Pregenerated sensors for VIP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019772

Ensembl transcript IDs: ENSMUST00000019906.6

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	AGTAGCCTTTGGGGATTGCAAAGCCTAATGGGAGAGATGAATCCGTaGGAGATGGAGTACCTATCACTGGAGAAATACAATTCTGAAAAT	+
Preference number: 1 (lower is better) Translates to: SSLWGLQSLMGEMNP*EMEYLSLEKYNSEN Trigger: ATTTTCAGAATTGTATTTCTCCAGTGATAGGTACTCCATCTCTCACGGATTCATCTCTCCCATTAGGCTTTGCAATCCCCAAAGGCTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
3UTR GCA 90 bp	TTATTCCCCTTAGATATTTTGCCTTATGTAACACAGCAGCCTATCTaGTTAGCATTTAGACTTGTTCACACTGATTATCTGTTCTGCTCT	+
Preference number: 1 (lower is better) Translates to: LFPLDILPYVTQQPI*LAFRLVHTDYLFCS Trigger: AGAGCAGAACAGATAATCAGTGTGAACAAGTCTAAATGCTAAGCAGATAGGCTGCTGTGTTACATAAGGCAAAATATCTAAGGGGAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
3UTR TCA 90 bp	GTACTTTCAGCAAAGGAAGCCAATAAGACAAAATATCATTGTGAGTaGCTATGGGAGAAGTATTTACTACTGGAAATCAAGCACTCCATT	+
Preference number: 1 (lower is better) Translates to: VLSAKEANKTKYHCE*LWEKYLLLEIKHSI Trigger: AATGGAGTGCTTGATTTCCAGTAGTAAATACTTCTCCCATAGTCACTCACAATGATATTTTGTCTTATTGGCTTCCTTTGCTGAAAGTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
3UTR TCA 72 bp	TGGGGATTGCAAAGCCTAATGGGAGAGATGAATCCGTaGGAGATGGAGTACCTATCACTGGAGAAATACAAT	+
Preference number: 3 (lower is better) Translates to: WGLQSLMGEMNP*EMEYLSLEKYN Trigger: ATTGTATTTCTCCAGTGATAGGTACTCCATCTCTCACGGATTCATCTCTCCCATTAGGCTTTGCAATCCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR GCA 90 bp	TGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCTGCCCAGTTGGTCAGGGTCACCTaGTCCTTCAAACGGCATCCT	+
Preference number: 4 (lower is better) Translates to: CNHVVVFLREFSDFSSAQLVRVT*SFKRHP Trigger: AGGATGCCGTTTGAAGGAGCAGGTGACCCTGACCAA...CTGGGCAGAGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR TCA 90 bp	TGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCTGCCCAGTGCTGTAATCGCTGGTaGAAACTCCATCAGCATGCC	+
Preference number: 4 (lower is better) Translates to: CNHVVVFLREFSDFSSAQCCNRW*KLHQHA Trigger: GGCATGCTGATGGAGTTTTCACCAGCGATTACAGCA...CTGGGCAGAGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR GCA 90 bp	TGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCTGCCCAGGAAGAGTATCAGGAATaGCAGGAACTGAGGCTTGCT	+
Preference number: 4 (lower is better) Translates to: CNHVVVFLREFSDFSSAQEEYQE*QELRLA Trigger: AGCAAGCCTCAGTTCCTGGCATTCCTGATACTCTTC...CTGGGCAGAGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR TCA 90 bp	ACTCATAATGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTAGGAATGCCAGGAACTaGGGCTTGCTTCTGGCTTCC	+
Preference number: 4 (lower is better) Translates to: THNVITWLFSFENSLISARNARN*GLLLAS Trigger: GGAAGCCAGAAGCAAGCCTCAGTTCCTGGCATTCCT...AGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACATTATGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR GCA 90 bp	TGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCTGCCCAGTCTGCTAAGGGATTCTaGAAGATGTCAGAGTCTGCT	+
Preference number: 4 (lower is better) Translates to: CNHVVVFLREFSDFSSAQSAKGF*KMSESA Trigger: AGCAGACTCTGACATCTTGCAGAATCCCTTAGCAGA...CTGGGCAGAGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR GCA 90 bp	TGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCTGCCCAGCTCTTCAAGAAAGTCTaGAGAATCTCCCTCACTGCT	+
