMELRNSPSLNT*STDLLY Trigger: GTATAGTAAATCTGTAGACAAAGTGTTCAGCGATGG...TGAATTTCTTAACTCCATTCCTTTACAGACGTCTAGAATCTTTCCATATCGCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR TCA 72 bp | CTAGTGAATAACGTAGTAAAGAAACCTGCTATTAACTaGAGACAAGTGACAAATACTGTACCATCGCTGAAC | + |
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Preference number: 3 (lower is better) Translates to: LVNNVVKKPAIN*RQVTNTVPSLN Trigger: GTTCAGCGATGGTACAGTATTTGTCACTTGTCTTCAGTTAATAGCAGGTTTCTTTACTACGTTATTCACTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CAA 90 bp | TTTACTATCATTGAAAACCAGAATGCTACTCTAACCTGTGAAATGGCATCCATTAAGGCATATCAGAAGTaGGGAAAAGTACTGTTACAG | + |
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Preference number: 3 (lower is better) Translates to: FTIIENQNATLTCEMASIKAYQK*GKVLLQ Trigger: CTGTAACAGTACTTTTCCCAACTTCTGATATGCCTT...AATGGATGCCATTTCACAGGTTAGAGTAGCATTCTGGTTTTCAATGATAGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CAA 90 bp | CAGCGATATGGAAAGATTCTAGACGTCTGTAAAGGAATGGAGTTAAGAAATTCATTGGTTACATCTTCCTaGTATACTTTCACTTACCCA | + |
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Preference number: 3 (lower is better) Translates to: QRYGKILDVCKGMELRNSLVTSS*YTFTYP Trigger: TGGGTAAGTGAAAGTATACAAGGAAGATGTAACCAA...TGAATTTCTTAACTCCATTCCTTTACAGACGTCTAGAATCTTTCCATATCGCTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR-3UTR CAA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATATTGGTTACATCTTCCTaGTATACTTTCACTTACCCA | + |
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Preference number: 3 (lower is better) Translates to: TSDKYCTIAEHFVYRFTILVTSS*YTFTYP Trigger: TGGGTAAGTGAAAGTATACAAGGAAGATGTAACCAA...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR TCA 72 bp | CAGATGTTGTTAGTTATTGCTATTATTCCTGTTCAGTaGGATTTCACCAAACATGGAAGGAAGACTAGATTG | + |
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Preference number: 3 (lower is better) Translates to: QMLLVIAIIPVQ*DFTKHGRKTRL Trigger: CAATCTAGTCTTCCTTCCATGTTTGGTGAAATCTCACTGAACAGGAATAATAGCAATAACTAACAACATCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR TCA 72 bp | CAACAAATTAAGTGGAATTTCGATAAACTTTGCAACTaGAACCTAATTTCAAAGCAAAGTGAGGGCACAATG | + |
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Preference number: 3 (lower is better) Translates to: QQIKWNFDKLCN*NLISKQSEGTM Trigger: CATTGTGCCCTCACTTTGCTTTGAAATTAGGTTTCAGTTGCAAAGTTTATCGAAATTCCACTTAATTTGTTG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| CDS-3UTR TCA 90 bp | TATTCACAATGCTGGCAGTCAGCCCAGTTGGCTGTCCTCAGTAACCCTACACCCAGGGCCAGAACCACATaGACAGCAACAACAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: YSQCWQSAQLAVLSNPTPRARTT*TATTAT Trigger: TGTTGCTGTTGTTGCTGTTCATGTGGTTCTGGCCCT...GGGTGTAGGGTTACTGAGGACAGCCAACTGGGCTGACTGCCAGCATTGTGAATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| CDS-3UTR GCA 90 bp | CGGAAAACACTTAACAGGTTAACTGTAGCTTTTCTTCTAACACAGCATGAAATAACCCTGCCTCCTGCCTaGCCTGGGGCCAGCGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: RKTLNRLTVAFLLTQHEITLPPA*PGASAR Trigger: CCTGGCGCTGGCCCCAGGGCAGGCAGGAGGCAGGGT...TATTTCATGCTGTGTTAGAAGAAAAGCTACAGTTAACCTGTTAAGTGTTTTCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114575.4 |
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| CDS-3UTR CCA 90 bp | ATCACCTATTTTTCTAGTCTAGTTCCACAGCATGAAAATAACAGTAGACCATCAGCCTCCTGCCTGCCCTaGGGCCAGCGCCAGGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: ITYFSSLVPQHENNSRPSASCLP*GQRQAR Trigger: TCTGGCCTGGCGCTGGCCCCAGGGCAGGCAGGAGGC...TGATGGTCTACTGTTATTTTCATGCTGTGGAACTAGACTAGAAAAATAGGTGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114575.4 |
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| CDS-3UTR TCA 90 bp | AGCTTGCAAGGACACTTCAAGTTATACTCCCTAACTGGGATCACCATTACAATCGAACTCAGGGATACCTaGACTCTGGAGGCTGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SLQGHFKLYSLTGITITIELRDT*TLEAAA Trigger: CGCTGCAGCCTCCAGAGTTCAGGTATCCCTGAGTTC...GATTGTAATGGTGATCCCAGTTAGGGAGTATAACTTGAAGTGTCCTTGCAAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114575.4 |
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| CDS-3UTR TCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATATTCATCAGCCTGCGGTaGCCCGTGGAGGGGTCGTCC | + |
