Pregenerated sensors for VIPR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000011171Ensembl transcript IDs: ENSMUST00000011315.10, ENSMUST00000176433.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTACAGTCCTTGCACTGGACCACGACATAGTCTTCCAGGGTCTCTaGGCACTGCAGGGAAAGGCACTCTCTGTCTTCAGCTGCTTTTCC | + |
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Preference number: 1 (lower is better) Translates to: PTVLALDHDIVFQGL*ALQGKALSVFSCFS Trigger: GGAAAAGCAGCTGAAGACAGAGAGTGCCTTTCCCTGCAGTGCTCAGAGACCCTGGAAGACTATGTCGTGGTCCAGTGCAAGGACTGTAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 90 bp | AACCCTGGGCTGAATGGACAAGTCACAAGGGCCTTCATGACAACATaGGATCCAGAGCTGCTCACCACTTGTAGGAAGCAGCAGATGCTA | + |
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Preference number: 1 (lower is better) Translates to: NPGLNGQVTRAFMTT*DPELLTTCRKQQML Trigger: TAGCATCTGCTGCTTCCTACAAGTGGTGAGCAGCTCTGGATCCCATGTTGTCATGAAGGCCCTTGTGACTTGTCCATTCAGCCCAGGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 90 bp | GTTTCAATCAAGTTACACATGAGGATCAGAGTTAAGGACCAGGGCTaGACCAATAAGGCACCAGACACTGGGGCAGCAGAGGAATCCAGC | + |
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Preference number: 1 (lower is better) Translates to: VSIKLHMRIRVKDQG*TNKAPDTGAAEESS Trigger: GCTGGATTCCTCTGCTGCCCCAGTGTCTGGTGCCTTATTGGTTCAGCCCTGGTCCTTAACTCTGATCCTCATGTGTAACTTGATTGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 90 bp | CACAGGACACAACTCAAGGCTAGGGGGACCAGGAAGCTTCTAGGATaGGAAGGTTGCTCTCAACTGCTTTCTATGGTATGCCATAGACTG | + |
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Preference number: 1 (lower is better) Translates to: HRTQLKARGTRKLLG*EGCSQLLSMVCHRL Trigger: CAGTCTATGGCATACCATAGAAAGCAGTTGAGAGCAACCTTCTCATCCTAGAAGCTTCCTGGTCCCCCTAGCCTTGAGTTGTGTCCTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR GCA 90 bp | ACTAGCTGGGGCCTACATGCCACAGAAACCACAGGAAACACATTTTaGAGCTCGTTTCCTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: TSWGLHATETTGNTF*SSFPWCVCVCVCVC Trigger: ACACACACACACACACACACACACACACCAAGGAAACGAGCTGCAAAATGTGTTTCCTGTGGTTTCTGTGGCATGTAGGCCCCAGCTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 90 bp | TTTGGTGATTTCCTGACCCCGCCAAGACCTCTGGCTCTGGCACAATaGTTGAGATCATTTGTATTCATACTAGCTGGGGCCTACATGCCA | + |
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Preference number: 1 (lower is better) Translates to: FGDFLTPPRPLALAQ*LRSFVFILAGAYMP Trigger: TGGCATGTAGGCCCCAGCTAGTATGAATACAAATGATCTCAACCATTGTGCCAGAGCCAGAGGTCTTGGCGGGGTCAGGAAATCACCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 90 bp | AATATCCTCTTTGACTTATCTTTGGTCCAGGGAATGGCAAGGGTGTaGCTGTCCAGATGTAGTTCCACAGGACACAACTCAAGGCTAGGG | + |
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Preference number: 1 (lower is better) Translates to: NILFDLSLVQGMARV*LSRCSSTGHNSRLG Trigger: CCCTAGCCTTGAGTTGTGTCCTGTGGAACTACATCTGGACAGCCACACCCTTGCCATTCCCTGGACCAAAGATAAGTCAAAGAGGATATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 90 bp | CATGCCACAGAAACCACAGGAAACACATTTTGCAGCTCGTTTCCTTaGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: HATETTGNTFCSSFP*CVCVCVCVCVCVCV Trigger: CACACACACACACACACACACACACACACACACACACACACACCAAGGAAACGAGCTGCAAAATGTGTTTCCTGTGGTTTCTGTGGCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 90 bp | AGCATTAGCACATGCTGGGCTGAGAGAATGGTGTCCCTGTACATCTaGATATTCCCTGTGCACTCAGTGACTGCTTGTGTTCACATGTTC | + |
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Preference number: 1 (lower is better) Translates to: SISTCWAERMVSLYI*IFPVHSVTACVHMF Trigger: GAACATGTGAACACAAGCAGTCACTGAGTGCACAGGGAATATTCAGATGTACAGGGACACCATTCTCTCAGCCCAGCATGTGCTAATGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 90 bp | GGATATGAGTTCCTGGTTTGGCCAATGAAACATGAATATCCTCTTTaGCTTATCTTTGGTCCAGGGAATGGCAAGGGTGTGGCTGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: GYEFLVWPMKHEYPL*LIFGPGNGKGVAVQ Trigger: CTGGACAGCCACACCCTTGCCATTCCCTGGACCAAAGATAAGTCAAAGAGGATATTCATGTTTCATTGGCCAAACCAGGAACTCATATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR GCA 90 bp | AATGGTGTCCCTGTACATCTGAATATTCCCTGTGCACTCAGTGACTaGTTGTGTTCACATGTTCTACATGTCTCTTCAGGGTCATGGCAG | + |
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Preference number: 1 (lower is better) Translates to: NGVPVHLNIPCALSD*LCSHVLHVSSGSWQ Trigger: CTGCCATGACCCTGAAGAGACATGTAGAACATGTGAACACAAGCAGTCACTGAGTGCACAGGGAATATTCAGATGTACAGGGACACCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR CCA 90 bp | AGTCTTCCAGGGTCTCTGAGCACTGCAGGGAAAGGCACTCTCTGTCTTCAGCTGGCCTTCATGACAACATaGGATCCAGAGCTGCTCACC | + |
