Pregenerated sensors for VKORC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096145Ensembl transcript IDs: ENSMUST00000033074.8, ENSMUST00000206053.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATGCAGCCCATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTAGACGCGGGAACAGCTaGTGGCCGTGCCCACATCGC | + |
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Preference number: 4 (lower is better) Translates to: MQPMGTELRGTFGHFSVCRRGNS*WPCPHR Trigger: GCGATGTGGGCACGGCCATCAGCTGTTCCCGCGTCT...ACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCATGGGCTGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033074.8 |
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| CDS-3UTR GCA 90 bp | GGAACCCACACACTTGGGCAAGGGTCATGTGCCAAGGCAAAGCAAGTTAGGTTATCCGCTCCTAGCATGTaGTCCACCAGCCCAAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: GTHTLGQGSCAKAKQVRLSAPSM*STSPKP Trigger: GGGCTTTGGGCTGGTGGAGCACATGCTAGGAGCGGA...TAACCTAACTTGCTTTGCCTTGGCACATGACCCTTGCCCAAGTGTGTGGGTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR GCA 90 bp | TGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAGCGCGCCGCCTTCACGTaGAGTGCGTACAGTGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: WEQNLEARLVISLCVVMERAAFT*SAYSER Trigger: CCTCTCACTGTACGCACTGCACGTGAAGGCGGCGCG...CTCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033074.8 |
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| CDS-3UTR GCA 90 bp | CCCATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATTCCGCTCCTAGCATGTaGTCCACCAGCCCAAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: PMGTELRGTFGHFSVCGYSAPSM*STSPKP Trigger: GGGCTTTGGGCTGGTGGAGCACATGCTAGGAGCGGA...ATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCATGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR TCA 90 bp | GAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAGGGGTGCTGTTGGATTGGTTaGGGACGCTGTCCGCTCCTA | + |
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Preference number: 4 (lower is better) Translates to: EQNLEARLVISLCVVMEGCCWIG*GRCPLL Trigger: TAGGAGCGGACAGCGTCCTCAACCAATCCAACAGCA...CCCCTCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR TCA 90 bp | ATGCAGCCCATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTTGCTGTTGGATTGGTTaGGGACGCTGTCCGCTCCTA | + |
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Preference number: 4 (lower is better) Translates to: MQPMGTELRGTFGHFSVCCCWIG*GRCPLL Trigger: TAGGAGCGGACAGCGTCCTCAACCAATCCAACAGCA...ACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCATGGGCTGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CCA 90 bp | ATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAAATATGCTGTTGGATTaGTTGAGGACGCTGTCCGCT | + |
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Preference number: 4 (lower is better) Translates to: MGTELRGTFGHFSVCGYGNMLLD*LRTLSA Trigger: AGCGGACAGCGTCCTCAACCAATCCAACAGCATATT...TCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CCA 90 bp | GAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAGGGGTGTTCTGGTACCTTCTaGAAGCTAAGCAACATCAGA | + |
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Preference number: 4 (lower is better) Translates to: EQNLEARLVISLCVVMEGCSGTF*KLSNIR Trigger: TCTGATGTTGCTTAGCTTCCAGAAGGTACCAGAACA...CCCCTCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CCA 90 bp | TGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAGTGTTCTGGTACCTTCTaGAAGCTAAGCAACATCAGA | + |
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Preference number: 4 (lower is better) Translates to: WEQNLEARLVISLCVVMECSGTF*KLSNIR Trigger: TCTGATGTTGCTTAGCTTCCAGAAGGTACCAGAACA...CTCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CCA 90 bp | CCCATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATTTTGGTCTTGTGTTCTaGTACCTTCTGGAAGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: PMGTELRGTFGHFSVCGYFGLVF*YLLEAK Trigger: CTTAGCTTCCAGAAGGTACCAGAACACAAGACCAAA...ATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCATGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CCA 90 bp | ATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGATTTGGTCTTGTGTTCTaGTACCTTCTGGAAGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: MGTELRGTFGHFSVCGYGFGLVF*YLLEAK Trigger: CTTAGCTTCCAGAAGGTACCAGAACACAAGACCAAA...TCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CAA 90 bp | GAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAGGGGATGCTGTTGGATTGGTaGAGGACGCTGTCCGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: EQNLEARLVISLCVVMEGMLLDW*RTLSAP Trigger: AGGAGCGGACAGCGTCCTCAACCAATCCAACAGCAT...CCCCTCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CAA 90 bp | CCCATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATATGCTGTTGGATTGGTaGAGGACGCTGTCCGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: PMGTELRGTFGHFSVCGYMLLDW*RTLSAP Trigger: AGGAGCGGACAGCGTCCTCAACCAATCCAACAGCAT...ATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCATGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CAA 90 bp | GGAACCCACACACTTGGGCAAGGGTCATGTGCCAAGGCAAAGCAAGTTAGGTTACAGTGCTTTTTGGTCTaGTGTTCTGGTACCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: GTHTLGQGSCAKAKQVRLQCFLV*CSGTFW Trigger: CCAGAAGGTACCAGAACACAAGACCAAAAAGCACTG...TAACCTAACTTGCTTTGCCTTGGCACATGACCCTTGCCCAAGTGTGTGGGTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CAA 90 bp | ATGCAGCCCATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTAAATATGCTGTTGGATaGGTTGAGGACGCTGTCCGC | + |
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Preference number: 5 (lower is better) Translates to: MQPMGTELRGTFGHFSVCKYAVG*VEDAVR Trigger: GCGGACAGCGTCCTCAACCAATCCAACAGCATATTT...ACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCATGGGCTGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CAA 90 bp | TGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAGAAATATGCTGTTGGATaGGTTGAGGACGCTGTCCGC | + |
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Preference number: 5 (lower is better) Translates to: WEQNLEARLVISLCVVMEKYAVG*VEDAVR Trigger: GCGGACAGCGTCCTCAACCAATCCAACAGCATATTT...CTCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CAA 90 bp | ATGCAGCCCATGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTCAACCAAATATGCTGTaGGATTGGTTGAGGACGCTG | + |
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Preference number: 5 (lower is better) Translates to: MQPMGTELRGTFGHFSVCQPNML*DWLRTL Trigger: CAGCGTCCTCAACCAATCCAACAGCATATTTGGTTG...ACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCATGGGCTGCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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| CDS-3UTR CAA 90 bp | TGGGAACAGAACTTAGAGGCACGTTTGGTCATTTCTCTGTGTGTGGTTATGGAGCAGTGCTTTTTGGTCTaGTGTTCTGGTACCTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: WEQNLEARLVISLCVVMEQCFLV*CSGTFW Trigger: CCAGAAGGTACCAGAACACAAGACCAAAAAGCACTG...CTCCATAACCACACACAGAGAAATGACCAAACGTGCCTCTAAGTTCTGTTCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033074.8 ENSMUST00000206053.2 |
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