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Preference number: 4 (lower is better) Translates to: TSDKYCTIAEHFVYRFTIFISLR*PVEGSS Trigger: GGACGACCCCTCCACGGGTCACCGCAGGCTGATGAA...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114575.4 |
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| CDS-3UTR TCA 90 bp | TTTACTATCATTGAAAACCAGAATGCTACTCTAACCTGTGAAATGGCATCCATTCTAGCCACTCCACGTTaGGCCGGGACTTTCCGCGCA | + |
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Preference number: 4 (lower is better) Translates to: FTIIENQNATLTCEMASILATPR*AGTFRA Trigger: TGCGCGGAAAGTCCCGGCTCAACGTGGAGTGGCTAG...AATGGATGCCATTTCACAGGTTAGAGTAGCATTCTGGTTTTCAATGATAGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114577.8 |
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| 3UTR CAA 72 bp | AGCCTTTCTTTCGCACACCTCCAGCATCAGCCTTCCTaGGTTACATCTTCCTTGTATACTTTCACTTACCCA | + |
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Preference number: 4 (lower is better) Translates to: SLSFAHLQHQPS*VTSSLYTFTYP Trigger: TGGGTAAGTGAAAGTATACAAGGAAGATGTAACCAAGGAAGGCTGATGCTGGAGGTGTGCGAAAGAAAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| 3UTR CAA 72 bp | CACCTCCAGCATCAGCCTTCCTTGGTTACATCTTCCTaGTATACTTTCACTTACCCATTTGAATGTCCTGTC | + |
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Preference number: 4 (lower is better) Translates to: HLQHQPSLVTSS*YTFTYPFECPV Trigger: GACAGGACATTCAAATGGGTAAGTGAAAGTATACAAGGAAGATGTAACCAAGGAAGGCTGATGCTGGAGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| CDS-3UTR TCA 90 bp | ACTGACTACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGAGGGCCAGAACCACATaGACAGCAACAACAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: TDYKSHSGRVEKHHLTSQRARTT*TATTAT Trigger: TGTTGCTGTTGTTGCTGTTCATGTGGTTCTGGCCCT...CTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTAGTCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| CDS-3UTR TCA 90 bp | TACAAAAGCCATTCAGGTAGAGTAGAAAAGCATCACTTAACAAGTCAGTCTGAAAGGGCCAGAACCACATaGACAGCAACAACAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: YKSHSGRVEKHHLTSQSERARTT*TATTAT Trigger: TGTTGCTGTTGTTGCTGTTCATGTGGTTCTGGCCCT...TTCAGACTGACTTGTTAAGTGATGCTTTTCTACTCTACCTGAATGGCTTTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000114575.4 ENSMUST00000114576.9 ENSMUST00000114577.8 |
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| CDS-3UTR TCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATAAAGAGTTTTCATTTCTaGACTCTGGAGGCTGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: TSDKYCTIAEHFVYRFTIKSFHF*TLEAAA Trigger: CGCTGCAGCCTCCAGAGTTCAGAAATGAAAACTCTT...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114576.9 |
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| CDS-3UTR CCA 90 bp | ACAAGTGACAAATACTGTACCATCGCTGAACACTTTGTCTACAGATTTACTATATTCATTTCTGAACTCTaGAGGCTGCAGCGCATTGAG | + |
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Preference number: 4 (lower is better) Translates to: TSDKYCTIAEHFVYRFTIFISEL*RLQRIE Trigger: CTCAATGCGCTGCAGCCTCCAGAGTTCAGAAATGAA...TATAGTAAATCTGTAGACAAAGTGTTCAGCGATGGTACAGTATTTGTCACTTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114576.9 |
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| CDS-3UTR CAA 90 bp | CGGAAAACACTTAACAGGTTAACTGTAGCTTTTCTTCTAACACAGCATGAAATAGCCGAGCGGCCACCGTaGCCCAGCGGAACTCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: RKTLNRLTVAFLLTQHEIAERPP*PSGTQG Trigger: TCCCTGAGTTCCGCTGGGCAACGGTGGCCGCTCGGC...TATTTCATGCTGTGTTAGAAGAAAAGCTACAGTTAACCTGTTAAGTGTTTTCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114575.4 |
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| CDS-3UTR CAA 90 bp | CGGAAAACACTTAACAGGTTAACTGTAGCTTTTCTTCTAACACAGCATGAAATACCTAGCCACTCCACGTaGAGCCGGGACTTTCCGCGC | + |
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Preference number: 5 (lower is better) Translates to: RKTLNRLTVAFLLTQHEIPSHST*SRDFPR Trigger: GCGCGGAAAGTCCCGGCTCAACGTGGAGTGGCTAGG...TATTTCATGCTGTGTTAGAAGAAAAGCTACAGTTAACCTGTTAAGTGTTTTCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114577.8 |
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