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Preference number: 2 (lower is better) Translates to: SLPGSLSTAGKGTLCLQLAFMTT*DPELLT Trigger: GGTGAGCAGCTCTGGATCCCATGTTGTCATGAAGGC...CAGCTGAAGACAGAGAGTGCCTTTCCCTGCAGTGCTCAGAGACCCTGGAAGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR TCA 90 bp | AGGGAAAGGCACTCTCTGTCTTCAGCTGCTTTTCCAACCACGACAAGCATTTCCTCACAAGGGCCTTCATaGCAACATGGGATCCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: RERHSLSSAAFPTTTSISSQGPS*QHGIQS Trigger: GCTCTGGATCCCATGTTGTCATGAAGGCCCTTGTGA...GGAAATGCTTGTCGTGGTTGGAAAAGCAGCTGAAGACAGAGAGTGCCTTTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR TCA 90 bp | TGTATTCATACTAGCTGGGGCCTACATGCCACAGAAACCACAGGAAACACATTTGTCTTCCAGGGTCTCTaGGCACTGCAGGGAAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: CIHTSWGLHATETTGNTFVFQGL*ALQGKA Trigger: TGCCTTTCCCTGCAGTGCTCAGAGACCCTGGAAGAC...AAATGTGTTTCCTGTGGTTTCTGTGGCATGTAGGCCCCAGCTAGTATGAATACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR GCA 90 bp | AGAGAGCCATGGCTGACACCAGGGCTTGTAGCATCCACCTATCGCCACTGCCAAAAGGTTGCTCTCAACTaGTTTCTATGGTATGCCATA | + |
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Preference number: 2 (lower is better) Translates to: REPWLTPGLVASTYRHCQKVALN*FLWYAI Trigger: TATGGCATACCATAGAAAGCAGTTGAGAGCAACCTT...TTGGCAGTGGCGATAGGTGGATGCTACAAGCCCTGGTGTCAGCCATGGCTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR CCA 90 bp | TACCCAGTTGTTGATAGGACTCTTTCAGATATGGGAGAACTGTGTGTCCTCAGAAGCTGTTTCTGGACCTaGTTCCCCCTGACAGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: YPVVDRTLSDMGELCVLRSCFWT*FPLTGG Trigger: GCCTCCTGTCAGGGGGAACCAGGTCCAGAAACAGCT...TCTGAGGACACACAGTTCTCCCATATCTGAAAGAGTCCTATCAACAACTGGGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR GCA 90 bp | CCAGGGCTTGTAGCATCCACCTATCGCCACTGCCAACAGCTCTTTTCAGTGTTCCTGCTTTCTATGGTATaGCATAGACTGAGGAGGAAT | + |
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Preference number: 2 (lower is better) Translates to: PGLVASTYRHCQQLFSVFLLSMV*HRLRRN Trigger: ATTCCTCCTCAGTCTATGGCATACCATAGAAAGCAG...GAACACTGAAAAGAGCTGTTGGCAGTGGCGATAGGTGGATGCTACAAGCCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR GCA 90 bp | TACCCAGTTGTTGATAGGACTCTTTCAGATATGGGAGAACTGTGTGTCCTCAGACCTGCCCCATGCAGTTaGAGACAAACTGGAGGCGTT | + |
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Preference number: 2 (lower is better) Translates to: YPVVDRTLSDMGELCVLRPAPCS*RQTGGV Trigger: AACGCCTCCAGTTTGTCTGCAACTGCATGGGGCAGG...TCTGAGGACACACAGTTCTCCCATATCTGAAAGAGTCCTATCAACAACTGGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR TCA 90 bp | TTCCAACCACGACAAGCATTTCCTCAGGTCTGCTTGCCCACAGTTGCAAAAACAACTAGAATCCAGTTTTaGTGTTCACAGCCACCTGGC | + |
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Preference number: 2 (lower is better) Translates to: FQPRQAFPQVCLPTVAKTTRIQF*CSQPPG Trigger: GCCAGGTGGCTGTGAACATCAAAACTGGATTCTAGT...TGTTTTTGCAACTGTGGGCAAGCAGACCTGAGGAAATGCTTGTCGTGGTTGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR GCA 90 bp | TACCCAGTTGTTGATAGGACTCTTTCAGATATGGGAGAACTGTGTGTCCTCAGATCCACCTATCGCCACTaGCAACAGCTCTTTTCAGTG | + |
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Preference number: 2 (lower is better) Translates to: YPVVDRTLSDMGELCVLRSTYRH*QQLFSV Trigger: CACTGAAAAGAGCTGTTGGCAGTGGCGATAGGTGGA...TCTGAGGACACACAGTTCTCCCATATCTGAAAGAGTCCTATCAACAACTGGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR TCA 90 bp | GCCCACAGTTGCAAAAACATCGGAAAAATATGGATTGTTATTGGCAAGTATCGGCATGAATATCCTCTTTaGCTTATCTTTGGTCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: AHSCKNIGKIWIVIGKYRHEYPL*LIFGPG Trigger: CCCTGGACCAAAGATAAGTCAAAGAGGATATTCATG...CCGATACTTGCCAATAACAATCCATATTTTTCCGATGTTTTTGCAACTGTGGGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | TGTCACAGGGTGGTGATGCTCAGCTGTTTCTGGACCTaGTTCCCCCTGACAGGAGGCAGTAGGGGAACTGGA | + |
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Preference number: 3 (lower is better) Translates to: CHRVVMLSCFWT*FPLTGGSRGTG Trigger: TCCAGTTCCCCTACTGCCTCCTGTCAGGGGGAACCAGGTCCAGAAACAGCTGAGCATCACCACCCTGTGACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 72 bp | CTTGCACTGGACCACGACATAGTCTTCCAGGGTCTCTaGGCACTGCAGGGAAAGGCACTCTCTGTCTTCAGC | + |