Preference number: 4 (lower is better) Translates to: CNHVVVFLREFSDFSSAQLFKKV*RISLTA Trigger: AGCAGTGAGGGAGATTCTGCAGACTTTCTTGAAGAG...CTGGGCAGAGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR CCA 90 bp	TGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCTGCCCAGCTCCATCAGCATGCCTaGCATTTCTTGACACATCAT	+
Preference number: 4 (lower is better) Translates to: CNHVVVFLREFSDFSSAQLHQHA*HFLTHH Trigger: ATGATGTGTCAAGAAATGCCAGGCATGCTGATGGAG...CTGGGCAGAGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR TCA 90 bp	TGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCTGCCCAGATGCCTGGCATTTCTTaGCACATCATAATAGGGTGT	+
Preference number: 4 (lower is better) Translates to: CNHVVVFLREFSDFSSAQMPGIS*HIIIGC Trigger: ACACCCTATTATGATGTGTCAAGAAATGCCAGGCAT...CTGGGCAGAGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR GCA 90 bp	ACTCATAATGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTCAGAATCTCCCTCACTaGTCCTCTTTCCATTCAGGA	+
Preference number: 4 (lower is better) Translates to: THNVITWLFSFENSLISAQNLPH*SSFHSG Trigger: TCCTGAATGGAAAGAGGAGCAGTGAGGGAGATTCTG...AGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACATTATGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR GCA 90 bp	ACTCATAATGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTAAAACTCCATCAGCATaGCTGGCATTTCTTGACACA	+
Preference number: 4 (lower is better) Translates to: THNVITWLFSFENSLISAKTPSA*LAFLDT Trigger: TGTGTCAAGAAATGCCAGGCATGCTGATGGAGTTTT...AGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACATTATGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS-3UTR CCA 90 bp	ACTCATAATGTAATCACGTGGTTGTTTTCCTTCGAGAATTCTCTGATTTCAGCTTCTTTCCATTCAGGATaGAGTTCAGGTATTTCTTCA	+
Preference number: 4 (lower is better) Translates to: THNVITWLFSFENSLISASFHSG*SSGISS Trigger: TGAAGAAATACCTGAACTCCATCCTGAATGGAAAGA...AGCTGAAATCAGAGAATTCTCGAAGGAAAACAACCACGTGATTACATTATGAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS CCA 72 bp	TTCTGCAAGATGTCAGAGTCTGCTTTTAAAGAGACTTaGTCAGGGTCACCTGCTCCTTCAAACGGCATCCTG	+
Preference number: 6 (lower is better) Translates to: FCKMSESAFKET*SGSPAPSNGIL Trigger: CAGGATGCCGTTTGAAGGAGCAGGTGACCCTGACCAAGTCTCTTTAAAAGCAGACTCTGACATCTTGCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS CAA 90 bp	CCTCTTTCCATTCAGGATGGAGTTCAGGTATTTCTTCACAGCCATTaGCTTTCTGAGGCGGGTGTAGTTATCTGTGAAGACGGCATCAGA	+
Preference number: 6 (lower is better) Translates to: PLSIQDGVQVFLHSH*LSEAGVVICEDGIR Trigger: TCTGATGCCGTCTTCACAGATAACTACACCCGCCTCAGAAAGCAAATGGCTGTGAAGAAATACCTGAACTCCATCCTGAATGGAAAGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS TCA 72 bp	CAGAAATCTGACCCAGAAGTCTGCTGTAATCGCTGGTaGAAACTCCATCAGCATGCCTGGCATTTCTTGACA	+
Preference number: 6 (lower is better) Translates to: QKSDPEVCCNRW*KLHQHAWHFLT Trigger: TGTCAAGAAATGCCAGGCATGCTGATGGAGTTTTCACCAGCGATTACAGCAGACTTCTGGGTCAGATTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019906.6
CDS CAA 72 bp	ATTCAGGATGGAGTTCAGGTATTTCTTCACAGCCATTaGCTTTCTGAGGCGGGTGTAGTTATCTGTGAAGAC	+
Preference number: 6 (lower is better) Translates to: IQDGVQVFLHSH*LSEAGVVICED Trigger: GTCTTCACAGATAACTACACCCGCCTCAGAAAGCAAATGGCTGTGAAGAAATACCTGAACTCCATCCTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019906.6