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Preference number: 3 (lower is better) Translates to: LALDHDIVFQGL*ALQGKALSVFS Trigger: GCTGAAGACAGAGAGTGCCTTTCCCTGCAGTGCTCAGAGACCCTGGAAGACTATGTCGTGGTCCAGTGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | TTCCTGACCCCGCCAAGACCTCTGGCTCTGGCACAATaGTTGAGATCATTTGTATTCATACTAGCTGGGGCC | + |
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Preference number: 3 (lower is better) Translates to: FLTPPRPLALAQ*LRSFVFILAGA Trigger: GGCCCCAGCTAGTATGAATACAAATGATCTCAACCATTGTGCCAGAGCCAGAGGTCTTGGCGGGGTCAGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 72 bp | CAACTCAAGGCTAGGGGGACCAGGAAGCTTCTAGGATaGGAAGGTTGCTCTCAACTGCTTTCTATGGTATGC | + |
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Preference number: 3 (lower is better) Translates to: QLKARGTRKLLG*EGCSQLLSMVC Trigger: GCATACCATAGAAAGCAGTTGAGAGCAACCTTCTCATCCTAGAAGCTTCCTGGTCCCCCTAGCCTTGAGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR GCA 72 bp | GGCCTACATGCCACAGAAACCACAGGAAACACATTTTaGAGCTCGTTTCCTTGGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: GLHATETTGNTF*SSFPWCVCVCV Trigger: CACACACACACACACACACCAAGGAAACGAGCTGCAAAATGTGTTTCCTGTGGTTTCTGTGGCATGTAGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR GCA 72 bp | GTGGTGTTTTCTAAATCATCTGAGGTGCCTGCCCCATaGAGTTGCAGACAAACTGGAGGCGTTTCAAGCGTT | + |
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Preference number: 3 (lower is better) Translates to: VVFSKSSEVPAP*SCRQTGGVSSV Trigger: AACGCTTGAAACGCCTCCAGTTTGTCTGCAACTGCATGGGGCAGGCACCTCAGATGATTTAGAAAACACCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | GGTTACTACACCTCTGCTATTGGTGAGTTCCAGCAGTaGCCGCTTTATGATCAGTCCATCTCTTTACCAGGG | + |
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Preference number: 3 (lower is better) Translates to: GYYTSAIGEFQQ*PLYDQSISLPG Trigger: CCCTGGTAAAGAGATGGACTGATCATAAAGCGGCCACTGCTGGAACTCACCAATAGCAGAGGTGTAGTAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | TTTGACTTATCTTTGGTCCAGGGAATGGCAAGGGTGTaGCTGTCCAGATGTAGTTCCACAGGACACAACTCA | + |
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Preference number: 3 (lower is better) Translates to: FDLSLVQGMARV*LSRCSSTGHNS Trigger: TGAGTTGTGTCCTGTGGAACTACATCTGGACAGCCACACCCTTGCCATTCCCTGGACCAAAGATAAGTCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 72 bp | CCTATCGCCACTGCCAACAGCTCTTTTCAGTGTTCCTaGGCTAAGCCATTTACTCCCTATGACTTGTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: PIATANSSFQCS*AKPFTPYDLFS Trigger: AGAGAACAAGTCATAGGGAGTAAATGGCTTAGCTCAGGAACACTGAAAAGAGCTGTTGGCAGTGGCGATAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 72 bp | TTCAGATATGGGAGAACTGTGTGTCCTCAGAACTGCTaGCTAAGCAGTGAGCTCTGTATGAAGAGAGCCATG | + |
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Preference number: 3 (lower is better) Translates to: FRYGRTVCPQNC*LSSELCMKRAM Trigger: CATGGCTCTCTTCATACAGAGCTCACTGCTTAGTCAGCAGTTCTGAGGACACACAGTTCTCCCATATCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | CTCTGTTTAGCATTAGCACATGCTGGGCTGAGAGAATaGTGTCCCTGTACATCTGAATATTCCCTGTGCACT | + |
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Preference number: 3 (lower is better) Translates to: LCLALAHAGLRE*CPCTSEYSLCT Trigger: AGTGCACAGGGAATATTCAGATGTACAGGGACACCATTCTCTCAGCCCAGCATGTGCTAATGCTAAACAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 72 bp | GTTGCTCTCAACTGCTTTCTATGGTATGCCATAGACTaGGGAGGAATTTCAGAGACATCCATAGGCATGCGT | + |
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Preference number: 3 (lower is better) Translates to: VALNCFLWYAID*GGISETSIGMR Trigger: ACGCATGCCTATGGATGTCTCTGAAATTCCTCCTCAGTCTATGGCATACCATAGAAAGCAGTTGAGAGCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR GCA 72 bp | CCTGTACATCTGAATATTCCCTGTGCACTCAGTGACTaGTTGTGTTCACATGTTCTACATGTCTCTTCAGGG | + |
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Preference number: 3 (lower is better) Translates to: PVHLNIPCALSD*LCSHVLHVSSG Trigger: CCCTGAAGAGACATGTAGAACATGTGAACACAAGCAGTCACTGAGTGCACAGGGAATATTCAGATGTACAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | AATGCAACAGTTTTCTATTGGCTAGAGAACAAACCCTaGGCTGAATGGACAAGTCACAAGGGCCTTCATGAC | + |
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Preference number: 3 (lower is better) Translates to: NATVFYWLENKP*AEWTSHKGLHD Trigger: GTCATGAAGGCCCTTGTGACTTGTCCATTCAGCCCAGGGTTTGTTCTCTAGCCAATAGAAAACTGTTGCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | GGCACAATGGTTGAGATCATTTGTATTCATACTAGCTaGGGCCTACATGCCACAGAAACCACAGGAAACACA | + |
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Preference number: 3 (lower is better) Translates to: GTMVEIICIHTS*GLHATETTGNT Trigger: TGTGTTTCCTGTGGTTTCTGTGGCATGTAGGCCCCAGCTAGTATGAATACAAATGATCTCAACCATTGTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR CAA 90 bp | CGACAAGCATTTCCTCAGGTCTGCTTGCCCACAGTTGCAAAAACATCGGAAAAATGCAACAGTTTTCTATaGGCTAGAGAACAAACCCTG | + |
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Preference number: 3 (lower is better) Translates to: RQAFPQVCLPTVAKTSEKCNSFL*AREQTL Trigger: CAGGGTTTGTTCTCTAGCCAATAGAAAACTGTTGCA...TTTTTCCGATGTTTTTGCAACTGTGGGCAAGCAGACCTGAGGAAATGCTTGTCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 72 bp | TGTCCCTGTACATCTGAATATTCCCTGTGCACTCAGTaGCTGCTTGTGTTCACATGTTCTACATGTCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: CPCTSEYSLCTQ*LLVFTCSTCLF Trigger: GAAGAGACATGTAGAACATGTGAACACAAGCAGTCACTGAGTGCACAGGGAATATTCAGATGTACAGGGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | AGTCATACCCAGTTGTTGATAGGACTCTTTCAGATATaGGAGAACTGTGTGTCCTCAGAACTGCTGACTAAG | + |
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Preference number: 3 (lower is better) Translates to: SHTQLLIGLFQI*ENCVSSELLTK Trigger: CTTAGTCAGCAGTTCTGAGGACACACAGTTCTCCCATATCTGAAAGAGTCCTATCAACAACTGGGTATGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR-3UTR CAA 90 bp | AGACCTCTGGCTCTGGCACAATGGTTGAGATCATTTGTATTCATACTAGCTGGGTCGGAAAAATATGGATaGTTATTGGCAAGTATCGGG | + |
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Preference number: 3 (lower is better) Translates to: RPLALAQWLRSFVFILAGSEKYG*LLASIG Trigger: CCCGATACTTGCCAATAACAATCCATATTTTTCCGA...CCCAGCTAGTATGAATACAAATGATCTCAACCATTGTGCCAGAGCCAGAGGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR TCA 72 bp | GTGCCTCAGGAGGATATGAGTTCCTGGTTTGGCCAATaGAACATGAATATCCTCTTTGACTTATCTTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: VPQEDMSSWFGQ*NMNILFDLSLV Trigger: GACCAAAGATAAGTCAAAGAGGATATTCATGTTTCATTGGCCAAACCAGGAACTCATATCCTCCTGAGGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| 3UTR CCA 72 bp | GTAGATATTCCACATATAACATGTAAGGTCACATGCTaGTCATATGGTTACTACACCTCTGCTATTGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: VDIPHITCKVTC*SYGYYTSAIGE Trigger: CTCACCAATAGCAGAGGTGTAGTAACCATATGACCAGCATGTGACCTTACATGTTATATGTGGAATATCTAC 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS-3UTR TCA 90 bp | GTTGGGTGTCACAGGGTGGTGATGCTCAGCTGTTTCTGGACCTGGTTCCCCCTGTGGGGCAGGGCACTGTaGCAGTTTCCCCAACGTCTG | + |
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Preference number: 4 (lower is better) Translates to: VGCHRVVMLSCFWTWFPLWGRAL*QFPQRL Trigger: CAGACGTTGGGGAAACTGTCACAGTGCCCTGCCCCA...CAGGGGGAACCAGGTCCAGAAACAGCTGAGCATCACCACCCTGTGACACCCAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS-3UTR TCA 90 bp | CGACAAGCATTTCCTCAGGTCTGCTTGCCCACAGTTGCAAAAACATCGGAAAAACCGGGCGCCAGCATGTaGTGTTGTCCCAGACACCGC | + |
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Preference number: 4 (lower is better) Translates to: RQAFPQVCLPTVAKTSEKPGASM*CCPRHR Trigger: GCGGTGTCTGGGACAACATCACATGCTGGCGCCCGG...TTTTTCCGATGTTTTTGCAACTGTGGGCAAGCAGACCTGAGGAAATGCTTGTCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS-3UTR GCA 90 bp | AGTCTTCCAGGGTCTCTGAGCACTGCAGGGAAAGGCACTCTCTGTCTTCAGCTGGCGAGTTGCTGTCCATaGACCTATACACACACTGGG | + |
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Preference number: 4 (lower is better) Translates to: SLPGSLSTAGKGTLCLQLASCCP*TYTHTG Trigger: CCCAGTGTGTGTATAGGTGCATGGACAGCAACTCGC...CAGCTGAAGACAGAGAGTGCCTTTCCCTGCAGTGCTCAGAGACCCTGGAAGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS-3UTR GCA 90 bp | CACTGGGGCAGCAGAGGAATCCAGCAAACATATGTCAAACCCAGCAGCACTGACACTGAAGTCTCTGACTaGAGGAAGGACTGGGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: HWGSRGIQQTYVKPSSTDTEVSD*RKDWVR Trigger: CCGCACCCAGTCCTTCCTGCAGTCAGAGACTTCAGT...GTCAGTGCTGCTGGGTTTGACATATGTTTGCTGGATTCCTCTGCTGCCCCAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS-3UTR TCA 90 bp | AGAGAGCCATGGCTGACACCAGGGCTTGTAGCATCCACCTATCGCCACTGCCAATGCTGTAGAAATTGCTaGATACTTTGGGGCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: REPWLTPGLVASTYRHCQCCRNC*ILWGRA Trigger: TGCCCTGCCCCAAAGTATTCAGCAATTTCTACAGCA...TTGGCAGTGGCGATAGGTGGATGCTACAAGCCCTGGTGTCAGCCATGGCTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS-3UTR CCA 90 bp | CTCTCTGTCTTCAGCTGCTTTTCCAACCACGACAAGCATTTCCTCAGGTCTGCTTGCTGGGAGGAAGGATaGCTACCAGGAGGGTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: LSVFSCFSNHDKHFLRSACWEEG*LPGGCA Trigger: TGCACACCCTCCTGGTAGCCATCCTTCCTCCCAGCA...AGCAGACCTGAGGAAATGCTTGTCGTGGTTGGAAAAGCAGCTGAAGACAGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS-3UTR CCA 90 bp | GCCCACAGTTGCAAAAACATCGGAAAAATATGGATTGTTATTGGCAAGTATCGGTCCCGGCTCCCAGCTTaGGTCAGGCACAGGCCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: AHSCKNIGKIWIVIGKYRSRLPA*VRHRPR Trigger: GCGAGGCCTGTGCCTGACCCAAGCTGGGAGCCGGGA...CCGATACTTGCCAATAACAATCCATATTTTTCCGATGTTTTTGCAACTGTGGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | TTCCAACCACGACAAGCATTTCCTCAGGTCTGCTTGCCCACAGTTGCAAAAACAAAGCGACATTCTGGATaGATGCTGCTCACCCGCACC | + |
|
Preference number: 4 (lower is better) Translates to: FQPRQAFPQVCLPTVAKTKRHSG*MLLTRT Trigger: GGTGCGGGTGAGCAGCATCCATCCAGAATGTCGCTT...TGTTTTTGCAACTGTGGGCAAGCAGACCTGAGGAAATGCTTGTCGTGGTTGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | ATAAGGCACCAGACACTGGGGCAGCAGAGGAATCCAGCAAACATATGTCAAACCGCAGCAGTGTGGACTTaGCAAGCCTCTTGTACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: IRHQTLGQQRNPANICQTAAVWT*QASCTV Trigger: CACAGTACAAGAGGCTTGCCAAGTCCACACTGCTGC...GGTTTGACATATGTTTGCTGGATTCCTCTGCTGCCCCAGTGTCTGGTGCCTTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR GCA 90 bp | AGAGAGCCATGGCTGACACCAGGGCTTGTAGCATCCACCTATCGCCACTGCCAAAAGCCAGTAGAAGTTTaGCATGATACAGTACTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: REPWLTPGLVASTYRHCQKPVEV*HDTVLE Trigger: TTCCAGTACTGTATCATGGCAAACTTCTACTGGCTT...TTGGCAGTGGCGATAGGTGGATGCTACAAGCCCTGGTGTCAGCCATGGCTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR GCA 90 bp | TACCCAGTTGTTGATAGGACTCTTTCAGATATGGGAGAACTGTGTGTCCTCAGAAGGCCAGGAAGCACCTaGTGGGAGGAAGGATGGCTA | + |
|
Preference number: 4 (lower is better) Translates to: YPVVDRTLSDMGELCVLRRPGST*WEEGWL Trigger: TAGCCATCCTTCCTCCCAGCAGGTGCTTCCTGGCCT...TCTGAGGACACACAGTTCTCCCATATCTGAAAGAGTCCTATCAACAACTGGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | CACTGGGGCAGCAGAGGAATCCAGCAAACATATGTCAAACCCAGCAGCACTGACCTCTTGTACTGTGACTaGTCATTGCCACCAACATCT | + |
|
Preference number: 4 (lower is better) Translates to: HWGSRGIQQTYVKPSSTDLLYCD*SLPPTS Trigger: AGATGTTGGTGGCAATGACCAGTCACAGTACAAGAG...GTCAGTGCTGCTGGGTTTGACATATGTTTGCTGGATTCCTCTGCTGCCCCAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | ATATGTCTTGCCTTGGCTCAGCCCCATGGGTCCTTTAGGATTTTCATCAATGCCGCAGCAGTGTGGACTTaGCAAGCCTCTTGTACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: ICLALAQPHGSFRIFINAAAVWT*QASCTV Trigger: CACAGTACAAGAGGCTTGCCAAGTCCACACTGCTGC...GGCATTGATGAAAATCCTAAAGGACCCATGGGGCTGAGCCAAGGCAAGACATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176433.2 |
||
| CDS-3UTR CCA 90 bp | TATGTCTTGCCTTGGCTCAGCCCCATGGGTCCTTTAGGATTTTCATCAATGCCTGCTACCACCAGGCCCTaGAAGGAACCAACACATAAC | + |
|
Preference number: 4 (lower is better) Translates to: YVLPWLSPMGPLGFSSMPATTRP*KEPTHN Trigger: GTTATGTGTTGGTTCCTTCCAGGGCCTGGTGGTAGC...AGGCATTGATGAAAATCCTAAAGGACCCATGGGGCTGAGCCAAGGCAAGACATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176433.2 |
||
| CDS-3UTR GCA 90 bp | GCCCACAGTTGCAAAAACATCGGAAAAATATGGATTGTTATTGGCAAGTATCGGGCAGGAAGGACTGGGTaGGGGAGCCACGGTGTATCT | + |
|
Preference number: 4 (lower is better) Translates to: AHSCKNIGKIWIVIGKYRAGRTG*GSHGVS Trigger: AGATACACCGTGGCTCCCGCACCCAGTCCTTCCTGC...CCGATACTTGCCAATAACAATCCATATTTTTCCGATGTTTTTGCAACTGTGGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | CACTGGGGCAGCAGAGGAATCCAGCAAACATATGTCAAACCCAGCAGCACTGACAACTCAAACAGGATCTaGTATGTGGATGAGATGCCA | + |
|
Preference number: 4 (lower is better) Translates to: HWGSRGIQQTYVKPSSTDNSNRI*YVDEMP Trigger: TGGCATCTCATCCACATACCAGATCCTGTTTGAGTT...GTCAGTGCTGCTGGGTTTGACATATGTTTGCTGGATTCCTCTGCTGCCCCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | TACCCAGTTGTTGATAGGACTCTTTCAGATATGGGAGAACTGTGTGTCCTCAGAGCTACCACCAGGCCCTaGAAGGAACCAACACATAAC | + |
|
Preference number: 4 (lower is better) Translates to: YPVVDRTLSDMGELCVLRATTRP*KEPTHN Trigger: GTTATGTGTTGGTTCCTTCCAGGGCCTGGTGGTAGC...TCTGAGGACACACAGTTCTCCCATATCTGAAAGAGTCCTATCAACAACTGGGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR TCA 90 bp | CCAGGGCTTGTAGCATCCACCTATCGCCACTGCCAACAGCTCTTTTCAGTGTTCGGAGAAGTTAGTTTCTaGAGTAAGATCCTTACAATG | + |
|
Preference number: 4 (lower is better) Translates to: PGLVASTYRHCQQLFSVFGEVSF*SKILTM Trigger: CATTGTAAGGATCTTACTTCAGAAACTAACTTCTCC...GAACACTGAAAAGAGCTGTTGGCAGTGGCGATAGGTGGATGCTACAAGCCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | ATATGTCTTGCCTTGGCTCAGCCCCATGGGTCCTTTAGGATTTTCATCAATGCCAACTCAAACAGGATCTaGTATGTGGATGAGATGCCA | + |
|
Preference number: 4 (lower is better) Translates to: ICLALAQPHGSFRIFINANSNRI*YVDEMP Trigger: TGGCATCTCATCCACATACCAGATCCTGTTTGAGTT...GGCATTGATGAAAATCCTAAAGGACCCATGGGGCTGAGCCAAGGCAAGACATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176433.2 |
||
| CDS-3UTR TCA 90 bp | TACCCAGTTGTTGATAGGACTCTTTCAGATATGGGAGAACTGTGTGTCCTCAGATCTTGTATTTCTAGATaGAAGCGACATTCTGGATGG | + |
|
Preference number: 4 (lower is better) Translates to: YPVVDRTLSDMGELCVLRSCISR*KRHSGW Trigger: CCATCCAGAATGTCGCTTTCATCTAGAAATACAAGA...TCTGAGGACACACAGTTCTCCCATATCTGAAAGAGTCCTATCAACAACTGGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | TGTATTCATACTAGCTGGGGCCTACATGCCACAGAAACCACAGGAAACACATTTTTTGCTTATGTTTCCTaGTCTGCTGTAGAAATTGCT | + |
|
Preference number: 4 (lower is better) Translates to: CIHTSWGLHATETTGNTFFAYVS*SAVEIA Trigger: AGCAATTTCTACAGCAGACCAGGAAACATAAGCAAA...AAATGTGTTTCCTGTGGTTTCTGTGGCATGTAGGCCCCAGCTAGTATGAATACA 41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CCA 90 bp | CGACAAGCATTTCCTCAGGTCTGCTTGCCCACAGTTGCAAAAACATCGGAAAAAAGCCCAAGGTATAAATaGCCTTCACCAAAATATAAA | + |
|
Preference number: 4 (lower is better) Translates to: RQAFPQVCLPTVAKTSEKSPRYK*PSPKYK Trigger: TTTATATTTTGGTGAAGGCCATTTATACCTTGGGCT...TTTTTCCGATGTTTTTGCAACTGTGGGCAAGCAGACCTGAGGAAATGCTTGTCG 41% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS GCA 90 bp | GCTGAATACTTTGGGGCAGGGCACTGTGACAGTTTCCCCAACGTCTaGCGGGCGCCAGCATGTGATGTTGTCCCAGACACCGCTGCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: AEYFGAGHCDSFPNV*RAPACDVVPDTAAG Trigger: GCCTGCAGCGGTGTCTGGGACAACATCACATGCTGGCGCCCGGCAGACGTTGGGGAAACTGTCACAGTGCCCTGCCCCAAAGTATTCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS GCA 90 bp | AAGAGAGGCGAGTTGCTGTCCATGCACCTATACACACACTGGGGATaGCCCATCCGATCAGAAGGTAGGCCAGGAAGCACCTGCTGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: KRGELLSMHLYTHWG*PIRSEGRPGSTCWE Trigger: CTCCCAGCAGGTGCTTCCTGGCCTACCTTCTGATCGGATGGGGCATCCCCAGTGTGTGTATAGGTGCATGGACAGCAACTCGCCTCTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CAA 90 bp | AGTCTTCCAGGGTCTCTGAGCACTGCAGGGAAAGGCACTCTCTGTCTTCAGCTGAATACCAGGCTGAGCTaGCAGCCAACCCAGGAGGCT | + |
|
Preference number: 5 (lower is better) Translates to: SLPGSLSTAGKGTLCLQLNTRLS*QPTQEA Trigger: AGCCTCCTGGGTTGGCTGCAAGCTCAGCCTGGTATT...CAGCTGAAGACAGAGAGTGCCTTTCCCTGCAGTGCTCAGAGACCCTGGAAGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS TCA 90 bp | GGGCGCCAGCATGTGATGTTGTCCCAGACACCGCTGCAGGCTCTCTaGTTCTCCGTTTGGCTGCTTAGCAGCTCTGCACATTTTGTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GRQHVMLSQTPLQAL*FSVWLLSSSAHFVS Trigger: AGAGACAAAATGTGCAGAGCTGCTAAGCAGCCAAACGGAGAATCAGAGAGCCTGCAGCGGTGTCTGGGACAACATCACATGCTGGCGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CCA 90 bp | CTTCTAAAGAGAGGCGAGTTGCTGTCCATGCACCTATACACACACTaGGGATGCCCCATCCGATCAGAAGGTAGGCCAGGAAGCACCTGC | + |
|
Preference number: 5 (lower is better) Translates to: LLKRGELLSMHLYTH*GCPIRSEGRPGSTC Trigger: GCAGGTGCTTCCTGGCCTACCTTCTGATCGGATGGGGCATCCCCAGTGTGTGTATAGGTGCATGGACAGCAACTCGCCTCTCTTTAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CAA 90 bp | ACCTGGTTCCCCCTGACAGGAGGCAGTAGGGGAACTGGAATCTTCCTCCTTGTTGGATGCTGTGGTCGTTaGTGTCCCAGCAACCTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: TWFPLTGGSRGTGIFLLVGCCGR*CPSNLC Trigger: ACACAGGTTGCTGGGACACAAACGACCACAGCATCC...AACAAGGAGGAAGATTCCAGTTCCCCTACTGCCTCCTGTCAGGGGGAACCAGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CAA 90 bp | TGTATTCATACTAGCTGGGGCCTACATGCCACAGAAACCACAGGAAACACATTTGTCCCGGCTCCCAGCTaGGGTCAGGCACAGGCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: CIHTSWGLHATETTGNTFVPAPS*GQAQAS Trigger: CGAGGCCTGTGCCTGACCCAAGCTGGGAGCCGGGAC...AAATGTGTTTCCTGTGGTTTCTGTGGCATGTAGGCCCCAGCTAGTATGAATACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CAA 90 bp | GTTGGGTGTCACAGGGTGGTGATGCTCAGCTGTTTCTGGACCTGGTTCCCCCTGAAATTGCTGAATACTTaGGGGCAGGGCACTGTGACA | + |
|
Preference number: 5 (lower is better) Translates to: VGCHRVVMLSCFWTWFPLKLLNT*GQGTVT Trigger: TGTCACAGTGCCCTGCCCCAAAGTATTCAGCAATTT...CAGGGGGAACCAGGTCCAGAAACAGCTGAGCATCACCACCCTGTGACACCCAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CAA 90 bp | AGTCTTCCAGGGTCTCTGAGCACTGCAGGGAAAGGCACTCTCTGTCTTCAGCTGAGCAGCAGTGTGGACTaGGCAAGCCTCTTGTACTGT | + |
|
Preference number: 5 (lower is better) Translates to: SLPGSLSTAGKGTLCLQLSSSVD*ASLLYC Trigger: ACAGTACAAGAGGCTTGCCAAGTCCACACTGCTGCT...CAGCTGAAGACAGAGAGTGCCTTTCCCTGCAGTGCTCAGAGACCCTGGAAGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CAA 90 bp | AGACCTCTGGCTCTGGCACAATGGTTGAGATCATTTGTATTCATACTAGCTGGGCGCCAGCATGTGATGTaGTCCCAGACACCGCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RPLALAQWLRSFVFILAGRQHVM*SQTPLQ Trigger: CTGCAGCGGTGTCTGGGACAACATCACATGCTGGCG...CCCAGCTAGTATGAATACAAATGATCTCAACCATTGTGCCAGAGCCAGAGGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS-3UTR CAA 90 bp | TATGTCTTGCCTTGGCTCAGCCCCATGGGTCCTTTAGGATTTTCATCAATGCCTGGATGCTGTGGTCGTTaGTGTCCCAGCAACCTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: YVLPWLSPMGPLGFSSMPGCCGR*CPSNLC Trigger: ACACAGGTTGCTGGGACACAAACGACCACAGCATCC...AGGCATTGATGAAAATCCTAAAGGACCCATGGGGCTGAGCCAAGGCAAGACATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176433.2 |
||
| CDS-3UTR CAA 90 bp | TGTCTTGCCTTGGCTCAGCCCCATGGGTCCTTTAGGATTTTCATCAATGCCTTCAGCAGCAGTGTGGACTaGGCAAGCCTCTTGTACTGT | + |
|
Preference number: 5 (lower is better) Translates to: CLALAQPHGSFRIFINAFSSSVD*ASLLYC Trigger: ACAGTACAAGAGGCTTGCCAAGTCCACACTGCTGCT...GAAGGCATTGATGAAAATCCTAAAGGACCCATGGGGCTGAGCCAAGGCAAGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176433.2 |
||
| CDS GCA 90 bp | TCTCTTCTTCTTGTATTTCTAGATGAAAGCGACATTCTGGATGGATaGTGCTCACCCGCACCAGCAACCAGCAGTAGCAGGTCAGCACCA | + |
|
Preference number: 5 (lower is better) Translates to: SLLLVFLDESDILDG*CSPAPATSSSRSAP Trigger: TGGTGCTGACCTGCTACTGCTGGTTGCTGGTGCGGGTGAGCAGCATCCATCCAGAATGTCGCTTTCATCTAGAAATACAAGAAGAAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CCA 90 bp | ATAGAAATTAGAATGGGCATCCGAATGACCCACCAGGGGATGCTGTaGTCGTTTGTGTCCCAGCAACCTGTGTCTTCTAAAGAGAGGCGA | + |
|
Preference number: 5 (lower is better) Translates to: IEIRMGIRMTHQGML*SFVSQQPVSSKERR Trigger: TCGCCTCTCTTTAGAAGACACAGGTTGCTGGGACACAAACGACCACAGCATCCCCTGGTGGGTCATTCGGATGCCCATTCTAATTTCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011315.10 ENSMUST00000176433.2 |
||
| CDS-3UTR CAA 90 bp | ACTGGGGCAGCAGAGGAATCCAGCAAACATATGTCAAACCCAGCAGCACTGACATACTGTGACTGGTCATaGCCACCAACATCTGGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: TGAAEESSKHMSNPAALTYCDWS*PPTSGE Trigger: TTCTCCAGATGTTGGTGGCAATGACCAGTCACAGTA...TGTCAGTGCTGCTGGGTTTGACATATGTTTGCTGGATTCCTCTGCTGCCCCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS TCA 90 bp | GGGGTCGTTGTAGCCACACGCATCTATGAAATCTGGAAATGTCTCTaGCCATCCATCGCTAGTGCAGTTTTTGCTTATGTTTCCTGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: GVVVATRIYEIWKCL*PSIASAVFAYVSWS Trigger: AGACCAGGAAACATAAGCAAAAACTGCACTAGCGATGGATGGTCAGAGACATTTCCAGATTTCATAGATGCGTGTGGCTACAACGACCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS GCA 90 bp | GCAGCAGTGTGGACTTGGCAAGCCTCTTGTACTGTGACTGGTCATTaGCACCAACATCTGGAGAAGTTAGTTTCTGAAGTAAGATCCTTA | + |
|
Preference number: 5 (lower is better) Translates to: AAVWTWQASCTVTGH*HQHLEKLVSEVRSL Trigger: TAAGGATCTTACTTCAGAAACTAACTTCTCCAGATGTTGGTGGCAATGACCAGTCACAGTACAAGAGGCTTGCCAAGTCCACACTGCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011315.10 ENSMUST00000176433.2 |
||
| CDS-3UTR CAA 90 bp | GAATATGTCTTGCCTTGGCTCAGCCCCATGGGTCCTTTAGGATTTTCATCAATGTACTGTGACTGGTCATaGCCACCAACATCTGGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: EYVLPWLSPMGPLGFSSMYCDWS*PPTSGE Trigger: TTCTCCAGATGTTGGTGGCAATGACCAGTCACAGTA...CATTGATGAAAATCCTAAAGGACCCATGGGGCTGAGCCAAGGCAAGACATATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176433.2 |
||
| CDS CAA 72 bp | GGACCAGCTGTGCAGCCGGTAGTCCCGGCTCCCAGCTaGGGTCAGGCACAGGCCTCGCCATCTTCTTTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: GPAVQPVVPAPS*GQAQASPSSFQ Trigger: CTGAAAAGAAGATGGCGAGGCCTGTGCCTGACCCAAGCTGGGAGCCGGGACTACCGGCTGCACAGCTGGTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CAA 90 bp | CCGGGACATGGACCAGCTGTGCAGCCGGTAGTCCCGGCTCCCAGCTaGGGTCAGGCACAGGCCTCGCCATCTTCTTTTCAGTTCACACTG | + |
|
Preference number: 6 (lower is better) Translates to: PGHGPAVQPVVPAPS*GQAQASPSSFQFTL Trigger: CAGTGTGAACTGAAAAGAAGATGGCGAGGCCTGTGCCTGACCCAAGCTGGGAGCCGGGACTACCGGCTGCACAGCTGGTCCATGTCCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS GCA 72 bp | TTTGGGGCAGGGCACTGTGACAGTTTCCCCAACGTCTaGCGGGCGCCAGCATGTGATGTTGTCCCAGACACC | + |
|
Preference number: 6 (lower is better) Translates to: FGAGHCDSFPNV*RAPACDVVPDT Trigger: GGTGTCTGGGACAACATCACATGCTGGCGCCCGGCAGACGTTGGGGAAACTGTCACAGTGCCCTGCCCCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CAA 72 bp | GCCATGATACAGTACTGGAAGAATACCAGGCTGAGCTaGCAGCCAACCCAGGAGGCTGGCTGGTCGTGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: AMIQYWKNTRLS*QPTQEAGWSWQ Trigger: CTGCCACGACCAGCCAGCCTCCTGGGTTGGCTGCAAGCTCAGCCTGGTATTCTTCCAGTACTGTATCATGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS GCA 72 bp | GAGTTGCTGTCCATGCACCTATACACACACTGGGGATaGCCCATCCGATCAGAAGGTAGGCCAGGAAGCACC | + |
|
Preference number: 6 (lower is better) Translates to: ELLSMHLYTHWG*PIRSEGRPGST Trigger: GGTGCTTCCTGGCCTACCTTCTGATCGGATGGGGCATCCCCAGTGTGTGTATAGGTGCATGGACAGCAACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CCA 72 bp | AGAGGCGAGTTGCTGTCCATGCACCTATACACACACTaGGGATGCCCCATCCGATCAGAAGGTAGGCCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: RGELLSMHLYTH*GCPIRSEGRPG Trigger: TCCTGGCCTACCTTCTGATCGGATGGGGCATCCCCAGTGTGTGTATAGGTGCATGGACAGCAACTCGCCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CAA 90 bp | GGTCGTTTGTGTCCCAGCAACCTGTGTCTTCTAAAGAGAGGCGAGTaGCTGTCCATGCACCTATACACACACTGGGGATGCCCCATCCGA | + |
|
Preference number: 6 (lower is better) Translates to: GRLCPSNLCLLKRGE*LSMHLYTHWGCPIR Trigger: TCGGATGGGGCATCCCCAGTGTGTGTATAGGTGCATGGACAGCAACTCGCCTCTCTTTAGAAGACACAGGTTGCTGGGACACAAACGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS TCA 72 bp | CATGTGATGTTGTCCCAGACACCGCTGCAGGCTCTCTaGTTCTCCGTTTGGCTGCTTAGCAGCTCTGCACAT | + |
|
Preference number: 6 (lower is better) Translates to: HVMLSQTPLQAL*FSVWLLSSSAH Trigger: ATGTGCAGAGCTGCTAAGCAGCCAAACGGAGAATCAGAGAGCCTGCAGCGGTGTCTGGGACAACATCACATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CCA 72 bp | AGAATGGGCATCCGAATGACCCACCAGGGGATGCTGTaGTCGTTTGTGTCCCAGCAACCTGTGTCTTCTAAA | + |
|
Preference number: 6 (lower is better) Translates to: RMGIRMTHQGML*SFVSQQPVSSK Trigger: TTTAGAAGACACAGGTTGCTGGGACACAAACGACCACAGCATCCCCTGGTGGGTCATTCGGATGCCCATTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000011315.10 ENSMUST00000176433.2 |
||
| CDS GCA 72 bp | GTATTTCTAGATGAAAGCGACATTCTGGATGGATGCTaGTCACCCGCACCAGCAACCAGCAGTAGCAGGTCA | + |
|
Preference number: 6 (lower is better) Translates to: VFLDESDILDGC*SPAPATSSSRS Trigger: TGACCTGCTACTGCTGGTTGCTGGTGCGGGTGAGCAGCATCCATCCAGAATGTCGCTTTCATCTAGAAATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS GCA 72 bp | CTTGTATTTCTAGATGAAAGCGACATTCTGGATGGATaGTGCTCACCCGCACCAGCAACCAGCAGTAGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: LVFLDESDILDG*CSPAPATSSSR Trigger: CCTGCTACTGCTGGTTGCTGGTGCGGGTGAGCAGCATCCATCCAGAATGTCGCTTTCATCTAGAAATACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
||
| CDS CCA 72 bp | CCCTGGAAGGAACCAACACATAACTCAAACAGGATCTaGTATGTGGATGAGATGCCAATAGGGAAGGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: PWKEPTHNSNRI*YVDEMPIGKAA Trigger: TGCTGCCTTCCCTATTGGCATCTCATCCACATACCAGATCCTGTTTGAGTTATGTGTTGGTTCCTTCCAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011315.10 ENSMUST00000176433.2 |
||
| CDS CAA 90 bp | AGGCTCTCTGATTCTCCGTTTGGCTGCTTAGCAGCTCTGCACATTTaGTCTCTTCTTCTTGTATTTCTAGATGAAAGCGACATTCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: RLSDSPFGCLAALHI*SLLLVFLDESDILD Trigger: ATCCAGAATGTCGCTTTCATCTAGAAATACAAGAAGAAGAGACAAAATGTGCAGAGCTGCTAAGCAGCCAAACGGAGAATCAGAGAGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS TCA 72 bp | GTAGCCACACGCATCTATGAAATCTGGAAATGTCTCTaGCCATCCATCGCTAGTGCAGTTTTTGCTTATGTT | + |
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Preference number: 6 (lower is better) Translates to: VATRIYEIWKCL*PSIASAVFAYV Trigger: AACATAAGCAAAAACTGCACTAGCGATGGATGGTCAGAGACATTTCCAGATTTCATAGATGCGTGTGGCTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000011315.10 |
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| CDS TCA 72 bp | TGGTCATTGCCACCAACATCTGGAGAAGTTAGTTTCTaGAGTAAGATCCTTACAATGCTGATGAAGAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: WSLPPTSGEVSF*SKILTMLMKRA Trigger: TGCCCTCTTCATCAGCATTGTAAGGATCTTACTTCAGAAACTAACTTCTCCAGATGTTGGTGGCAATGACCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000011315.10 ENSMUST00000176433.2 |
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